From c8ff5be8cec02389acc95b9a8530f5c78067ca34 Mon Sep 17 00:00:00 2001
From: Preston Rasmussen <109292228+prasmussen15@users.noreply.github.com>
Date: Thu, 3 Oct 2024 15:39:35 -0400
Subject: [PATCH] Msc benchmark update (#173)
* eval update
* I sped it up
* make format
* search updates
* updates
* cleanup
* make format
* remove unused imports
* poetry lock
---
.../msc_eval.py | 21 +-
.../msc_runner.py | 5 +-
graphiti_core/edges.py | 6 +-
graphiti_core/graphiti.py | 19 +-
graphiti_core/nodes.py | 6 +-
graphiti_core/prompts/eval.py | 30 +-
graphiti_core/prompts/extract_edges.py | 5 +-
graphiti_core/search/search.py | 75 +-
graphiti_core/search/search_config.py | 6 +-
graphiti_core/search/search_utils.py | 33 +-
poetry.lock | 935 ++++++++++++++----
pyproject.toml | 1 +
12 files changed, 878 insertions(+), 264 deletions(-)
diff --git a/examples/multi_session_conversation_memory/msc_eval.py b/examples/multi_session_conversation_memory/msc_eval.py
index 0042deee..7c2ac0b7 100644
--- a/examples/multi_session_conversation_memory/msc_eval.py
+++ b/examples/multi_session_conversation_memory/msc_eval.py
@@ -58,13 +58,21 @@ def setup_logging():
async def evaluate_qa(graphiti: Graphiti, group_id: str, query: str, answer: str):
search_start = time()
- results = await graphiti._search(query, COMBINED_HYBRID_SEARCH_RRF, group_ids=[str(group_id)])
+ results = await graphiti._search(
+ query,
+ COMBINED_HYBRID_SEARCH_RRF,
+ group_ids=[str(group_id)],
+ )
search_end = time()
search_duration = search_end - search_start
facts = [edge.fact for edge in results.edges]
entity_summaries = [node.name + ': ' + node.summary for node in results.nodes]
- context = {'facts': facts, 'entity_summaries': entity_summaries, 'query': 'Bob: ' + query}
+ context = {
+ 'facts': facts,
+ 'entity_summaries': entity_summaries,
+ 'query': 'Bob: ' + query,
+ }
llm_response = await graphiti.llm_client.generate_response(
prompt_library.eval.qa_prompt(context)
@@ -96,7 +104,14 @@ async def main():
setup_logging()
graphiti = Graphiti(neo4j_uri, neo4j_user, neo4j_password)
- fields = ['Group id', 'Question', 'Answer', 'Response', 'Score', 'Search Duration (ms)']
+ fields = [
+ 'Group id',
+ 'Question',
+ 'Answer',
+ 'Response',
+ 'Score',
+ 'Search Duration (ms)',
+ ]
with open('../data/msc_eval.csv', 'w', newline='') as file:
writer = csv.DictWriter(file, fieldnames=fields)
writer.writeheader()
diff --git a/examples/multi_session_conversation_memory/msc_runner.py b/examples/multi_session_conversation_memory/msc_runner.py
index 3ea412ae..81f82b06 100644
--- a/examples/multi_session_conversation_memory/msc_runner.py
+++ b/examples/multi_session_conversation_memory/msc_runner.py
@@ -71,7 +71,7 @@ async def main():
graphiti = Graphiti(neo4j_uri, neo4j_user, neo4j_password)
msc_messages = parse_msc_messages()
i = 0
- while i <= 490:
+ while i < len(msc_messages):
msc_message_slice = msc_messages[i : i + 10]
group_ids = range(len(msc_messages))[i : i + 10]
@@ -84,8 +84,5 @@ async def main():
i += 10
- # build communities
- # await client.build_communities()
-
asyncio.run(main())
diff --git a/graphiti_core/edges.py b/graphiti_core/edges.py
index b5903f31..c6a070ed 100644
--- a/graphiti_core/edges.py
+++ b/graphiti_core/edges.py
@@ -188,9 +188,9 @@ class EntityEdge(Edge):
MATCH (source:Entity {uuid: $source_uuid})
MATCH (target:Entity {uuid: $target_uuid})
MERGE (source)-[r:RELATES_TO {uuid: $uuid}]->(target)
- SET r = {uuid: $uuid, name: $name, group_id: $group_id, fact: $fact, fact_embedding: $fact_embedding,
- episodes: $episodes, created_at: $created_at, expired_at: $expired_at,
- valid_at: $valid_at, invalid_at: $invalid_at}
