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## Description
When raising exceptions, in some places we lose the stack trace, or in
some cases when we raise custom exceptions - we also lose any metadata
from original exception that could help pinpoint the issue.
This PR updates exception throwing to use [`raise ...
from`](https://docs.python.org/3/reference/simple_stmts.html#raise),
which:
1. preserves stack trace
2. when we throw custom exception, indicates that our exception was
caused by XYZ exception
_this is a scoped down version for upcoming release, rest of the changes
are in #1518_
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…e cognee endpoint
<!-- .github/pull_request_template.md -->
## Description
Remove cognee endpoint from core as it clashes with cognee endpoint from
cognee-mcp
## Type of Change
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- [ ] New feature (non-breaking change that adds functionality)
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functionality to change)
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- [ ] Performance improvement
- [ ] Other (please specify):
## Screenshots/Videos (if applicable)
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feature works
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## DCO Affirmation
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## Description
update lock files
## Type of Change
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- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
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- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
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## Description
Reduce time PGVector is using async lock, by checking if collection
exists before taking async lock
## Type of Change
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- [ ] New feature (non-breaking change that adds functionality)
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- [ ] Other (please specify):
## Screenshots/Videos (if applicable)
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…Docker
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## Description
Resolves issue with kuzu graph data persistence for Cognee backend
docker
## Type of Change
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- [ ] Performance improvement
- [ ] Other (please specify):
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---------
Co-authored-by: Boris <boris@topoteretes.com>
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## Description
Merge main to dev
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## Description
Set gpt-5-mini back to default LLM as issues with it have been resolved
## Type of Change
<!-- Please check the relevant option -->
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- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
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## Description
Fix latest pydantic version issues
## Type of Change
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- [ ] Other (please specify):
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## DCO Affirmation
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## Description
Unified dataset resolution mechanisms across cognee
## Type of Change
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- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [x] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
## Pre-submission Checklist
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## Description
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`cognee-cli -ui` has accidentally added - when opening frontend
subprocess - an output decoding into text.
## What happens exactly
On the surface - frontend ui will be stuck loading.
Frontend process hangs as it's output is not being processed (we're
expecting bytes).
## This change
This change removes the `text=True` added to frontend subprocess
## Type of Change
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- [ ] New feature (non-breaking change that adds functionality)
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functionality to change)
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- [ ] Performance improvement
- [ ] Other (please specify):
## Screenshots/Videos (if applicable)
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## Description
Resolve Gemini Adapter issues:
1. resolve embedding batch issue,
2. Resolve slowness because gemini tokenizer was sending word per word
to Googles API to count tokens (using OpenAI's local tokenizer to count
tokens for Gemini now)
3. Update deprecated library and move to instructor
## Type of Change
<!-- Please check the relevant option -->
- [x] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
## Pre-submission Checklist
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guidelines
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feature works
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submitted already
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## DCO Affirmation
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## Description
Github Actions job:
https://github.com/topoteretes/cognee/actions/runs/18199627173/job/51815009426?pr=1493
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- [ ] Performance improvement
- [ ] Other (please specify):
## Screenshots/Videos (if applicable)
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## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
## Description
This pull request introduces a preview step to the `cognee delete`
command, fulfilling the requirements of issue #1366
When a user runs the delete command, it now first queries the database
to calculate the scope of the deletion and presents a summary (number of
datasets, data entries, users) before asking for final confirmation.
This improves the safety and usability of the command, preventing
accidental data loss.
This PR also adds the `--force` flag to bypass the preview, which is
useful for scripting and automation.
## Type of Change
- [x] New feature (non-breaking change that adds functionality)
- [ ] Bug fix (non-breaking change that fixes an issue)
## Changes Made
- **`cognee/cli/commands/delete_command.py`**: Modified to include the
preview logic. It now calls the counting function, displays the results,
and proceeds with deletion only after confirmation.
- **`cognee/modules/data/methods/get_deletion_counts.py`**: Added this
new file to contain the logic for querying the database and calculating
the deletion counts for datasets, data entries, and users.
## Testing
I have tested the changes through **Manual CLI Testing**: I ran the
`cognee delete` command with the `--dataset-name`, `--user-id`, and
`--all` flags to manually verify that the preview output is correct.
