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4387 commits

Author SHA1 Message Date
Igor Ilic
0c825b96ff
Merge branch 'dev' into multi-tenant-neo4j 2025-11-28 12:55:48 +01:00
Igor Ilic
ddf802ff54 chore: Add migration of unique constraint for SQLite 2025-11-27 18:38:00 +01:00
Igor Ilic
1ff6a72fc7 refactor: set default value to empty dictionary 2025-11-26 16:45:18 +01:00
hajdul88
508165e883
feature: Introduces wide subgraph search in graph completion and improves QA speed (#1736)
<!-- .github/pull_request_template.md -->

This PR introduces wide vector and graph structure filtering
capabilities. With these changes, the graph completion retriever and all
retrievers that inherit from it will now filter relevant vector elements
and subgraphs based on the query. This improvement significantly
increases search speed for large graphs while maintaining—and in some
cases slightly improving—accuracy.

Changes in This PR:

-Introduced new wide_search_top_k parameter: Controls the initial search
space size

-Added graph adapter level filtering method: Enables relevant subgraph
filtering while maintaining backward compatibility. For community or
custom graph adapters that don't implement this method, the system
gracefully falls back to the original search behavior.

-Updated modal dashboard and evaluation framework: Fixed compatibility
issues.
Added comprehensive unit tests: Introduced unit tests for
brute_force_triplet_search (previously untested) and expanded the
CogneeGraph test suite.

Integration tests: Existing integration tests verify end-to-end search
functionality (no changes required).

Acceptance Criteria and Testing

To verify the new search behavior, run search queries with different
wide_search_top_k parameters while logging is enabled:
None: Triggers a full graph search (default behavior)
1: Projects a minimal subgraph (demonstrates maximum filtering)
Custom values: Test intermediate levels of filtering

Internal Testing and results:
Performance and accuracy benchmarks are available upon request. The
implementation demonstrates measurable improvements in query latency for
large graphs without sacrificing result quality.

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [x] Code refactoring
- [x] Performance improvement
- [ ] Other (please specify):

## Screenshots/Videos (if applicable)
None

## Pre-submission Checklist
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---------

Co-authored-by: Pavel Zorin <pazonec@yandex.ru>
2025-11-26 15:18:53 +01:00
Igor Ilic
cf9edf2663 chore: Add migration for new dataset database model field 2025-11-25 18:03:35 +01:00
Igor Ilic
69777ef0a5 feat: Add ability to handle custom connection resolution to avoid storing security critical data in rel dbx 2025-11-25 17:53:21 +01:00
Igor Ilic
5f3b776406 chore: add todo for enhancing db connections 2025-11-25 16:38:34 +01:00
Igor Ilic
2e02aafbae refactor: Remove unused imports 2025-11-25 15:55:36 +01:00
Igor Ilic
593f17fcdc refactor: Add better handling of configuration for dataset to database handler 2025-11-25 15:41:01 +01:00
Igor Ilic
64a3ee96c4 refactor: Create new abstraction for dataset database mapping and handling 2025-11-24 20:31:28 +01:00
hajdul88
c2c64a417c
fix: fixes ontology api endpoint tests + poetry lock(#1824)
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## Description

This PR fixes the failing CI tests related to the new ontology api
endpoint.


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2025-11-24 17:44:51 +01:00
Boris
58fa95605a
version: 0.5.0.dev0 (#1827)
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2025-11-24 16:19:13 +01:00
Boris Arzentar
af8c55e82b
version: 0.5.0.dev0 2025-11-24 16:16:47 +01:00
Vasilije
2a005d6e1f
feat: make notebook cognee usage identical across uis (#1747)
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## Description
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- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Performance improvement
- [ ] Other (please specify):

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2025-11-22 14:50:01 -08:00
Vasilije
e81613ea6e
feat: add ontology endpoint in REST API (#1724)
## Description

This PR resolves #1446 by adding support to upload ontology files and
refer to them in the cognee POST request.

  Implementation Details:
- New endpoint: POST /api/v1/ontologies for ontology file upload with a
simple key parameter
  that can be referenced in POST cognify requests
- File storage: Ontology files are stored in /tmp/ontologies/{user_id}/
with metadata
  management
- New service: OntologyService created for file management and metadata
handling
- Resolver: RDFLibOntologyResolver modified to handle file-like objects.


## Type of Change
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- [X] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
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- [ ] Performance improvement
- [ ] Other (please specify):

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## DCO Affirmation
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the terms of the Topoteretes Developer Certificate of Origin.
2025-11-22 14:49:09 -08:00
Vasilije
2f2a4487f0
feat: csv ingestion & chunking (#1574)
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## Description
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Create a dedicated CSV ingestion path with a custom loader and custom
chunker that preserves row-column relationships in the produced chunks.
#1348

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- [x] Performance improvement
- [x] Other (please specify):

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## DCO Affirmation
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2025-11-22 14:48:27 -08:00
Vasilije
bcf1d4890f
feat: add instructor mode env variable and config parameter (#1789)
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Added a variable to control which instructor mode we use. The defaults
for each adapter are used, but a user can override this if the set the
`LLM_INSTRUCTOR_MODE` env variable.