+ SET r = {uuid: $uuid, name: $name, group_id: $group_id, fact: $fact, episodes: $episodes,
+ created_at: $created_at, expired_at: $expired_at, valid_at: $valid_at, invalid_at: $invalid_at}
+ WITH r CALL db.create.setRelationshipVectorProperty(r, "fact_embedding", $fact_embedding)
RETURN r.uuid AS uuid""",
source_uuid=self.source_node_uuid,
target_uuid=self.target_node_uuid,
diff --git a/graphiti_core/graphiti.py b/graphiti_core/graphiti.py
index 5d0c6ba4..fff2aa91 100644
--- a/graphiti_core/graphiti.py
+++ b/graphiti_core/graphiti.py
@@ -700,18 +700,17 @@ class Graphiti:
).nodes
return nodes
+ async def get_episode_mentions(self, episode_uuids: list[str]) -> SearchResults:
+ episodes = await EpisodicNode.get_by_uuids(self.driver, episode_uuids)
-async def get_episode_mentions(self, episode_uuids: list[str]) -> SearchResults:
- episodes = await EpisodicNode.get_by_uuids(self.driver, episode_uuids)
+ edges_list = await asyncio.gather(
+ *[EntityEdge.get_by_uuids(self.driver, episode.entity_edges) for episode in episodes]
+ )
- edges_list = await asyncio.gather(
- *[EntityEdge.get_by_uuids(self.driver, episode.entity_edges) for episode in episodes]
- )
+ edges: list[EntityEdge] = [edge for lst in edges_list for edge in lst]
- edges: list[EntityEdge] = [edge for lst in edges_list for edge in lst]
+ nodes = await get_mentioned_nodes(self.driver, episodes)
- nodes = await get_mentioned_nodes(self.driver, episodes)
+ communities = await get_communities_by_nodes(self.driver, nodes)
- communities = await get_communities_by_nodes(self.driver, nodes)
-
- return SearchResults(edges=edges, nodes=nodes, communities=communities)
+ return SearchResults(edges=edges, nodes=nodes, communities=communities)
diff --git a/graphiti_core/nodes.py b/graphiti_core/nodes.py
index 2635ae89..fc6b3583 100644
--- a/graphiti_core/nodes.py
+++ b/graphiti_core/nodes.py
@@ -225,7 +225,8 @@ class EntityNode(Node):
result = await driver.execute_query(
"""
MERGE (n:Entity {uuid: $uuid})
- SET n = {uuid: $uuid, name: $name, name_embedding: $name_embedding, group_id: $group_id, summary: $summary, created_at: $created_at}
+ SET n = {uuid: $uuid, name: $name, group_id: $group_id, summary: $summary, created_at: $created_at}
+ WITH n CALL db.create.setNodeVectorProperty(n, "name_embedding", $name_embedding)
RETURN n.uuid AS uuid""",
uuid=self.uuid,
name=self.name,
@@ -308,7 +309,8 @@ class CommunityNode(Node):
result = await driver.execute_query(
"""
MERGE (n:Community {uuid: $uuid})
- SET n = {uuid: $uuid, name: $name, name_embedding: $name_embedding, group_id: $group_id, summary: $summary, created_at: $created_at}
+ SET n = {uuid: $uuid, name: $name, group_id: $group_id, summary: $summary, created_at: $created_at}
+ WITH n CALL db.create.setNodeVectorProperty(n, "name_embedding", $name_embedding)
RETURN n.uuid AS uuid""",
uuid=self.uuid,
name=self.name,
diff --git a/graphiti_core/prompts/eval.py b/graphiti_core/prompts/eval.py
index 8fa22d3f..258b868b 100644
--- a/graphiti_core/prompts/eval.py
+++ b/graphiti_core/prompts/eval.py
@@ -23,11 +23,33 @@ from .models import Message, PromptFunction, PromptVersion
class Prompt(Protocol):
qa_prompt: PromptVersion
eval_prompt: PromptVersion
+ query_expansion: PromptVersion
class Versions(TypedDict):
qa_prompt: PromptFunction
eval_prompt: PromptFunction
+ query_expansion: PromptFunction
+
+
+def query_expansion(context: dict[str, Any]) -> list[Message]:
+ sys_prompt = """You are an expert at rephrasing questions into queries used in a database retrieval system"""
+
+ user_prompt = f"""
+ Bob is asking Alice a question, are you able to rephrase the question into a simpler one about Alice in the third person
+ that maintains the relevant context?
