feat: Add uv and poetry support to Cognee [COG-1572] (#780)
<!-- .github/pull_request_template.md --> ## Description Add support for UV and for Poetry package management ## DCO Affirmation I affirm that all code in every commit of this pull request conforms to the terms of the Topoteretes Developer Certificate of Origin.
This commit is contained in:
Igor Ilic
GitHub
parent
5aca3f091e
commit
6109bf5ea5
7 changed files with 9408 additions and 668 deletions
2
.github/actions/cognee_setup/action.yml
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2
.github/actions/cognee_setup/action.yml
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@ -24,4 +24,4 @@ runs:
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- name: Install dependencies
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shell: bash
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run: poetry install --no-interaction -E api -E docs -E evals -E gemini -E codegraph -E ollama
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run: poetry install --no-interaction -E api -E docs -E evals -E gemini -E codegraph -E ollama -E dev
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19
.github/workflows/python_version_tests.yml
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19
.github/workflows/python_version_tests.yml
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@ -58,8 +58,10 @@ jobs:
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python-version: ${{ inputs.python-version }}
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- name: Run unit tests
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shell: bash
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run: poetry run pytest cognee/tests/unit/
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env:
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PYTHONUTF8: 1
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LLM_PROVIDER: openai
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LLM_MODEL: ${{ secrets.LLM_MODEL }}
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LLM_ENDPOINT: ${{ secrets.LLM_ENDPOINT }}
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@ -74,10 +76,26 @@ jobs:
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- name: Run integration tests
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if: ${{ !contains(matrix.os, 'windows') }}
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shell: bash
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run: poetry run pytest cognee/tests/integration/
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env:
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PYTHONUTF8: 1
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LLM_PROVIDER: openai
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LLM_MODEL: ${{ secrets.LLM_MODEL }}
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LLM_ENDPOINT: ${{ secrets.LLM_ENDPOINT }}
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LLM_API_KEY: ${{ secrets.LLM_API_KEY }}
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LLM_API_VERSION: ${{ secrets.LLM_API_VERSION }}
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EMBEDDING_PROVIDER: openai
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EMBEDDING_MODEL: ${{ secrets.EMBEDDING_MODEL }}
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EMBEDDING_ENDPOINT: ${{ secrets.EMBEDDING_ENDPOINT }}
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EMBEDDING_API_KEY: ${{ secrets.EMBEDDING_API_KEY }}
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EMBEDDING_API_VERSION: ${{ secrets.EMBEDDING_API_VERSION }}
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- name: Run default basic pipeline
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shell: bash
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env:
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PYTHONUTF8: 1
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GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }}
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GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }}
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@ -95,6 +113,7 @@ jobs:
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run: poetry run python ./cognee/tests/test_library.py
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- name: Build with Poetry
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shell: bash
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run: poetry build
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- name: Install Package
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@ -29,6 +29,7 @@ RUN apt-get update
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RUN apt-get install -y \
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gcc \
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build-essential \
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libpq-dev
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WORKDIR /app
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@ -40,7 +41,7 @@ RUN pip install poetry
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RUN poetry config virtualenvs.create false
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# Install the dependencies using the defined extras
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RUN poetry install --extras "${POETRY_EXTRAS}" --no-root --without dev
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RUN poetry install --extras "${POETRY_EXTRAS}" --no-root
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# Set the PYTHONPATH environment variable to include the /app directory
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ENV PYTHONPATH=/app
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@ -74,19 +74,20 @@ async def main():
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for result in search_results:
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print(f"{result}\n")
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search_results = await cognee.search(
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query_type=SearchType.NATURAL_LANGUAGE,
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query_text=f"Find nodes connected to node with name {random_node_name}",
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)
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assert len(search_results) != 0, "Query related natural language don't exist."
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print("\nExtracted results are:\n")
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for result in search_results:
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print(f"{result}\n")
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# NOTE: Due to the test failing often on weak LLM models we've removed this test for now
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# search_results = await cognee.search(
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# query_type=SearchType.NATURAL_LANGUAGE,
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# query_text=f"Find nodes connected to node with name {random_node_name}",
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# )
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# assert len(search_results) != 0, "Query related natural language don't exist."
