Commit graph

5766 commits

Author SHA1 Message Date
BukeLy
ad68624d02 feat: PostgreSQL model isolation and auto-migration
Why this change is needed:
PostgreSQL vector storage needs model isolation to prevent dimension
conflicts when different workspaces use different embedding models.
Without this, the first workspace locks the vector dimension for all
subsequent workspaces, causing failures.

How it solves it:
- Implements dynamic table naming with model suffix: {table}_{model}_{dim}d
- Adds setup_table() method mirroring Qdrant's approach for consistency
- Implements 4-branch migration logic: both exist -> warn, only new -> use,
  neither -> create, only legacy -> migrate
- Batch migration: 500 records/batch (same as Qdrant)
- No automatic rollback to support idempotent re-runs

Impact:
- PostgreSQL tables now isolated by embedding model and dimension
- Automatic data migration from legacy tables on startup
- Backward compatible: model_name=None defaults to "unknown"
- All SQL operations use dynamic table names

Testing:
- 6 new tests for PostgreSQL migration (100% pass)
- Tests cover: naming, migration trigger, scenarios 1-3
- 3 additional scenario tests added for Qdrant completeness

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-19 22:54:37 +08:00
BukeLy
df5aacb545 feat: Qdrant model isolation and auto-migration
Why this change is needed:
To implement vector storage model isolation for Qdrant, allowing different workspaces to use different embedding models without conflict, and automatically migrating existing data.

How it solves it:
- Modified QdrantVectorDBStorage to use model-specific collection suffixes
- Implemented automated migration logic from legacy collections to new schema
- Fixed Shared-Data lock re-entrancy issue in multiprocess mode
- Added comprehensive tests for collection naming and migration triggers

Impact:
- Existing users will have data automatically migrated on next startup
- New workspaces will use isolated collections based on embedding model
- Fixes potential lock-related bugs in shared storage

Testing:
- Added tests/test_qdrant_migration.py passing
- Verified migration logic covers all 4 states (New/Legacy existence combinations)
2025-11-19 18:47:38 +08:00
BukeLy
13f2440bbf feat: enhance BaseVectorStorage for model isolation
Why this change is needed:
To enforce consistent naming and migration strategy across all vector storages.

How it solves it:
- Added _generate_collection_suffix() helper
- Added _get_legacy_collection_name() and _get_new_collection_name() interfaces

Impact:
Prepares storage implementations for multi-model support.

Testing:
Added tests/test_base_storage_integrity.py passing.
2025-11-19 02:15:22 +08:00
BukeLy
5c10d3d58e feat: enhance EmbeddingFunc with model_name support
Why this change is needed:
To support vector storage model isolation, we need to track which model is used for embeddings and generate unique identifiers for collections/tables.

How it solves it:
- Added model_name field to EmbeddingFunc
- Added get_model_identifier() method to generate sanitized suffix
- Added unit tests to verify behavior

Impact:
Enables subsequent changes in storage backends to isolate data by model.

Testing:
Added tests/test_embedding_func.py passing.
2025-11-19 02:11:39 +08:00
yangdx
d16c7840ab Bump API version to 0256 2025-11-18 23:15:31 +08:00
yangdx
e77340d4a1 Adjust chunking parameters to match the default environment variable settings 2025-11-18 23:14:50 +08:00
yangdx
24423c9215 Merge branch 'fix_chunk_comment' 2025-11-18 22:47:23 +08:00
yangdx
1bfa1f81cb Merge branch 'main' into fix_chunk_comment 2025-11-18 22:38:50 +08:00
yangdx
9c10c87554 Fix linting 2025-11-18 22:38:43 +08:00
yangdx
9109509b1a Merge branch 'dev-postgres-vchordrq' 2025-11-18 22:25:35 +08:00
yangdx
dbae327a17 Merge branch 'main' into dev-postgres-vchordrq 2025-11-18 22:13:27 +08:00
yangdx
b583b8a59d Merge branch 'feature/postgres-vchordrq-indexes' into dev-postgres-vchordrq 2025-11-18 22:05:48 +08:00
yangdx
3096f844fb fix(postgres): allow vchordrq.epsilon config when probes is empty
Previously, configure_vchordrq would fail silently when probes was empty
(the default), preventing epsilon from being configured. Now each parameter
is handled independently with conditional execution, and configuration
errors fail-fast instead of being swallowed.