+
+ {json.dumps(context['query'])}
+
+ respond with a JSON object in the following format:
+ {{
+ "query": "query optimized for database search"
+ }}
+ """
+ return [
+ Message(role='system', content=sys_prompt),
+ Message(role='user', content=user_prompt),
+ ]
def qa_prompt(context: dict[str, Any]) -> list[Message]:
@@ -38,7 +60,7 @@ def qa_prompt(context: dict[str, Any]) -> list[Message]:
You are given the following entity summaries and facts to help you determine the answer to your question.
{json.dumps(context['entity_summaries'])}
-
{json.dumps(context['facts'])}
@@ -87,4 +109,8 @@ def eval_prompt(context: dict[str, Any]) -> list[Message]:
]
-versions: Versions = {'qa_prompt': qa_prompt, 'eval_prompt': eval_prompt}
+versions: Versions = {
+ 'qa_prompt': qa_prompt,
+ 'eval_prompt': eval_prompt,
+ 'query_expansion': query_expansion,
+}
diff --git a/graphiti_core/prompts/extract_edges.py b/graphiti_core/prompts/extract_edges.py
index cef5e38f..9d39c116 100644
--- a/graphiti_core/prompts/extract_edges.py
+++ b/graphiti_core/prompts/extract_edges.py
@@ -113,8 +113,9 @@ def v2(context: dict[str, Any]) -> list[Message]:
2. Each edge should represent a clear relationship between two DISTINCT nodes.
3. The relation_type should be a concise, all-caps description of the relationship (e.g., LOVES, IS_FRIENDS_WITH, WORKS_FOR).
4. Provide a more detailed fact describing the relationship.
- 5. Consider temporal aspects of relationships when relevant.
- 6. Avoid using the same node as the source and target of a relationship
+ 5. The fact should include any specific relevant information, including numeric information
+ 6. Consider temporal aspects of relationships when relevant.
+ 7. Avoid using the same node as the source and target of a relationship
Respond with a JSON object in the following format:
{{
diff --git a/graphiti_core/search/search.py b/graphiti_core/search/search.py
index daf80f3e..4d4f34de 100644
--- a/graphiti_core/search/search.py
+++ b/graphiti_core/search/search.py
@@ -29,13 +29,10 @@ from graphiti_core.search.search_config import (
DEFAULT_SEARCH_LIMIT,
CommunityReranker,
CommunitySearchConfig,
- CommunitySearchMethod,
EdgeReranker,
EdgeSearchConfig,
- EdgeSearchMethod,
NodeReranker,
NodeSearchConfig,
- NodeSearchMethod,
SearchConfig,
SearchResults,
)
@@ -120,22 +117,16 @@ async def edge_search(
if config is None:
return []
- search_results: list[list[EntityEdge]] = []
-
- if EdgeSearchMethod.bm25 in config.search_methods:
- text_search = await edge_fulltext_search(driver, query, None, None, group_ids, 2 * limit)
- search_results.append(text_search)
-
- if EdgeSearchMethod.cosine_similarity in config.search_methods:
- search_vector = await embedder.create(input=[query])
-
- similarity_search = await edge_similarity_search(
- driver, search_vector, None, None, group_ids, 2 * limit
+ search_results: list[list[EntityEdge]] = list(
+ await asyncio.gather(
+ *[
+ edge_fulltext_search(driver, query, None, None, group_ids, 2 * limit),
+ edge_similarity_search(
+ driver, await embedder.create(input=[query]), None, None, group_ids, 2 * limit
+ ),
+ ]
)
- search_results.append(similarity_search)
-
- if len(search_results) > 1 and config.reranker is None:
- raise SearchRerankerError('Multiple edge searches enabled without a reranker')
+ )
edge_uuid_map = {edge.uuid: edge for result in search_results for edge in result}
@@ -184,22 +175,16 @@ async def node_search(
if config is None:
return []
- search_results: list[list[EntityNode]] = []
-
- if NodeSearchMethod.bm25 in config.search_methods:
- text_search = await node_fulltext_search(driver, query, group_ids, 2 * limit)
- search_results.append(text_search)
-
- if NodeSearchMethod.cosine_similarity in config.search_methods:
- search_vector = await embedder.create(input=[query])
-
- similarity_search = await node_similarity_search(
- driver, search_vector, group_ids, 2 * limit
+ search_results: list[list[EntityNode]] = list(
+ await asyncio.gather(
+ *[
