cognee/CONTRIBUTING.md
Boris fbc9cefdab
Version 0.1.21 (#431)
* feat: Add error handling in case user is already part of database and permission already given to group

Added error handling in case permission is already given to group and user is already part of group

Feature COG-656

* feat: Add user verification for accessing data

Verify user has access to data before returning it

Feature COG-656

* feat: Add compute search to cognee

Add compute search to cognee which makes searches human readable

Feature COG-656

* feat: Add simple instruction for system prompt

Add simple instruction for system prompt

Feature COG-656

* pass pydantic model tocognify

* feat: Add unauth access error to getting data

Raise unauth access error when trying to read data without access

Feature COG-656

* refactor: Rename query compute to query completion

Rename searching type from compute to completion

Refactor COG-656

* chore: Update typo in code

Update typo in string in code

Chore COG-656

* Add mcp to cognee

* Add simple README

* Update cognee-mcp/mcpcognee/__main__.py

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

* Create dockerhub.yml

* Update get_cognify_router.py

* fix: Resolve reflection issue when running cognee a second time after pruning data

When running cognee a second time after pruning data some metadata doesn't get pruned.
This makes cognee believe some tables exist that have been deleted

Fix

* fix: Add metadata reflection fix to sqlite as well

Added fix when reflecting metadata to sqlite as well

Fix

* update

* Revert "fix: Add metadata reflection fix to sqlite as well"

This reverts commit 394a0b2dfb.

* COG-810 Implement a top-down dependency graph builder tool (#268)

* feat: parse repo to call graph

* Update/repo_processor/top_down_repo_parse.py task

* fix: minor improvements

* feat: file parsing jedi script optimisation

---------

* Add type to DataPoint metadata (#364)

* Add type to DataPoint metadata

* Add missing index_fields

* Use DataPoint UUID type in pgvector create_data_points

* Make _metadata mandatory everywhere

* Fixes

* Fixes to our demo

* feat: Add search by dataset for cognee

Added ability to search by datasets for cognee users

Feature COG-912

* feat: outsources chunking parameters to extract chunk from documents … (#289)

* feat: outsources chunking parameters to extract chunk from documents task

* fix: Remove backend lock from UI

Removed lock that prevented using multiple datasets in cognify

Fix COG-912

* COG 870 Remove duplicate edges from the code graph (#293)

* feat: turn summarize_code into generator

* feat: extract run_code_graph_pipeline, update the pipeline

* feat: minimal code graph example

* refactor: update argument

* refactor: move run_code_graph_pipeline to cognify/code_graph_pipeline

* refactor: indentation and whitespace nits

* refactor: add deprecated use comments and warnings

---------

Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Boris <boris@topoteretes.com>

* test: Added test for getting of documents for search

Added test to verify getting documents related to datasets intended for search

Test COG-912

* Structured code summarization (#375)

* feat: turn summarize_code into generator

* feat: extract run_code_graph_pipeline, update the pipeline

* feat: minimal code graph example

* refactor: update argument

* refactor: move run_code_graph_pipeline to cognify/code_graph_pipeline

* refactor: indentation and whitespace nits

* refactor: add deprecated use comments and warnings

* Structured code summarization

* add missing prompt file

* Remove summarization_model argument from summarize_code and fix typehinting

* minor refactors

---------

Co-authored-by: lxobr <122801072+lxobr@users.noreply.github.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Boris <boris@topoteretes.com>