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# print("\nExtracted results are:\n")
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# for result in search_results:
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# print(f"{result}\n")
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user = await get_default_user()
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history = await get_history(user.id)
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assert len(history) == 8, "Search history is not correct."
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assert len(history) == 6, "Search history is not correct."
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await cognee.prune.prune_data()
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assert not os.path.isdir(data_directory_path), "Local data files are not deleted"
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1291
poetry.lock
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1291
poetry.lock
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Load diff
246
pyproject.toml
246
pyproject.toml
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@ -1,12 +1,14 @@
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[tool.poetry]
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[project]
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name = "cognee"
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version = "0.1.39"
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description = "Cognee - is a library for enriching LLM context with a semantic layer for better understanding and reasoning."
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authors = ["Vasilije Markovic", "Boris Arzentar"]
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authors = [
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{ name = "Vasilije Markovic" },
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{ name = "Boris Arzentar" },
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]
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requires-python = ">=3.10,<=3.13"
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readme = "README.md"
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license = "Apache-2.0"
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homepage = "https://www.cognee.ai"
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repository = "https://github.com/topoteretes/cognee"
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classifiers = [
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"Development Status :: 4 - Beta",
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"Intended Audience :: Developers",
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@ -14,129 +16,125 @@ classifiers = [
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"Topic :: Software Development :: Libraries",
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"Operating System :: MacOS :: MacOS X",
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"Operating System :: POSIX :: Linux",
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"Operating System :: Microsoft :: Windows"
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"Operating System :: Microsoft :: Windows",
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]
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dependencies = [
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"openai>=1.59.4,<2",
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"python-dotenv==1.0.1",
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"pydantic==2.10.5",
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"pydantic-settings>=2.2.1,<3",
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"typing_extensions==4.12.2",
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"nltk==3.9.1",
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"numpy>=1.26.4, <=2.1",
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"pandas==2.2.3",
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"boto3>=1.26.125,<2",
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"botocore>=1.35.54,<2",
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"sqlalchemy==2.0.39",
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"aiosqlite>=0.20.0,<0.21",
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"tiktoken<=0.9.0",
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"litellm>=1.57.4",
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"instructor==1.7.2",
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"langfuse>=2.32.0,<3",
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"filetype>=1.2.0,<2",
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"aiohttp>=3.11.14,<4",
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"aiofiles>=23.2.1,<24",
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"owlready2>=0.47,<0.48",
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"graphistry>=0.33.5,<0.34",
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"pypdf>=4.1.0,<6.0.0",
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"jinja2>=3.1.3,<4",
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"matplotlib>=3.8.3,<4",
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"networkx>=3.2.1,<4",
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"lancedb==0.16.0",
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"alembic>=1.13.3,<2",
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"pre-commit>=4.0.1,<5",
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"scikit-learn>=1.6.1,<2",
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"limits>=4.4.1,<5",
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"fastapi==0.115.7",
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"python-multipart==0.0.20",
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"fastapi-users[sqlalchemy]==14.0.1",
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"dlt[sqlalchemy]>=1.9.0,<2",
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"sentry-sdk[fastapi]>=2.9.0,<3",
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"structlog>=25.2.0,<26",
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"s3fs>=2025.3.2,<2026",
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]
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[tool.poetry.dependencies]
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python = ">=3.10,<=3.13"
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openai = "^1.59.4"
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python-dotenv = "1.0.1"
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pydantic = "2.10.5"
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pydantic-settings = "^2.2.1"
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typing_extensions = "4.12.2"
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nltk = "3.9.1"
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numpy = ">=1.26.4, <=2.1"
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pandas = "2.2.3"
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boto3 = "^1.26.125"
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botocore="^1.35.54"
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sqlalchemy = "2.0.39"
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aiosqlite = "^0.20.0"
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tiktoken = "<=0.9.0"
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litellm = ">=1.57.4"
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instructor = "1.7.2"
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langfuse = "^2.32.0"
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filetype = "^1.2.0"
