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## Description
Fixes missing entity to entity edges
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Co-authored-by: Igor Ilic <igorilic03@gmail.com>
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Co-authored-by: vasilije <vas.markovic@gmail.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
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Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
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## Description
Add tests for permissions for Cognee
## DCO Affirmation
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the terms of the Topoteretes Developer Certificate of Origin.
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## Description
Set default db to kuzu and remove networkx adapter due to community repo
adapter
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the terms of the Topoteretes Developer Certificate of Origin.
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## Description
Adds core db tests for main search
## DCO Affirmation
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the terms of the Topoteretes Developer Certificate of Origin.
---------
Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
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## Description
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## Description
Replaces Owlready2 with RDFLib
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Co-authored-by: Igor Ilic <igorilic03@gmail.com>
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## Description
Add test of MCP functionality and starting of MCP server, fix some MCP and LanceDB
issues
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the terms of the Topoteretes Developer Certificate of Origin.
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## Description
Makes s3 pathway imports optional so cognee can run without s3fs
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## Description
Resolve issue with ollama and gemini ci cd
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## Description
Merge changes on main to dev
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## DCO Affirmation
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---------
Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
Co-authored-by: Boris <boris@topoteretes.com>
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## Description
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Signed-off-by: Diego B Theuerkauf <diego.theuerkauf@tuebingen.mpg.de>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
Co-authored-by: Boris <boris@topoteretes.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Hande <159312713+hande-k@users.noreply.github.com>
Co-authored-by: Matea Pesic <80577904+matea16@users.noreply.github.com>
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Daniel Molnar <soobrosa@gmail.com>
Co-authored-by: Diego Baptista Theuerkauf <34717973+diegoabt@users.noreply.github.com>
Co-authored-by: Dmitrii Galkin <36552323+dm1tryG@users.noreply.github.com>
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
Co-authored-by: lxobr <122801072+lxobr@users.noreply.github.com>
Co-authored-by: github-actions[bot] <github-actions@users.noreply.github.com>
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## DCO Affirmation
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---------
Co-authored-by: Boris <boris@topoteretes.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
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## Description
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## DCO Affirmation
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---------
Co-authored-by: vasilije <vas.markovic@gmail.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Hande <159312713+hande-k@users.noreply.github.com>
Co-authored-by: Matea Pesic <80577904+matea16@users.noreply.github.com>
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Daniel Molnar <soobrosa@gmail.com>
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## Description
This PR adds support for the Memgraph graph database following the
[graph database integration
guide](https://docs.cognee.ai/contributing/adding-providers/graph-db/graph-database-integration):
- Implemented `MemgraphAdapter` for interfacing with Memgraph.
- Updated `get_graph_engine.py` to return MemgraphAdapter when
appropriate.
- Added a test script:` test_memgraph.py.`
- Created a dedicated test workflow:
`.github/workflows/test_memgraph.yml.`
## DCO Affirmation
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the terms of the Topoteretes Developer Certificate of Origin.
---------
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Boris <boris@topoteretes.com>
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## Description
Add support for UV and for Poetry package management
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## Description
Resolve issue with .venv being broken when using docker compose with
Cognee
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<!-- .github/pull_request_template.md -->
## Description
Resolve issue with .venv being broken when using docker compose with
Cognee
## DCO Affirmation
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Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
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Co-authored-by: Daniel Molnar <soobrosa@gmail.com>
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## Description
Delete by document.
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## Description
Adds S3 support
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## Description
Fix Gemini github action
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Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
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## Description
Add relational db migration action
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Co-authored-by: Daniel Molnar <soobrosa@gmail.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
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## Description
- Redirect all Cognee output to stderr for MCP ( as stdout is used to
communicate between MCP Client and server )
- Add test for CODE search type
- Resolve missing optional GUI dependency
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## Description
Temporarily remove embedding env variables for code graph action so the
action can run
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **Chores**
- Removed legacy secret configuration from the testing workflow to
streamline the CI process and enhance maintainability.
- **Improvements**
- Updated the argument name in the code graph pipeline for clarity.
- Enhanced the handling of results in the example script to support
asynchronous processing.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
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## Description
Let's scope it out.
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Introduced support for the Kuzu graph database provider, enhancing
graph operations and data management capabilities.
- Added a comprehensive adapter for Kuzu, facilitating various graph
database operations.
- Expanded the enumeration of graph database types to include Kuzu.
- **Tests**
- Launched comprehensive asynchronous tests to validate the new Kuzu
graph integration’s performance and reliability.
- **Chores**
- Updated dependency settings and continuous integration workflows to
include the Kuzu provider, ensuring smoother deployments and improved
system quality.
- Enhanced configuration documentation to clarify Kuzu database
requirements.
- Modified Dockerfile to include Kuzu in the installation extras.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
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## Description
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# Add Support for ChromaDB
## Summary
This PR adds support for ChromaDB as a vector database option in the
Cognee application. ChromaDB is a modern, open-source embedding database
designed for AI applications.
## Changes
- Created a new ChromaDBAdapter implementation for vector database
operations
- Added comprehensive test suite for ChromaDB functionality
- Updated docker-compose.yml to include ChromaDB service
- Modified environment configuration to support ChromaDB settings
- Updated vector engine creation logic to support ChromaDB as an option
## Technical Details
- Implemented `ChromaDBAdapter.py` (347 lines) with full CRUD operations
for vector data
- Created test suite (`test_chromadb.py`) with 171 lines of test
coverage
- Updated vector engine creation process to dynamically select ChromaDB
when configured
- Modified settings router to accommodate new database option
- Updated environment template with ChromaDB configuration options
## Docker Changes
- Added ChromaDB service to docker-compose.yml with appropriate
configuration
This PR enhances Cognee's flexibility by providing an alternative vector
database option, allowing users to choose the most appropriate database
for their specific use case.
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
Tested with UI + tests.
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Expanded vector database integration by adding support for Chromadb,
enabling enhanced data management and search functionalities.
- **Tests**
- Added automated tests to validate the Chromadb integration and related
operations.
- **Chores**
- Updated configuration guidance and dependency management to include
Chromadb.
- Provided an optional container deployment template for Chromadb.
- Added a new entry to ignore the `.chromadb_data/` directory in version
control.
- Introduced a new GitHub Actions workflow for testing Chromadb
integration.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