* fix: Resolve issue with cognify router graph model default value

Resolve issue with default value for graph model in cognify endpoint

Fix

* chore: Resolve typo in getting documents code

Resolve typo in code

chore COG-912

* Update .github/workflows/dockerhub.yml

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

* Update .github/workflows/dockerhub.yml

* Update .github/workflows/dockerhub.yml

* Update .github/workflows/dockerhub.yml

* Update get_cognify_router.py

* fix: Resolve syntax issue with cognify router

Resolve syntax issue with cognify router

Fix

* feat: Add ruff pre-commit hook for linting and formatting

Added formatting and linting on pre-commit hook

Feature COG-650

* chore: Update ruff lint options in pyproject file

Update ruff lint options in pyproject file

Chore

* test: Add ruff linter github action

Added linting check with ruff in github actions

Test COG-650

* feat: deletes executor limit from get_repo_file_dependencies

* feat: implements mock feature in LiteLLM engine

* refactor: Remove changes to cognify router

Remove changes to cognify router

Refactor COG-650

* fix: fixing boolean env for github actions

* test: Add test for ruff format for cognee code

Test if code is formatted for cognee

Test COG-650

* refactor: Rename ruff gh actions

Rename ruff gh actions to be more understandable

Refactor COG-650

* chore: Remove checking of ruff lint and format on push

Remove checking of ruff lint and format on push

Chore COG-650

* feat: Add deletion of local files when deleting data

Delete local files when deleting data from cognee

Feature COG-475

* fix: changes back the max workers to 12

* feat: Adds mock summary for codegraph pipeline

* refacotr: Add current development status

Save current development status

Refactor

* Fix langfuse

* Fix langfuse

* Fix langfuse

* Add evaluation notebook

* Rename eval notebook

* chore: Add temporary state of development

Add temp development state to branch

Chore

* fix: Add poetry.lock file, make langfuse mandatory

Added langfuse as mandatory dependency, added poetry.lock file

Fix

* Fix: fixes langfuse config settings

* feat: Add deletion of local files made by cognee through data endpoint

Delete local files made by cognee when deleting data from database through endpoint

Feature COG-475

* test: Revert changes on test_pgvector

Revert changes on test_pgvector which were made to test deletion of local files

Test COG-475

* chore: deletes the old test for the codegraph pipeline

* test: Add test to verify deletion of local files

Added test that checks local files created by cognee will be deleted and those not created by cognee won't

Test COG-475

* chore: deletes unused old version of the codegraph

* chore: deletes unused imports from code_graph_pipeline

* Ingest non-code files

* Fixing review findings

* Ingest non-code files (#395)

* Ingest non-code files

* Fixing review findings

* test: Update test regarding message

Update assertion message, add veryfing of file existence

* Handle retryerrors in code summary (#396)

* Handle retryerrors in code summary

* Log instead of print

* fix: updates the acreate_structured_output

* chore: Add logging to sentry when file which should exist can't be found

Log to sentry that a file which should exist can't be found

Chore COG-475

* Fix diagram

* fix: refactor mcp

* Add Smithery CLI installation instructions and badge

* Move readme

* Update README.md

* Update README.md

* Cog 813 source code chunks (#383)

* fix: pass the list of all CodeFiles to enrichment task

* feat: introduce SourceCodeChunk, update metadata

* feat: get_source_code_chunks code graph pipeline task

* feat: integrate get_source_code_chunks task, comment out summarize_code

* Fix code summarization (#387)

* feat: update data models

* feat: naive parse long strings in source code

* fix: get_non_py_files instead of get_non_code_files

* fix: limit recursion, add comment

* handle embedding empty input error (#398)

* feat: robustly handle CodeFile source code

* refactor: sort imports

* todo: add support for other embedding models

* feat: add custom logger

* feat: add robustness to get_source_code_chunks

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

* feat: improve embedding exceptions

* refactor: format indents, rename module

---------

Co-authored-by: alekszievr <44192193+alekszievr@users.noreply.github.com>
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

* Fix diagram

* Fix instructions

* adding and fixing files

* Update README.md

* ruff format

* Fix linter issues

* Implement PR review

* Comment out profiling

* fix: add allowed extensions

* fix: adhere UnstructuredDocument.read() to Document

* feat: time code graph run and add mock support

* Fix ollama, work on visualization

* fix: Fixes faulty logging format and sets up error logging in dynamic steps example

* Overcome ContextWindowExceededError by checking token count while chunking (#413)

* fix: Fixes duplicated edges in cognify by limiting the recursion depth in add datapoints

* Adjust AudioDocument and handle None token limit

* Handle azure models as well

* Add clean logging to code graph example

* Remove setting envvars from arg

* fix: fixes create_cognee_style_network_with_logo unit test

* fix: removes accidental remained print

* Get embedding engine instead of passing it. Get it from vector engine instead of direct getter.

* Fix visualization

* Get embedding engine instead of passing it in code chunking.

