Commit graph

481 commits

Author SHA1 Message Date
Pavel Zorin
a6bc27afaa Cleanup 2025-12-12 17:31:54 +01:00
Pavel Zorin
14ff94f269 Initial release pipeline 2025-12-12 17:09:10 +01:00
hajdul88
001fbe699e
feat: Adds edge centered payload and embedding structure during ingestion (#1853)
<!-- .github/pull_request_template.md -->

## Description
This pull request introduces edge‑centered payloads to the ingestion
process. Payloads are stored in the Triplet_text collection which is
compatible with the triplet_embedding memify pipeline.

Changes in This PR:

- Refactored custom edge handling, from now on they can be passed to the
add_data_points method so the ingestion is centralized and is happening
in one place.
- Added private methods to handle edge centered payload creation inside
the add_data_points.py
- Added unit tests to cover the new functionality
- Added integration tests
- Added e2e tests

Acceptance Criteria and Testing
Scenario 1:
-Set TRIPLET_EMBEDDING env var to True
-Run prune, add, cognify
-Verify the vector DB contains a non empty Triplet_text collection and
the number of triplets are matching with the number of edges in the
graph database
-Use the new triplet_completion search type and confirm it works
correctly.

Scenario 2:
-Set TRIPLET_EMBEDDING env var to True
-Run prune, add, cognify
-Verify the vector DB does not have the Triplet_text collection 
-You should receive an error indicating that the Triplet_text is not
available


## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [x] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [x] **I have tested my changes thoroughly before submitting this PR**
- [x] **This PR contains minimal changes necessary to address the
issue/feature**
- [x] My code follows the project's coding standards and style
guidelines
- [x] I have added tests that prove my fix is effective or that my
feature works
- [x] I have added necessary documentation (if applicable)
- [x] All new and existing tests pass
- [x] I have searched existing PRs to ensure this change hasn't been
submitted already
- [x] I have linked any relevant issues in the description
- [x] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.


<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit

* **New Features**
* Triplet embeddings supported—embeddings created from graph edges plus
connected node text
  * Ability to supply custom edges when adding data points
  * New configuration toggle to enable/disable triplet embedding

* **Tests**
* Added comprehensive unit and end-to-end tests for edge-centered
payloads and triplet embedding
  * New CI job to run the edge-centered payload e2e test

* **Bug Fixes**
* Adjusted server start behavior to surface process output in parent
logs

<sub>✏️ Tip: You can customize this high-level summary in your review
settings.</sub>
<!-- end of auto-generated comment: release notes by coderabbit.ai -->

---------

Co-authored-by: Pavel Zorin <pazonec@yandex.ru>
2025-12-10 17:10:06 +01:00
Vasilije
9571641199
refactor: move codify pipeline out of main repo (#1738)
<!-- .github/pull_request_template.md -->

## Description
<!--
Please provide a clear, human-generated description of the changes in
this PR.
DO NOT use AI-generated descriptions. We want to understand your thought
process and reasoning.
-->
This PR removes codify, and the code graph pipeline, out of the
repository. It also introduces a Custom Pipeline interface, which can be
used in the future to define custom pipelines.

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [x] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
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issue/feature**
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guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
2025-12-04 23:10:39 -08:00
Igor Ilic
4afde917a9
Main merge vol4 (#1856)
<!-- .github/pull_request_template.md -->

## Description
Merge main changes into dev branch

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
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issue/feature**
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guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.


<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit

* **Documentation**
* Overhauled README: renamed tagline, clarified product positioning,
reorganized Get Started into Open Source and Cloud paths, streamlined
Quickstart, refreshed demos, navigation, and citation/contributing
sections.

* **New Features**
* Added MCP tools for developer rules management, interaction logging,
and enhanced search modes (SUMMARIES, CYPHER, FEELING_LUCKY).

* **Bug Fixes**
  * Improved embedding handling to support alternate response formats.

* **Chores**
  * Updated test/dev dependency versions.

<sub>✏️ Tip: You can customize this high-level summary in your review
settings.</sub>
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
2025-12-04 17:48:11 +01:00
Pavel Zorin
6d1f1d183a Removed python-version from pre-test 2025-12-04 11:51:32 +01:00
Pavel Zorin
ed0c0d1823 Potential fix for code scanning alert no. 407: Workflow does not contain permissions
Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
2025-12-04 11:51:32 +01:00
Pavel Zorin
c7a2138966 CI: uv lock check. Pre-test workflow. 2025-12-04 11:47:35 +01:00
Igor Ilic
8e67471d1e
Merge branch 'dev' into main-merge-vol4 2025-12-01 17:43:46 +01:00
Pavel Zorin
ba9ca46574 Increase the machine size 2025-12-01 15:23:59 +01:00
Pavel Zorin
7c9a78abea CI: Smaller embedding model for Ollama test 2025-12-01 14:39:45 +01:00
Igor Ilic
0bb4ece4d8 Merge branch 'main' into main-merge-vol4 2025-12-01 11:16:59 +01:00
Andrej Milicevic
0fe16939c1 remove code_graph example after dev merge 2025-11-26 12:32:17 +01:00
Pavel Zorin
83e0876066 added CI label 2025-11-21 15:04:32 +01:00
Pavel Zorin
0b20f13117 CI: Release drafter configuration 2025-11-21 15:01:09 +01:00
Pavel Zorin
d328f2f612
Chore: Acceptance Criteria for PRs (#1781)
<!-- .github/pull_request_template.md -->

