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322 commits

Author SHA1 Message Date
Vasilije
dabd0912f8
feat: Cog 2082 add BAML to cognee (#1054)
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Co-authored-by: Hande <159312713+hande-k@users.noreply.github.com>
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2025-08-06 10:41:47 +02:00
Vasilije
daa4e9acc4
fix: Remove weaviate (#1139)
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2025-07-23 19:34:35 +02:00
hajdul88
dad7da2e7b
fix:Fixes missing entity to entity edges (#1118)
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Fixes missing entity to entity edges

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2025-07-22 11:48:56 +02:00
Vasilije
7af7e3834f
feat: Cog 2340 remove graphistry (#1080)
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2025-07-21 15:06:23 -04:00
Boris
468186789c
fix: s3 file system env vars (#1112)
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2025-07-19 15:56:15 +02:00
Boris
c5bd6bed40
fix: s3 file storage (#1095)
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2025-07-16 20:36:18 +02:00
Vasilije
67c006bd2f
fix: Remove milvus from core (#1096)
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2025-07-16 15:56:34 +02:00
Boris
46c4463cb2
feat: s3 storage (#988)
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Co-authored-by: vasilije <vas.markovic@gmail.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
2025-07-14 21:47:08 +02:00
Vasilije
4bcb893a54
feat: Weighted edges (#1068)
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2025-07-14 21:26:25 +02:00
vasilije
9fd300112d removed memgraph 2025-07-13 20:43:39 +02:00
Vasilije
8198118baa
fix: added poetry lock rebuild (#1070)
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2025-07-11 15:46:10 +02:00
Boris Arzentar
340a61b20a
Merge remote-tracking branch 'origin/dev' into feat/modal-parallelization 2025-07-08 22:13:22 +02:00
Igor Ilic
e51de46163
feat: Add test for permissions, change Cognee search return value (#1058)
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## Description
Add tests for permissions for Cognee

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2025-07-08 13:33:03 +02:00
Boris Arzentar
611df1e9b9
fix: unit tests and ruff lint errors 2025-07-02 11:39:10 +02:00
Igor Ilic
0d75b6dc76 Merge branch 'main' into main-merge 2025-06-30 12:24:24 +02:00
hajdul88
d1a9cab17d
Feature: Set default database to Kuzu (#1022)
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## Description
Set default db to kuzu and remove networkx adapter due to community repo
adapter

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2025-06-27 08:50:58 +02:00
hajdul88
97d05f105e
feat: Adds core db tests for main search (#1006)
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## Description
 Adds core db tests for main search

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2025-06-24 10:51:34 +02:00
Igor Ilic
31809d98df
feat: Fix python312 issue on main (#1011)
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2025-06-21 09:49:03 +02:00
hajdul88
acdcb0e8d9
feat: replace Owlready2 with RDFLib (#981)
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## Description
Replaces Owlready2 with RDFLib

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2025-06-17 14:49:53 +02:00
Igor Ilic
456f3b58c0
Mcp test (#980)
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Add test of MCP functionality and starting of MCP server, fix some MCP and LanceDB
issues

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2025-06-13 07:52:48 -04:00
hajdul88
21a4217301
Feature: Makes s3 pathway imports optional so cognee can run without s3fs (#978)
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## Description
Makes s3 pathway imports optional so cognee can run without s3fs

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2025-06-13 08:53:30 +02:00
Igor Ilic
842fb8112f
fix: Resolve gemini ollama cicd issue (#979)
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## Description
Resolve issue with ollama and gemini ci cd

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2025-06-12 08:11:10 -04:00
Igor Ilic
23c9a77ea0
feat: Return CI test for docker build (#977)
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2025-06-12 06:10:21 -04:00
Boris
645e939b72
chore: remove aws deployment (#975)
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2025-06-12 11:47:12 +02:00
Igor Ilic
84c7aeb1a5
Merge dev with main (#921)
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Merge changes on main to dev

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2025-06-07 07:48:47 -07:00
Igor Ilic
1ed6cfd918
feat: new Dataset permissions (#869)
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Co-authored-by: Boris <boris@topoteretes.com>
2025-06-06 14:20:57 +02:00
Igor Ilic
aa3163561d
refactor: remove notebooks (#905)
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2025-06-04 11:06:36 -07:00
Hande
e0aa7c9a61
fix: memgraph adapter (#899)
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2025-06-02 22:38:23 +02:00
Vasilije
b58d7d44f3
fix: 0.1.41 Release (#894)
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2025-05-31 02:19:29 +02:00
Hande
3b07f3c08d
feat: Test db examples (#817)
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2025-05-16 09:30:47 +02:00
Boris
0aac93e9c4
Merge dev to main (#827)
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2025-05-15 13:15:49 +02:00
hajdul88
a78fec3a91
fix: Fixes collection search limit in brute force triplet search (#814)
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2025-05-12 13:06:57 +02:00
Matea Pesic
5d415dc1a0
feat: Add Memgraph integration (#751)
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## Description
This PR adds support for the Memgraph graph database following the
[graph database integration
guide](https://docs.cognee.ai/contributing/adding-providers/graph-db/graph-database-integration):
- Implemented `MemgraphAdapter` for interfacing with Memgraph.
- Updated `get_graph_engine.py` to return MemgraphAdapter when
appropriate.
- Added a test script:` test_memgraph.py.`
- Created a dedicated test workflow:
`.github/workflows/test_memgraph.yml.`