This fixes the documented epsilon setting being impossible to use in the
default configuration.
2025-11-18 21:58:36 +08:00
EightyOliveira
dacca334e0 refactor(chunking): rename params and improve docstring for chunking_by_token_size 2025-11-18 15:46:28 +08:00
wmsnp
f4bf5d279c
fix: add logger to configure_vchordrq() and format code 2025-11-18 15:31:08 +08:00
Daniel.y
dfbc97363c
Merge pull request #2369 from HKUDS/workspace-isolation
Feat: Add Workspace Isolation for Pipeline Status and In-memory Storage
2025-11-18 15:21:10 +08:00
yangdx
702cfd2981 Fix document deletion concurrency control and validation logic
• Clarify job naming for single vs batch deletion
• Update job name validation in busy pipeline check
2025-11-18 13:59:24 +08:00
yangdx
656025b75e Rename GitHub workflow from "Tests" to "Offline Unit Tests" 2025-11-18 13:36:00 +08:00
yangdx
7e9c8ed1e8 Rename test classes to prevent warning from pytest
• TestResult → ExecutionResult
• TestStats → ExecutionStats
• Update class docstrings
• Update type hints
• Update variable references
2025-11-18 13:33:05 +08:00
yangdx
4048fc4b89 Fix: auto-acquire pipeline when idle in document deletion
• Track if we acquired the pipeline lock
• Auto-acquire pipeline when idle
• Only release if we acquired it
• Prevent concurrent deletion conflicts
• Improve deletion job validation
2025-11-18 13:25:13 +08:00
yangdx
1745b30a5f Fix missing workspace parameter in update flags status call 2025-11-18 12:55:48 +08:00
yangdx
f8dd2e0724 Fix namespace parsing when workspace contains colons
• Use rsplit instead of split
• Handle colons in workspace names
2025-11-18 12:23:05 +08:00
yangdx
472b498ade Replace pytest group reference with explicit dependencies in evaluation
• Remove pytest group dependency
• Add explicit pytest>=8.4.2
• Add pytest-asyncio>=1.2.0
• Add pre-commit directly
• Fix potential circular dependency
2025-11-18 12:17:21 +08:00
yangdx
a11912ffa5 Add testing workflow guidelines to basic development rules
* Define pytest marker patterns
* Document CI/CD test execution
* Specify offline vs integration tests
* Add test isolation best practices
* Reference testing guidelines doc
2025-11-18 11:54:19 +08:00
yangdx
41bf6d0283 Fix test to use default workspace parameter behavior 2025-11-18 11:51:17 +08:00
wmsnp
d07023c962
feat(postgres_impl): add vchordrq vector index support and unify vector index creation logic 2025-11-18 11:45:16 +08:00
yangdx
4ea2124001 Add GitHub CI workflow and test markers for offline/integration tests
- Add GitHub Actions workflow for CI
- Mark integration tests requiring services
- Add offline test markers for isolated tests
- Skip integration tests by default
- Configure pytest markers and collection
2025-11-18 11:36:10 +08:00
yangdx
4fef731f37 Standardize test directory creation and remove tempfile dependency
• Remove unused tempfile import
• Use consistent project temp/ structure
• Clean up existing directories first
• Create directories with os.makedirs
• Use descriptive test directory names
2025-11-18 10:39:54 +08:00
yangdx
1fe05df211 Refactor test configuration to use pytest fixtures and CLI options
• Add pytest command-line options
• Create session-scoped fixtures
• Remove hardcoded environment vars
• Update test function signatures
• Improve configuration priority
2025-11-18 10:31:53 +08:00
yangdx
6ae0c14438 test: add concurrent execution to workspace isolation test
• Add async sleep to mock functions
• Test concurrent ainsert operations
• Use asyncio.gather for parallel exec
• Measure concurrent execution time
2025-11-18 10:17:34 +08:00
yangdx
6cef8df159 Reduce log level and improve workspace mismatch message clarity
• Change warning to info level
• Simplify workspace mismatch wording
2025-11-18 08:25:21 +08:00
yangdx
fc9f7c705e Fix linting 2025-11-18 08:07:54 +08:00
yangdx
f83b475ab1 Remove Dependabot configuration file
• Delete .github/dependabot.yml
• Remove weekly pip updates
2025-11-18 01:42:15 +08:00
yangdx
21ad990e36 Improve workspace isolation tests with better parallelism checks and cleanup
• Add finalize_share_data cleanup
• Refactor lock timing measurement
• Add timeline overlap validation
• Include purpose/scope documentation
• Fix tokenizer integration
2025-11-18 01:38:31 +08:00
yangdx
5da82bb096 Add pre-commit to pytest dependencies and format test code
• Add pre-commit to pytest extra deps
• Update lock file dependencies
2025-11-18 00:42:04 +08:00
yangdx
99262adaaa Enhance workspace isolation test with distinct mock data and persistence
• Use different mock LLM per workspace
• Add persistent test directory
• Create workspace-specific responses
• Skip cleanup for inspection
2025-11-18 00:38:31 +08:00
yangdx
b7b8d15632 Refactor pytest dependencies into separate optional group
- Extract pytest deps to own group
- Reference pytest group in evaluation
- Add pytest config to pyproject.toml
- Update uv.lock with new structure
2025-11-17 23:52:13 +08:00
yangdx
1874cfaf73 Fix linting 2025-11-17 23:32:38 +08:00
Daniel.y
3806892a40
Merge pull request #2371 from BukeLy/pytest-style-conversion
test: Convert test_workspace_isolation.py to pytest style
2025-11-17 23:28:56 +08:00
BukeLy
1a1837028a docs: Update test file docstring to reflect all 11 test scenarios
Previous docstring mentioned only 4 scenarios but the file actually contains
11 comprehensive test cases. Updated to list all scenarios:

1. Pipeline Status Isolation
2. Lock Mechanism (Parallel/Serial)
3. Backward Compatibility
4. Multi-Workspace Concurrency
5. NamespaceLock Re-entrance Protection
6. Different Namespace Lock Isolation
7. Error Handling
8. Update Flags Workspace Isolation
9. Empty Workspace Standardization
10. JsonKVStorage Workspace Isolation
11. LightRAG End-to-End Workspace Isolation

This makes the file header accurately describe its contents.
2025-11-17 19:02:46 +08:00
BukeLy
3ec736932e test: Enhance E2E workspace isolation detection with content verification
Add specific content assertions to detect cross-contamination between workspaces.
Previously only checked that workspaces had different data, now verifies:

- Each workspace contains only its own text content
- Each workspace does NOT contain the other workspace's content
- Cross-contamination would be immediately detected

This ensures the test can find problems, not just pass.

Changes:
- Add assertions for "Artificial Intelligence" and "Machine Learning" in project_a
- Add assertions for "Deep Learning" and "Neural Networks" in project_b
- Add negative assertions to verify data leakage doesn't occur
- Add detailed output messages showing what was verified

Testing:
- pytest tests/test_workspace_isolation.py::test_lightrag_end_to_end_workspace_isolation
- Test passes with proper content isolation verified
2025-11-17 18:55:45 +08:00
BukeLy
a990c1d40b fix: Correct Mock LLM output format in E2E test
Why this change is needed:
The mock LLM function was returning JSON format, which is incorrect
for LightRAG's entity extraction. This caused "Complete delimiter
can not be found" warnings and resulted in 0 entities/relations
being extracted during tests.

How it solves it:
- Updated mock_llm_func to return correct tuple-delimited format
- Format: entity<|#|>name<|#|>type<|#|>description
- Format: relation<|#|>source<|#|>target<|#|>keywords<|#|>description
- Added proper completion delimiter: <|COMPLETE|>
- Now correctly extracts 2 entities and 1 relation

Impact:
- E2E test now properly validates entity/relation extraction
- No more "Complete delimiter" warnings
- Tests can now detect extraction-related bugs
- Graph files contain actual data (2 nodes, 1 edge) instead of empty graphs

Testing:
All 11 tests pass in 2.42s with proper entity extraction:
- Chunk 1 of 1 extracted 2 Ent + 1 Rel (previously 0 Ent + 0 Rel)
- Graph files now 2564 bytes (previously 310 bytes)
2025-11-17 18:49:54 +08:00
BukeLy
288498ccdc test: Convert test_workspace_isolation.py to pytest style
Why this change is needed:
The test file was using a custom TestResults class for tracking test
execution and results, which is not standard practice for pytest-based
test suites. This makes the tests harder to integrate with CI/CD pipelines
and reduces compatibility with pytest plugins and tooling.

How it solves it:
- Removed custom TestResults class and manual result tracking
- Added @pytest.mark.asyncio decorator to all async test functions
- Converted all results.add() calls to standard pytest assert statements
- Added pytest fixture (setup_shared_data) for common test setup
- Removed custom main() runner (pytest handles test discovery/execution)
- Kept all test logic, assertions, and debugging print statements intact

Impact:
- All 11 test functions maintain identical behavior and coverage
- Tests now follow pytest conventions and integrate with pytest ecosystem
- Test output is cleaner and more informative with pytest's reporting
- Easier to run selective tests using pytest's filtering options

Testing:
Verified by running: uv run pytest tests/test_workspace_isolation.py -v
Result: All 11 tests passed in 2.41s
2025-11-17 18:24:52 +08:00
yangdx
ddc76f0c80 Merge branch 'main' into workspace-isolation 2025-11-17 17:08:07 +08:00
yangdx
9262f66d13 Bump API version to 0255 2025-11-17 17:07:18 +08:00
yangdx
393f880311 Improve LightRAG initialization checker tool with better usage docs
• Add workspace param to get_namespace_data
• Update docstring with proper usage example
• Simplify demo to show correct workflow
• Remove confusing before/after comparison
• Clarify tool should run after init
2025-11-17 15:42:54 +08:00
yangdx
9d7b7981ce Add pipeline status validation before document deletion 2025-11-17 14:58:10 +08:00
yangdx
98e964dfc4 Fix initialization instructions in check_lightrag_setup function 2025-11-17 14:27:26 +08:00
yangdx
6d6716e9f8 Add _default_workspace to shared storage finalization
- Add _default_workspace to global vars
- Set _default_workspace to None on cleanup
- Ensure complete resource cleanup
- Fix missing workspace finalization
2025-11-17 13:46:46 +08:00
yangdx
cf73cb4d24 Remove unused variables from workspace isolation test
* Remove initial_ok check
* Remove both_set verification
2025-11-17 13:13:12 +08:00