## Description
Added Acceptance Criteria to Pull Request template

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [x] Other (please specify): chore

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [ ] **I have tested my changes thoroughly before submitting this PR**
- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
- [ ] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
2025-11-12 15:40:33 +01:00
Daulet Amirkhanov
056424f244
feat: fs-cache (#1645)
<!-- .github/pull_request_template.md -->

## Description
<!--
Please provide a clear, human-generated description of the changes in
this PR.
DO NOT use AI-generated descriptions. We want to understand your thought
process and reasoning.
-->

Implement File-Based Version of the Redis Cache Adapter

Description and acceptance criteria:

This PR introduces a file-based cache adapter as an alternative to the
existing Redis-based adapter. It provides the same core functionality
for caching session data and maintaining context across multiple user
interactions but stores data locally in files instead of Redis.

Because the shared Kùzu lock mechanism relies on Redis, it is not
supported in this implementation. If a lock is configured, the adapter
will raise an error to prevent misconfiguration.

You can test this adapter by enabling caching with the following
settings:

caching=True
cache_backend="fs"

When running multiple searches in a session, the system should correctly
maintain conversational context. For example:

- What is XY?
- Are you sure?
- What was my first question?

In this case, the adapter should preserve previous user–Cognee
interactions within the cache file so that follow-up queries remain
context-aware.


## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [x] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [x] **I have tested my changes thoroughly before submitting this PR**
- [x] **This PR contains minimal changes necessary to address the
issue/feature**
- [x] My code follows the project's coding standards and style
guidelines
- [x] I have added tests that prove my fix is effective or that my
feature works
- [x] I have added necessary documentation (if applicable)
- [x] All new and existing tests pass
- [x] I have searched existing PRs to ensure this change hasn't been
submitted already
- [x] I have linked any relevant issues in the description
- [x] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.

---------

Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
2025-11-12 15:34:30 +01:00
Pavel Zorin
b716c2e3c4 Chore: Acceptance Criteria for PRs 2025-11-12 13:35:04 +01:00
Igor Ilic
ba693b7ef4 chore: add shell to setting of anon_id in gh action 2025-11-11 19:58:30 +01:00
Igor Ilic
cc0e1a83ab refactor: Disable telemetry for all non telemetry tests 2025-11-11 19:55:29 +01:00
Igor Ilic
76bf99b8a6
Merge branch 'dev' into multi-tenancy 2025-11-11 12:51:19 +01:00
Andrej Milićević
b5a09dfb53
test: fix weighted edges example (#1745)
<!-- .github/pull_request_template.md -->

## Description
<!--
Please provide a clear, human-generated description of the changes in
this PR.
DO NOT use AI-generated descriptions. We want to understand your thought
process and reasoning.
-->
Changed the key used for openai, since we changed the keys in the
secrets.

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [ ] **I have tested my changes thoroughly before submitting this PR**
- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
- [ ] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
2025-11-11 11:39:57 +01:00
Igor Ilic
8a72de8f86 Merge branch 'dev' into multi-tenancy 2025-11-07 15:52:40 +01:00
Igor Ilic
59f758d5c2 feat: Add test for multi tenancy, add ability to share name for dataset across tenants for one user 2025-11-07 15:50:49 +01:00
Pavel Zorin
7d5d19347a CI: removed unnecessary ulimit 2025-11-07 11:11:05 +01:00
Pavel Zorin
49fbad9ec0 CI: Run release workflow on PR to main 2025-11-06 16:44:43 +01:00
Pavel Zorin
d5caba144c CI: Initial Release test workflow 2025-11-06 16:01:39 +01:00
Andrej Milicevic
62c599a499 test: add dev to CI config for weighted edges tests 2025-11-06 13:13:35 +01:00
Andrej Milicevic
6b81559bb6 test: changed endpoints in other tests 2025-11-06 13:04:01 +01:00
Andrej Milicevic
286584eef0 test: change embedding config 2025-11-06 12:35:37 +01:00
Andrej Milicevic
4567ffcfff test: change endpoint 2025-11-06 12:27:10 +01:00
Andrej Milicevic
5dc8d4e8a1 test: remove workflow_dispatch 2025-11-06 11:52:39 +01:00
Andrej Milicevic
cdb06d2157 test: add workflow_dispatch for test purposes 2025-11-06 11:50:58 +01:00
Andrej Milicevic
cc60141c8d test: change key for wighted edges example 2025-11-06 11:46:34 +01:00
Vasilije
69c7aa2559
test: add load tests (#1573)
<!-- .github/pull_request_template.md -->

## Description
<!--
Please provide a clear, human-generated description of the changes in
this PR.
DO NOT use AI-generated descriptions. We want to understand your thought
process and reasoning.
-->
Added a load test to out codebase. The test runs N adds of a pdf, then
cognifies them and runs N searches. Cognify and the searches are
measured, with certain constraints on how fast they should be. We can
tweak the values if necessary, these are values for the gpt-5-mini
model.