### Terminal Output
Here are screenshots of the command working with the all possible flags:
<img width="1898" height="1087" alt="cognee1"
src="https://github.com/user-attachments/assets/939aa4d0-748c-45e4-a2a6-f5e7982c1fc0"
/>
<img width="1788" height="748" alt="cognee2"
src="https://github.com/user-attachments/assets/213884be-cce1-4007-90f9-5e6d3a302ced"
/>
## Pre-submission Checklist
- [x] **I have tested my changes thoroughly before submitting this PR**
- [x] **This PR contains minimal changes necessary to address the
issue/feature**
- [x] My code follows the project's coding standards and style
guidelines
- [x] I have added tests that prove my feature works
- [ ] I have not added or changed documentation (as it was not required
for this CLI change)
- [x] I have searched existing PRs to ensure this change has been
submitted already
- [x] I have linked the relevant issue in the description
## Related Issues
Fixes#1366
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
This commit introduces the preview functionality for the command. The preview displays a summary of what will be deleted before asking for user confirmation.
The feature is fully functional for the following flags:
- / : Correctly counts the number of data entries within the specified dataset.
- : Correctly counts the total number of datasets, data entries, and users in the system.
The logic for the flag is a work in progress. The current implementation uses a placeholder and needs a method to query a user directly by their ID to be completed.
<!-- .github/pull_request_template.md -->
## Description
Remove MacOS13 support and CI/CD tests
## Type of Change
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- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Code refactoring
- [ ] Performance improvement
- [x] Other (please specify): Remove MacOS13 support
## Pre-submission Checklist
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## Description
ruff formatting
## Type of Change
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functionality to change)
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- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->
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feature works
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submitted already
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## Description
<!--
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this PR.
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process and reasoning.
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I've just added a new PDF parser, AdvancedPdfLoader. It uses the
unstructured library and does a much better job of handling PDFs,
especially with its layout-aware parsing, table preservation, and image
handling.
I also built in a safeguard: if unstructured isn't installed or throws
an error, it'll automatically fall back to the old PyPdfLoader so it
won't just crash. All the related unit tests and project dependencies
are taken care of, too.
https://github.com/topoteretes/cognee/issues/1342
## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Code refactoring
- [x] Performance improvement
- [ ] Other (please specify):
## Changes Made
<!-- List the specific changes made in this PR -->
- Added AdvancedPdfLoader class for enhanced PDF processing using the
unstructured library.
- Integrated fallback mechanism to PyPdfLoader in case of unstructured
library import failure or exceptions.
- Updated supported loaders to include AdvancedPdfLoader.
- Added unit tests for AdvancedPdfLoader to ensure functionality and
error handling.
- Updated poetry.lock and pyproject.toml to include new dependencies and
versions.
## Testing
<!-- Describe how you tested your changes -->
pytest -v ./cognee/tests/test_advanced_pdf_loader.py
## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->
## Pre-submission Checklist
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issue/feature**
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guidelines
- [x] I have added tests that prove my fix is effective or that my
feature works
- [x] I have added necessary documentation (if applicable)
- [x] All new and existing tests pass
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submitted already
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- [x] My commits have clear and descriptive messages
## Related Issues
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#issue_number" -->
## Additional Notes
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## Description
Use JSON_SCHEMA mode only for GPT-5 series models, it's a new mode from
OpenAI for structured output processing that they didn't properly handle
for older models
## Type of Change
<!-- Please check the relevant option -->
- [x] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [ ] **I have tested my changes thoroughly before submitting this PR**
- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
- [ ] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
# **Pull Request: Windows Compatibility and Error Handling
Improvements**
## Description
This PR addresses multiple Windows compatibility issues and improves
error handling across the cognee CLI and frontend, making the
application fully functional on Windows systems. The changes include:
- **Windows Process Termination**: Fixed crashes when terminating
spawned processes by using `taskkill` instead of Unix-specific `killpg`
functions
- **npm Detection**: Resolved npm command failures on Windows by adding
`shell=True` for PowerShell script execution
- **Frontend SSR**: Fixed "window is not defined" errors by implementing
dynamic imports for the graph visualization component
- **Cloud API**: Improved error handling for local installations by
returning graceful responses instead of raising exceptions
- **Connection Retry**: Added retry mechanism for frontend health checks
with better error messages
- **String Formatting**: Fixed mixed f-string formatting that caused
placeholder issues
- **CLI Entry Point**: Added `cognee` command alongside `cognee-cli` for
better user experience
These changes ensure cognee works seamlessly on Windows while
maintaining backward compatibility and improving overall robustness.