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Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Boris <boris@topoteretes.com>
2025-05-10 13:55:37 +02:00
Igor Ilic
6109bf5ea5
feat: Add uv and poetry support to Cognee [COG-1572] (#780)
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## Description
Add support for UV and for Poetry package management

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2025-04-28 12:27:43 +02:00
Boris
b9a7c533c8
fix: run cognee in Docker [COG-1961] (#775) (#779)
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## Description
Resolve issue with .venv being broken when using docker compose with
Cognee

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Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
2025-04-23 21:35:48 +02:00
Igor Ilic
98a1b79293
fix: run cognee in Docker [COG-1961] (#775)
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## Description
Resolve issue with .venv being broken when using docker compose with
Cognee

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Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
2025-04-23 21:11:16 +02:00
Boris Arzentar
9bceb98e5d fix: remove chromadb test from github workflow 2025-04-23 09:29:54 +02:00
Boris
675b66175f
test: make search unit tests deterministic (#726)
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2025-04-18 21:55:24 +02:00
Daniel Molnar
9ba12b25ef
feat: add delete by document (#668)
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## Description
Delete by document.

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2025-04-17 15:42:10 +02:00
hajdul88
0121a2b5fc
feature: Adds S3 functionality (#731)
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## Description
Adds S3 support


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2025-04-17 08:56:40 +02:00
Igor Ilic
acd7abbd29
Fix gemini gh action (#748)
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Fix Gemini github action

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2025-04-16 15:22:16 +02:00
Vasilije
4e9ca94e78
feat: Adding rate limiting (#709)
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2025-04-16 12:03:46 +02:00
Igor Ilic
22b363b297
tests: Add gh action to test relational db migration [COG-1591] (#718)
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## Description
Add relational db migration action 

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2025-04-11 14:02:44 +02:00
Vasilije
c3d33e728e
feat: New tests (#678)
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Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
2025-04-10 10:52:48 +02:00
Boris
534e7fb22c
fix: ollama test embedding endpoint (#708)
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2025-04-07 18:13:39 +02:00
Igor Ilic
6898e8f766
Fix codify mcp (#696)
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## Description
- Redirect all Cognee output to stderr for MCP ( as stdout is used to
communicate between MCP Client and server )
- Add test for CODE search type
- Resolve missing optional GUI dependency

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2025-04-02 06:38:17 +02:00
Boris
daed8d51f5
fix: add pipeline_name to PipelineRun and change logging default to ERROR (#675)
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2025-03-29 14:55:34 +01:00
Boris
d192d1fe20
chore: remove unused dependencies and make some optional (#661)
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2025-03-25 10:19:52 +01:00
Igor Ilic
9b9fe48843
chore: Temporarily remove embedding env vars for code graph action (#647)
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## Description
Temporarily remove embedding env variables for code graph action so the
action can run

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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit

- **Chores**
- Removed legacy secret configuration from the testing workflow to
streamline the CI process and enhance maintainability.
- **Improvements**
  - Updated the argument name in the code graph pipeline for clarity.
- Enhanced the handling of results in the example script to support
asynchronous processing.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
2025-03-17 14:58:03 +01:00
Daniel Molnar
69950a04dd
feat: Kuzu integration (#628)
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## Description
Let's scope it out.

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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit

- **New Features**
- Introduced support for the Kuzu graph database provider, enhancing
graph operations and data management capabilities.
- Added a comprehensive adapter for Kuzu, facilitating various graph
database operations.
  - Expanded the enumeration of graph database types to include Kuzu.

- **Tests**
- Launched comprehensive asynchronous tests to validate the new Kuzu
graph integration’s performance and reliability.

- **Chores**
- Updated dependency settings and continuous integration workflows to
include the Kuzu provider, ensuring smoother deployments and improved
system quality.
- Enhanced configuration documentation to clarify Kuzu database
requirements.
  - Modified Dockerfile to include Kuzu in the installation extras.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->

---------

Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
2025-03-13 17:47:09 +01:00