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
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## Pre-submission Checklist
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- [ ] **I have tested my changes thoroughly before submitting this PR**
- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
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guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
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submitted already
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- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.

<!-- CURSOR_SUMMARY -->
---

> [!NOTE]
> Introduce a load test for S3 ingest, cognify, and concurrent searches
with timing thresholds, and wire it into CI.
> 
> - **Tests**:
> - Add `cognee/tests/test_load.py` to measure end-to-end load: prunes
data/system, ingests from `s3://cognee-test-load-s3-bucket`, runs
`cognify` then concurrent GRAPH_COMPLETION searches, records timings
across reps, and asserts avg ≤ 8m and each run ≤ 10m.
> - **CI**:
> - Add `test-load` job in `.github/workflows/e2e_tests.yml`: installs
AWS deps, raises file descriptor limit, configures S3/env secrets, and
executes the new load test.
> 
> <sup>Written by [Cursor
Bugbot](https://cursor.com/dashboard?tab=bugbot) for commit
c7598122bb. This will update automatically
on new commits. Configure
[here](https://cursor.com/dashboard?tab=bugbot).</sup>
<!-- /CURSOR_SUMMARY -->
2025-11-06 08:42:01 +01:00
Vasilije
8cc55ac0b2
refactor: Enable multi user mode by default if graph and vector db pr… (#1695)
…oviders support it

<!-- .github/pull_request_template.md -->

## Description
Enable multi user mode by default for supported graph and vector DBs

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [x] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
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- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
- [ ] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
2025-11-06 08:40:06 +01:00
Vasilije
c7598122bb
Merge branch 'dev' into feature/cog-3165-add-load-tests 2025-11-05 14:49:29 +01:00
Igor Ilic
bee2fe3ba7
feat: Add initial custom pipeline (#1716)
<!-- .github/pull_request_template.md -->

## Description
Add run_custom_pipeline to have a way to execute a custom collection of tasks in Cognee

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [ ] **I have tested my changes thoroughly before submitting this PR**
- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
- [ ] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
2025-11-04 17:58:34 +01:00
Pavel Zorin
e11a8b9a51 CI: Added timeouts for all OS tests 2025-11-04 12:13:48 +01:00
Andrej Milicevic
a7d63df98c test: add extra aws dependency to load test 2025-11-03 18:15:18 +01:00
Andrej Milicevic
eb8df45dab test: increase file descriptor limit on workflow load test 2025-11-03 18:10:19 +01:00
Andrej Milicevic
d0a3bfd39f merged dev into this branch 2025-11-03 17:08:08 +01:00
Pavel Zorin
b8241e58e5 CI: Limit deletion integration tests to 60 minutes 2025-11-03 16:20:03 +01:00
Igor Ilic
baac00923c
Merge branch 'dev' into enable-multi-user-mode-default 2025-11-03 15:57:06 +01:00
Vasilije
8d7c4d5384
CI: (dev)Extract Windows and MacOS tests to separate job (#1715)
<!-- .github/pull_request_template.md -->

## Description
Reduces the amount of macOS and Windows jobs by running these tests only
for the latest python version in the list.
`different-os-tests-basic` runs tests on ubuntu and python `'["3.10.x",
"3.11.x", "3.12.x", "3.13.x"]'`
`different-os-tests-extended` runs windows and macOS tests for python
`3.13.x`.

<img width="255" height="385" alt="Screenshot 2025-10-31 at 12 36 11"
src="https://github.com/user-attachments/assets/73813d69-70a1-40a6-8197-b323ddc7d365"
/>

<!--
Please provide a clear, human-generated description of the changes in
this PR.
DO NOT use AI-generated descriptions. We want to understand your thought
process and reasoning.
-->

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [ ] **I have tested my changes thoroughly before submitting this PR**
- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
- [ ] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
2025-11-01 06:50:08 +01:00
Igor Ilic
f368a1a4d5 fix: set tests to not use multi-user mode 2025-10-31 20:10:05 +01:00
Pavel Zorin
737f792ac6 use api/embed for ollama api 2025-10-31 13:43:29 +01:00
Pavel Zorin
5d2d4e51f1 Ollama: Use openAI compatible embeggings API 2025-10-31 13:30:26 +01:00
Pavel Zorin
645bda38e3 chore: Fix Ollama test / update Ollama API usage 2025-10-31 13:23:49 +01:00
Pavel Zorin
a60e53964c
Potential fix for code scanning alert no. 399: Workflow does not contain permissions
Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
2025-10-31 12:37:38 +01:00