## Type of Change
- [x] Bug fix (non-breaking change that fixes an issue)
- [x] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->
## Pre-submission Checklist
- [x] **I have tested my changes thoroughly before submitting this PR**
- [x] **This PR contains minimal changes necessary to address the
issue/feature**
- [x] My code follows the project's coding standards and style
guidelines
- [x] I have added tests that prove my fix is effective or that my
feature works
- [x] I have added necessary documentation (if applicable)
- [x] All new and existing tests pass
- [x] I have searched existing PRs to ensure this change hasn't been
submitted already
- [x] I have linked any relevant issues in the description
- [x] My commits have clear and descriptive messages
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
---
## 🔧 **Technical Details**
### **Files Modified:**
- ✅ **Windows Process Termination**: `cognee/cli/_cognee.py`,
`cognee/tests/test_cognee_server_start.py`
- ✅ **npm Detection**: `cognee/api/v1/ui/ui.py`
- ✅ **Frontend SSR**:
`cognee-frontend/src/app/(graph)/GraphVisualization.tsx`
- ✅ **Cloud API**: `cognee/api/v1/cloud/routers/get_checks_router.py`
- ✅ **Connection Retry**: `cognee-frontend/src/utils/fetch.ts`
- ✅ **String Formatting**:
`cognee/infrastructure/llm/prompts/read_query_prompt.py`
- ✅ **CLI Entry Point**: `pyproject.toml`
### **Key Changes:**
1. **Process Termination**: Added Windows-compatible `taskkill` commands
alongside Unix `killpg`
2. **npm Commands**: Added `shell=True` for Windows PowerShell script
execution
3. **Dynamic Imports**: Implemented `ssr: false` for graph visualization
component
4. **Graceful Errors**: Return JSON responses instead of raising
exceptions for local mode
5. **Retry Logic**: Added 5-retry mechanism with 1-second delays for
health checks
6. **String Formatting**: Fixed mixed f-string and old-style formatting
issues
7. **CLI Commands**: Added `cognee` entry point alongside `cognee-cli`
### **Testing Results:**
- ✅ All existing tests pass
- ✅ Windows process termination works correctly
- ✅ npm detection and commands work on Windows
- ✅ Frontend loads without SSR errors
- ✅ Cloud API returns graceful responses for local mode
- ✅ Frontend connection retries work properly
- ✅ Code formatting and linting checks pass
This PR makes cognee fully functional on Windows while improving error
handling and user experience across all platforms.
<!-- .github/pull_request_template.md -->
## Description
Add update method end endpoint for Cognee
## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [x] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [x] **I have tested my changes thoroughly before submitting this PR**
- [x] **This PR contains minimal changes necessary to address the
issue/feature**
- [x] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [x] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
<!-- CURSOR_SUMMARY -->
---
> [!NOTE]
> <sup>[Cursor Bugbot](https://cursor.com/dashboard?tab=bugbot) is
generating a summary for commit
9524109029. Configure
[here](https://cursor.com/dashboard?tab=bugbot).</sup>
<!-- /CURSOR_SUMMARY -->
<!-- .github/pull_request_template.md -->
## Description
Add return value of creating role and tenant, add detailed permissions
example to Cognee
## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [x] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [x] **I have tested my changes thoroughly before submitting this PR**
- [x] **This PR contains minimal changes necessary to address the
issue/feature**
- [x] My code follows the project's coding standards and style
guidelines
- [x] I have added tests that prove my fix is effective or that my
feature works
- [x] I have added necessary documentation (if applicable)
- [x] All new and existing tests pass
- [x] I have searched existing PRs to ensure this change hasn't been
submitted already
- [x] I have linked any relevant issues in the description
- [x] My commits have clear and descriptive messages
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
---------
Co-authored-by: Boris <boris@topoteretes.com>
Co-authored-by: Hande <159312713+hande-k@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
Resolve issues with gpt 5 models for structured outputs by forcing JSON
mode in instructor
## Type of Change
<!-- Please check the relevant option -->
- [x] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->
## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [x] **I have tested my changes thoroughly before submitting this PR**
- [x] **This PR contains minimal changes necessary to address the
issue/feature**
- [x] My code follows the project's coding standards and style
guidelines
- [x] I have added tests that prove my fix is effective or that my
feature works
- [x] I have added necessary documentation (if applicable)
- [x] All new and existing tests pass
- [x] I have searched existing PRs to ensure this change hasn't been
submitted already
- [x] I have linked any relevant issues in the description
- [x] My commits have clear and descriptive messages
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