## Type of Change
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- [x] New feature (non-breaking change that adds functionality)
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- [ ] Performance improvement
- [ ] Other (please specify):

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2025-11-22 14:18:40 -08:00
Boris
ae227106ef
Merge branch 'dev' into feature/cog-3155-engineering-make-notebook-cognee-usage-identical-across-uis 2025-11-22 12:19:52 +01:00
Andrej Milicevic
204f9c2e4a fix: PR comment changes 2025-11-21 16:20:19 +01:00
Igor Ilic
0800810713 refactor: remove print statements 2025-11-20 18:46:02 +01:00
Igor Ilic
68d81a9125 refactor: Update multi-user database dataset creation mechanism 2025-11-20 18:37:15 +01:00
hajdul88
2176ec16b8
chore: changes url for crawler tests (#1816)
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Updates crawler test url to avoid blocking and unavailable sites in CI.

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2025-11-20 17:03:36 +01:00
Andrej Milicevic
4e880eca84 chore: update env template 2025-11-20 15:47:22 +01:00
Fahad Shoaib
8cfb6c41ee fix: remove async from ontology endpoint test functions 2025-11-20 15:54:09 +05:00
Fahad Shoaib
30e3971d44 fix: add auth headers to ontology upload request and enhance ontology content 2025-11-20 15:36:15 +05:00
hajdul88
fe55071849
Feature/cog 3407 fixing integration test in ci (#1810)
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## Description
This PR should fix the web crawler integration test issue in our CI

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2025-11-19 15:33:50 +01:00
Boris
4888cd54b8
Merge branch 'dev' into feature/cog-3155-engineering-make-notebook-cognee-usage-identical-across-uis 2025-11-17 19:25:00 +01:00
hajdul88
ccea3c39d4
Merge branch 'dev' into feature/ontology-param-rest 2025-11-17 09:40:37 +01:00
EricXiao
688857ccc3
Merge branch 'dev' into feat/csv-ingestion 2025-11-17 14:42:20 +08:00
EricXiao
983bfae4fc chore: remove unnecessary csv file type
Signed-off-by: EricXiao <taoiaox@gmail.com>
2025-11-17 14:41:55 +08:00
Fahad Shoaib
1ded09d0f9 fix: fixed test ontology file content. Added tests to support multiple files and improved validation. 2025-11-15 00:06:55 +05:00
Fahad Shoaib
01f1c099cc test: enhance server start test with ontology upload verification
- Extend test_cognee_server_start to upload ontology and verify integration
- Move test_ontology_endpoint from tests/ to tests/unit/api/
2025-11-14 22:20:54 +05:00
Fahad Shoaib
844b8d635a feat: enhance ontology handling to support multiple uploads and retrievals 2025-11-14 22:13:00 +05:00
Pavel Zorin
de6b842d02
Fix: Remove cognee script from pyproject.toml (#1785)
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## Description
Removes `cognee` script entry from the pyproject.toml. This might affect
the MCP server startup.

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2025-11-14 13:04:51 +01:00
Andrej Milicevic
205f5a9e0c fix: Fix based on PR comments 2025-11-14 11:05:39 +01:00
Vasilije
6b88f925af
Fix: MCP remove cognee.add() preprequisite from the doc (#1788)
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## Description
This prerequisite is not required because `cognee.add()` is invoked in
the `cognify`. This confuses Claude
## Type of Change
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2025-11-14 10:09:43 +01:00
EricXiao
01f9dd957c
Merge branch 'dev' into feat/csv-ingestion 2025-11-14 15:24:31 +08:00
EricXiao
661c194f97 fix: Resolve issue with csv suffix classification
Signed-off-by: EricXiao <taoiaox@gmail.com>
2025-11-14 15:21:47 +08:00
EricXiao
4c609d6074 Merge branch 'dev' into feat/csv-ingestion
Signed-off-by: EricXiao <taoiaox@gmail.com>
2025-11-14 14:46:11 +08:00
Andrej Milicevic
2337d36f7b feat: add variable to control instructor mode 2025-11-13 18:25:07 +01:00
Pavel Zorin
c6454338f9 Fix: MCP remove cognee.add() preprequisite from the doc 2025-11-13 17:35:16 +01:00
Andrej Milićević
f882fb7e0e
fix: remove duplicate mistral adapter creation (#1787)
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2025-11-13 16:59:45 +01:00
Andrej Milicevic
3b7d030817 fix: remove duplicate mistral adapter creation 2025-11-13 16:06:07 +01:00
Pavel Zorin
f9cde2f375 Fix: Remove cognee script from pyproject.toml 2025-11-13 13:35:07 +01:00
Igor Ilic
d566541a4b
Merge branch 'dev' into multi-tenant-neo4j 2025-11-12 21:32:40 +01:00
Igor Ilic
a5bd504daa
Relational DB migration test search (#1752)
<!-- .github/pull_request_template.md -->

## Description
Add deterministic Cognee search test after rel DB migration. 
Test gathers all relevant relationships regarding Customers and their
Invoices from relational DB that was migrated and then tries to get the
same results with Cognee search.

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- [ ] Performance improvement
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2025-11-12 21:32:22 +01:00
Igor Ilic
6bb642d6b8 refactor: Start adding multi-user functions to db interfaces 2025-11-12 21:24:40 +01:00
Igor Ilic
0176cd5a68 refactor: Add todo point 2025-11-12 18:01:44 +01:00
Igor Ilic
b017fcc8d0 refactor: Make neo4j auto scaling more readable 2025-11-12 17:58:27 +01:00
Pavel Zorin
d328f2f612
Chore: Acceptance Criteria for PRs (#1781)
<!-- .github/pull_request_template.md -->

## Description
Added Acceptance Criteria to Pull Request template

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [x] Other (please specify): chore

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [ ] **I have tested my changes thoroughly before submitting this PR**
- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
- [ ] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
2025-11-12 15:40:33 +01:00