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## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
---------
Signed-off-by: Diego B Theuerkauf <diego.theuerkauf@tuebingen.mpg.de>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
Co-authored-by: Boris <boris@topoteretes.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Hande <159312713+hande-k@users.noreply.github.com>
Co-authored-by: Matea Pesic <80577904+matea16@users.noreply.github.com>
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Daniel Molnar <soobrosa@gmail.com>
Co-authored-by: Diego Baptista Theuerkauf <34717973+diegoabt@users.noreply.github.com>
Co-authored-by: Dmitrii Galkin <36552323+dm1tryG@users.noreply.github.com>
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
Co-authored-by: lxobr <122801072+lxobr@users.noreply.github.com>
Co-authored-by: github-actions[bot] <github-actions@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
---------
Co-authored-by: vasilije <vas.markovic@gmail.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Hande <159312713+hande-k@users.noreply.github.com>
Co-authored-by: Matea Pesic <80577904+matea16@users.noreply.github.com>
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Daniel Molnar <soobrosa@gmail.com>
Co-authored-by: Diego Baptista Theuerkauf <34717973+diegoabt@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
- db_engine was not dynamically gathered, with this a change in system
directory will be handled correctly
- Added top_k to all search types
- Reduced delete test threshold
- Updated MCP version and info
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
---------
Co-authored-by: Boris <boris@topoteretes.com>
<!-- .github/pull_request_template.md -->
## Description
Remove outdated nodejs example, add specific versioning for mcp
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
<!-- .github/pull_request_template.md -->
## Description
- Fixes MCP server communication issue by switching to sys.stderr ( as
is default for python loggin )
- Adds needed api optional dependency for fastapi users
- Removes lock file as a new one will need to be made after new Cognee
release with api optional dependency
- Adds log file location to MCP tool call answer
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- .github/pull_request_template.md -->
## Description
Missing dependency.
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Enabled PostgreSQL integration, expanding support for additional
database options and enhancing overall functionality.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **Chores**
- Enhanced deployment and build processes to improve system reliability
and simplify dependency management.
- **New Features**
- Added a new dependency (`uv>=0.6.3`) to support enhanced
functionality.
- Updated extra dependencies for `codegraph` to include the
`transformers` library.
- Improved logging on server startup for clearer operational feedback.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
Add gemini ollama support for cognee mcp
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Expanded the system’s capabilities by updating its underlying
integrations, providing enhanced functionality and performance
improvements for end-users.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Introduced an automated deployment workflow to build and push
container images.
- Updated dependency management to include additional database support.
- **Refactor**
- Enhanced asynchronous operations and logging in the server for
improved performance.
- Optimized extraction and retrieval processes for code-related data.
- **Chores**
- Streamlined build configurations and startup scripts for greater
reliability.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Enhanced code search and dependency analysis for improved accuracy.
- Introduced a new high-performance text embedding option.
- Added an additional execution entry point for code graph processing.
- New optional parameters for flexible property selection in retrieval
functions.
- Introduced new classes for handling import statements, function
definitions, and class definitions.
- Updated embedding engine selection based on configuration options.
- **Bug Fixes**
- Improved error handling in search operations and database queries for
a more stable user experience.
- Enhanced error logging for source code parsing.
- **Refactor**
- Streamlined asynchronous processing and refactored internal dependency
extraction.
- Updated configuration and integration settings to enhance overall
reliability.
- Restructured functions for simplified dependency handling.
- **Chores**
- Upgraded and reorganized dependency management with optional libraries
for extended functionality.
- Added new secret parameters for embedding configuration in workflow
settings.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: vasilije <vas.markovic@gmail.com>
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **Dependency Update**
- Downgraded `mcp` package version from 1.2.0 to 1.1.3
- Updated `cognee` dependency to include additional features with
`cognee[codegraph]`
- **New Features**
- Introduced a new tool, "codify", for transforming codebases into
knowledge graphs
- Enhanced the existing "search" tool to accept a new parameter for
search type
- **Improvements**
- Streamlined search functionality with a new modular approach
- Added new asynchronous function for retrieving and formatting code
parts
- **Documentation**
- Updated import paths for `SearchType` in various modules and tests to
reflect structural changes
- **Code Cleanup**
- Removed legacy search module and associated classes/functions
- Refined data transfer object classes for consistency and clarity
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