* Fix poetry issues

* chore: Update version of poetry install action

* chore: Update action to trigger on pull request for any branch

* chore: Remove if in github action to allow triggering on push

* chore: Remove if condition to allow gh actions to trigger on push to PR

* chore: Update poetry version in github actions

* chore: Set fixed ubuntu version to 22.04

* chore: Update py lint to use ubuntu 22.04

* chore: update ubuntu version to 22.04

* feat: implements the first version of graph based completion in search

* chore: Update python 3.9 gh action to use 3.12 instead

* chore: Update formatting of utils.py

* Fix poetry issues

* Adjust integration tests

* fix: Fixes ruff formatting

* Handle circular import

* fix: Resolve profiler issue with partial and recursive logger imports

Resolve issue for profiler with partial and recursive logger imports

* fix: Remove logger from __init__.py file

* test: Test profiling on HEAD branch

* test: Return profiler to base branch

* Set max_tokens in config

* Adjust SWE-bench script to code graph pipeline call

* Adjust SWE-bench script to code graph pipeline call

* fix: Add fix for accessing dictionary elements that don't exits

Using get for the text key instead of direct access to handle situation if the text key doesn't exist

* feat: Add ability to change graph database configuration through cognee

* feat: adds pydantic types to graph layer models

* feat: adds basic retriever for swe bench

* Match Ruff version in config to the one in github actions

* feat: implements code retreiver

* Fix: fixes unit test for codepart search

* Format with Ruff 0.9.0

* Fix: deleting incorrect repo path

* fix: resolve issue with langfuse dependency installation when integrating cognee in different packages

* version: Increase version to 0.1.21

---------

Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Rita Aleksziev <alekszievr@gmail.com>
Co-authored-by: vasilije <vas.markovic@gmail.com>
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
Co-authored-by: lxobr <122801072+lxobr@users.noreply.github.com>
Co-authored-by: alekszievr <44192193+alekszievr@users.noreply.github.com>
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Henry Mao <1828968+calclavia@users.noreply.github.com>
2025-01-10 19:37:50 +01:00

3.5 KiB

🚀 How to Contribute to cognee

Thank you for investing time in contributing to our project! Here's a guide to get you started.

1. 🚀 Getting Started

🍴 Fork the Repository

To start your journey, you'll need your very own copy of cognee. Think of it as your own innovation lab. 🧪

  1. Navigate to the cognee repository on GitHub.
  2. In the upper-right corner, click the 'Fork' button.

🚀 Clone the Repository

Next, let's bring your newly forked repository to your local machine.

git clone https://github.com/<your-github-username>/cognee.git

2. 🛠️ Making Changes

🌟 Create a Branch

Get ready to channel your creativity. Begin by creating a new branch for your incredible features. 🧞‍♂️

git checkout -b feature/your-feature-name

✏️ Make Your Changes

Now's your chance to shine! Dive in and make your contributions. 🌠

3. 🚀 Submitting Changes

After making your changes, follow these steps:

Run the Tests

Ensure your changes do not break the existing codebase:

python cognee/cognee/tests/test_library.py

🚢 Push Your Feature Branch

# Add your changes to the staging area:
git add .

# Commit changes with an adequate description:
git commit -m "Describe your changes here"

# Push your feature branch to your forked repository:
git push origin feature/your-feature-name

🚀 Create a Pull Request

You're on the verge of completion! It's time to showcase your hard work. 🌐

  1. Go to cognee on GitHub.
  2. Hit the "Compare & Pull Request" button.
  3. Select the base branch (main) and the compare branch (the one with your features).
  4. Craft a compelling title and provide a detailed description of your contributions. 🎩

4. 🔍 Review and Approval

The project maintainers will review your work, possibly suggest improvements, or request further details. Once you receive approval, your contributions will become part of cognee!

5. Developer Certificate of Origin

All contributions to the topoteretes codebase must be signed-off to indicate you have read and agreed to the Developer Certificate of Origin (DCO), which is in the root directory under name DCO. To sign the DCO, simply add -s after all commits that you make, to do this easily you can make a git alias from the command line, for example:

$ git config alias.cos "commit -s"

Will allow you to write git cos which will automatically sign-off your commit. By signing a commit you are agreeing to the DCO and agree that you will be banned from the topoteretes GitHub organisation and Discord server if you violate the DCO.

We consider the following as violations to the DCO:

Signing the DCO with a fake name or pseudonym, if you are registered on GitHub or another platform with a fake name then you will not be able to contribute to topoteretes before updating your name; Submitting a contribution that you did not have the right to submit whether due to licensing, copyright, or any other restrictions.

6. 📜 Code of Conduct

Ensure you adhere to the project's Code of Conduct throughout your participation.

7. 📫 Contact

If you need assistance or simply wish to connect, we're here for you. Contact us by filing an issue on the GitHub repository or by messaging us on our Discord server.

Thanks for helping to evolve cognee!