<!-- .github/pull_request_template.md -->
## Description
Resolve Gemini Adapter issues:
1. resolve embedding batch issue,
2. Resolve slowness because gemini tokenizer was sending word per word
to Googles API to count tokens (using OpenAI's local tokenizer to count
tokens for Gemini now)
3. Update deprecated library and move to instructor
## Type of Change
<!-- Please check the relevant option -->
- [x] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):
## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [ ] **I have tested my changes thoroughly before submitting this PR**
- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
- [ ] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
<!-- .github/pull_request_template.md -->
## Description
Fix Cognee mcp issues
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
---------
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
---------
Co-authored-by: vasilije <vas.markovic@gmail.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
---------
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
<!-- .github/pull_request_template.md -->
## Description
Added tools to check current cognify and codify status
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
<!-- .github/pull_request_template.md -->
## Description
Add both sse and stdio support for Cognee MCP
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
<!-- .github/pull_request_template.md -->
## Description
- db_engine was not dynamically gathered, with this a change in system
directory will be handled correctly
- Added top_k to all search types
- Reduced delete test threshold
- Updated MCP version and info
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
---------
Co-authored-by: Boris <boris@topoteretes.com>
<!-- .github/pull_request_template.md -->
## Description
Remove outdated nodejs example, add specific versioning for mcp
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
<!-- .github/pull_request_template.md -->
## Description
- Fixes MCP server communication issue by switching to sys.stderr ( as
is default for python loggin )
- Adds needed api optional dependency for fastapi users
- Removes lock file as a new one will need to be made after new Cognee
release with api optional dependency
- Adds log file location to MCP tool call answer
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- .github/pull_request_template.md -->
## Description
Missing dependency.
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Enabled PostgreSQL integration, expanding support for additional
database options and enhancing overall functionality.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **Chores**
- Enhanced deployment and build processes to improve system reliability
and simplify dependency management.
- **New Features**
- Added a new dependency (`uv>=0.6.3`) to support enhanced
functionality.
- Updated extra dependencies for `codegraph` to include the
`transformers` library.
- Improved logging on server startup for clearer operational feedback.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
Add gemini ollama support for cognee mcp
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Expanded the system’s capabilities by updating its underlying
integrations, providing enhanced functionality and performance
improvements for end-users.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Introduced an automated deployment workflow to build and push
container images.
- Updated dependency management to include additional database support.
- **Refactor**
- Enhanced asynchronous operations and logging in the server for
improved performance.
- Optimized extraction and retrieval processes for code-related data.
- **Chores**
- Streamlined build configurations and startup scripts for greater
reliability.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Enhanced code search and dependency analysis for improved accuracy.
- Introduced a new high-performance text embedding option.
- Added an additional execution entry point for code graph processing.
- New optional parameters for flexible property selection in retrieval
functions.
- Introduced new classes for handling import statements, function
definitions, and class definitions.
- Updated embedding engine selection based on configuration options.
- **Bug Fixes**
- Improved error handling in search operations and database queries for
a more stable user experience.
- Enhanced error logging for source code parsing.
- **Refactor**
- Streamlined asynchronous processing and refactored internal dependency
extraction.
- Updated configuration and integration settings to enhance overall
reliability.
- Restructured functions for simplified dependency handling.
- **Chores**
- Upgraded and reorganized dependency management with optional libraries
for extended functionality.
- Added new secret parameters for embedding configuration in workflow
settings.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: vasilije <vas.markovic@gmail.com>
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **Dependency Update**
- Downgraded `mcp` package version from 1.2.0 to 1.1.3
- Updated `cognee` dependency to include additional features with
`cognee[codegraph]`
- **New Features**
- Introduced a new tool, "codify", for transforming codebases into
knowledge graphs
- Enhanced the existing "search" tool to accept a new parameter for
search type
- **Improvements**
- Streamlined search functionality with a new modular approach
- Added new asynchronous function for retrieving and formatting code
parts
- **Documentation**
- Updated import paths for `SearchType` in various modules and tests to
reflect structural changes
- **Code Cleanup**
- Removed legacy search module and associated classes/functions
- Refined data transfer object classes for consistency and clarity
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