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aiohttp = "^3.11.14"
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aiofiles = "^23.2.1"
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owlready2 = "^0.47"
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graphistry = "^0.33.5"
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pypdf = ">=4.1.0,<6.0.0"
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jinja2 = "^3.1.3"
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matplotlib = "^3.8.3"
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networkx = "^3.2.1"
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lancedb = "0.16.0"
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alembic = "^1.13.3"
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pre-commit = "^4.0.1"
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scikit-learn = "^1.6.1"
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limits = "^4.4.1"
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fastapi = {version = "0.115.7"}
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python-multipart = "0.0.20"
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fastapi-users = {version = "14.0.1", extras = ["sqlalchemy"]}
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uvicorn = {version = "0.34.0", optional = true}
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gunicorn = {version = "^20.1.0", optional = true}
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dlt = {extras = ["sqlalchemy"], version = "^1.9.0"}
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qdrant-client = {version = "^1.9.0", optional = true}
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weaviate-client = {version = "4.9.6", optional = true}
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neo4j = {version = "^5.20.0", optional = true}
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falkordb = {version = "1.0.9", optional = true}
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kuzu = {version = "0.8.2", optional = true}
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chromadb = {version = "^0.6.0", optional = true}
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langchain_text_splitters = {version = "0.3.2", optional = true}
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langsmith = {version = "0.2.3", optional = true}
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posthog = {version = "^3.5.0", optional = true}
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groq = {version = "0.8.0", optional = true}
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anthropic = {version = "^0.26.1", optional = true}
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sentry-sdk = {extras = ["fastapi"], version = "^2.9.0"}
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asyncpg = {version = "0.30.0", optional = true}
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pgvector = {version = "^0.3.5", optional = true}
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psycopg2 = {version = "^2.9.10", optional = true}
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llama-index-core = {version = "^0.12.11", optional = true}
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deepeval = {version = "^2.0.1", optional = true}
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transformers = {version = "^4.46.3", optional = true}
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pymilvus = {version = "^2.5.0", optional = true}
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unstructured = { extras = ["csv", "doc", "docx", "epub", "md", "odt", "org", "ppt", "pptx", "rst", "rtf", "tsv", "xlsx"], version = "^0.16.13", optional = true }
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mistral-common = {version = "^1.5.2", optional = true}
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fastembed = {version = "<=0.6.0", optional = true, markers = "python_version < '3.13'"}
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tree-sitter = {version = "^0.24.0", optional = true}
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tree-sitter-python = {version = "^0.23.6", optional = true}
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plotly = {version = "^6.0.0", optional = true}
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gdown = {version = "^5.2.0", optional = true}
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qasync = {version = "^0.27.1", optional = true}
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graphiti-core = {version = "^0.7.0", optional = true}
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structlog = "^25.2.0"
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pyside6 = {version = "^6.8.3", optional = true}
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google-generativeai = {version = "^0.8.4", optional = true}
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notebook = {version = "^7.1.0", optional = true}
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s3fs = "^2025.3.2"
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[project.optional-dependencies]
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api = [
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"uvicorn==0.34.0",
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"gunicorn>=20.1.0,<21",
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]
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weaviate = ["weaviate-client==4.9.6"]
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qdrant = ["qdrant-client>=1.9.0,<2"]
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neo4j = ["neo4j>=5.20.0,<6"]
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postgres = [
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"psycopg2>=2.9.10,<3",
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"pgvector>=0.3.5,<0.4",
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"asyncpg==0.30.0",
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]
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notebook = ["notebook>=7.1.0,<8"]
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langchain = [
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"langsmith==0.2.3",
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"langchain_text_splitters==0.3.2",
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]
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llama-index = ["llama-index-core>=0.12.11,<0.13"]
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gemini = ["google-generativeai>=0.8.4,<0.9"]
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huggingface = ["transformers>=4.46.3,<5"]
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ollama = ["transformers>=4.46.3,<5"]
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mistral = ["mistral-common>=1.5.2,<2"]
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anthropic = ["anthropic>=0.26.1,<0.27"]
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deepeval = ["deepeval>=2.0.1,<3"]
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posthog = ["posthog>=3.5.0,<4"]
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falkordb = ["falkordb==1.0.9"]
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kuzu = ["kuzu==0.8.2"]
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groq = ["groq==0.8.0"]
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milvus = ["pymilvus>=2.5.0,<3"]
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chromadb = [
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"chromadb>=0.3.0,<0.7",
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"pypika==0.48.8",
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]
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docs = ["unstructured[csv, doc, docx, epub, md, odt, org, ppt, pptx, rst, rtf, tsv, xlsx]>=0.16.13,<0.17"]
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codegraph = [
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"fastembed<=0.6.0 ; python_version < '3.13'",
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"transformers>=4.46.3,<5",
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"tree-sitter>=0.24.0,<0.25",
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"tree-sitter-python>=0.23.6,<0.24",
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]
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evals = [
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"plotly>=6.0.0,<7",
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"gdown>=5.2.0,<6",
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]
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gui = [
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"pyside6>=6.8.3,<7",
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"qasync>=0.27.1,<0.28",
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]
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graphiti = ["graphiti-core>=0.7.0,<0.8"]
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dev = [
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"pytest>=7.4.0,<8",
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"pytest-asyncio>=0.21.1,<0.22",
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"coverage>=7.3.2,<8",
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"mypy>=1.7.1,<2",
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"notebook>=7.1.0,<8",
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"deptry>=0.20.0,<0.21",
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"debugpy==1.8.9",
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"pylint>=3.0.3,<4",
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"ruff>=0.9.2,<1.0.0",
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"tweepy==4.14.0",
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"gitpython>=3.1.43,<4",
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"pylance==0.19.2",
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"mkdocs-material>=9.5.42,<10",
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"mkdocs-minify-plugin>=0.8.0,<0.9",
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"mkdocstrings[python]>=0.26.2,<0.27",
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]
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[project.urls]
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Homepage = "https://www.cognee.ai"
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Repository = "https://github.com/topoteretes/cognee"
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[tool.poetry.extras]
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api = ["uvicorn", "gunicorn"]
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weaviate = ["weaviate-client"]
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qdrant = ["qdrant-client"]
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neo4j = ["neo4j"]
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postgres = ["psycopg2", "pgvector", "asyncpg"]
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notebook = ["notebook", "ipykernel", "overrides", "ipywidgets", "jupyterlab", "jupyterlab_widgets", "jupyterlab-server", "jupyterlab-git"]
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langchain = ["langsmith", "langchain_text_splitters"]
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llama-index = ["llama-index-core"]
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gemini = ["google-generativeai"]
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huggingface = ["transformers"]
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ollama = ["transformers"]
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mistral = ["mistral-common"]
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anthropic = ["anthropic"]
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deepeval = ["deepeval"]
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posthog = ["posthog"]
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falkordb = ["falkordb"]
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kuzu = ["kuzu"]
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groq = ["groq"]
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milvus = ["pymilvus"]
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chromadb = ["chromadb"]
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docs = ["unstructured"]
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codegraph = ["fastembed", "transformers", "tree-sitter", "tree-sitter-python"]
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evals = ["plotly", "gdown"]
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gui = ["pyside6", "qasync"]
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graphiti = ["graphiti-core"]
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[build-system]
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requires = ["hatchling"]
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build-backend = "hatchling.build"
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[tool.poetry.group.dev.dependencies]
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pytest = "^7.4.0"
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pytest-asyncio = "^0.21.1"
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coverage = "^7.3.2"
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mypy = "^1.7.1"
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notebook = {version = "^7.1.0", optional = true}
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deptry = "^0.20.0"
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debugpy = "1.8.9"
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pylint = "^3.0.3"
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ruff = ">=0.9.2,<1.0.0"
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tweepy = "4.14.0"
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gitpython = "^3.1.43"
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pylance = "0.19.2"
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[tool.poetry.group.docs.dependencies]
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mkdocs-material = "^9.5.42"
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mkdocs-minify-plugin = "^0.8.0"
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mkdocstrings = {extras = ["python"], version = "^0.26.2"}
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[tool.ruff] # https://beta.ruff.rs/docs/
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[tool.ruff]
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line-length = 100
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exclude = [
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"migrations/", # Ignore migrations directory
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@ -151,7 +149,3 @@ exclude = [
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[tool.ruff.lint]
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ignore = ["F401"]
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[build-system]
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requires = ["poetry-core"]
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build-backend = "poetry.core.masonry.api"
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