+ node_fulltext_search(driver, query, group_ids, 2 * limit),
+ node_similarity_search(
+ driver, await embedder.create(input=[query]), group_ids, 2 * limit
+ ),
+ ]
)
- search_results.append(similarity_search)
-
- if len(search_results) > 1 and config.reranker is None:
- raise SearchRerankerError('Multiple node searches enabled without a reranker')
+ )
search_result_uuids = [[node.uuid for node in result] for result in search_results]
node_uuid_map = {node.uuid: node for result in search_results for node in result}
@@ -232,22 +217,16 @@ async def community_search(
if config is None:
return []
- search_results: list[list[CommunityNode]] = []
-
- if CommunitySearchMethod.bm25 in config.search_methods:
- text_search = await community_fulltext_search(driver, query, group_ids, 2 * limit)
- search_results.append(text_search)
-
- if CommunitySearchMethod.cosine_similarity in config.search_methods:
- search_vector = await embedder.create(input=[query])
-
- similarity_search = await community_similarity_search(
- driver, search_vector, group_ids, 2 * limit
+ search_results: list[list[CommunityNode]] = list(
+ await asyncio.gather(
+ *[
+ community_fulltext_search(driver, query, group_ids, 2 * limit),
+ community_similarity_search(
+ driver, await embedder.create(input=[query]), group_ids, 2 * limit
+ ),
+ ]
)
- search_results.append(similarity_search)
-
- if len(search_results) > 1 and config.reranker is None:
- raise SearchRerankerError('Multiple node searches enabled without a reranker')
+ )
search_result_uuids = [[community.uuid for community in result] for result in search_results]
community_uuid_map = {
diff --git a/graphiti_core/search/search_config.py b/graphiti_core/search/search_config.py
index ceb644b9..21acca51 100644
--- a/graphiti_core/search/search_config.py
+++ b/graphiti_core/search/search_config.py
@@ -57,17 +57,17 @@ class CommunityReranker(Enum):
class EdgeSearchConfig(BaseModel):
search_methods: list[EdgeSearchMethod]
- reranker: EdgeReranker | None
+ reranker: EdgeReranker = Field(default=EdgeReranker.rrf)
class NodeSearchConfig(BaseModel):
search_methods: list[NodeSearchMethod]
- reranker: NodeReranker | None
+ reranker: NodeReranker = Field(default=NodeReranker.rrf)
class CommunitySearchConfig(BaseModel):
search_methods: list[CommunitySearchMethod]
- reranker: CommunityReranker | None
+ reranker: CommunityReranker = Field(default=CommunityReranker.rrf)
class SearchConfig(BaseModel):
diff --git a/graphiti_core/search/search_utils.py b/graphiti_core/search/search_utils.py
index af672bfd..9af18d81 100644
--- a/graphiti_core/search/search_utils.py
+++ b/graphiti_core/search/search_utils.py
@@ -52,6 +52,21 @@ def fulltext_query(query: str, group_ids: list[str] | None = None):
return full_query
+async def get_episodes_by_mentions(
+ driver: AsyncDriver,
+ nodes: list[EntityNode],
+ edges: list[EntityEdge],
+ limit: int = RELEVANT_SCHEMA_LIMIT,
+) -> list[EpisodicNode]:
+ episode_uuids: list[str] = []
+ for edge in edges:
+ episode_uuids.extend(edge.episodes)
+
+ episodes = await EpisodicNode.get_by_uuids(driver, episode_uuids[:limit])
+
+ return episodes
+
+
async def get_mentioned_nodes(
driver: AsyncDriver, episodes: list[EpisodicNode]
) -> list[EntityNode]:
@@ -113,9 +128,6 @@ async def edge_fulltext_search(
CALL db.index.fulltext.queryRelationships("edge_name_and_fact", $query)
YIELD relationship AS rel, score
MATCH (n:Entity)-[r {uuid: rel.uuid}]-(m:Entity)
- WHERE ($source_uuid IS NULL OR n.uuid = $source_uuid)
- AND ($target_uuid IS NULL OR m.uuid = $target_uuid)
- AND ($group_ids IS NULL OR n.group_id IN $group_ids)
RETURN
r.uuid AS uuid,
r.group_id AS group_id,
@@ -156,12 +168,14 @@ async def edge_similarity_search(
) -> list[EntityEdge]:
# vector similarity search over embedded facts
query = Query("""
+ CYPHER runtime = parallel parallelRuntimeSupport=all
MATCH (n:Entity)-[r:RELATES_TO]-(m:Entity)
WHERE ($group_ids IS NULL OR r.group_id IN $group_ids)
AND ($source_uuid IS NULL OR n.uuid = $source_uuid)
AND ($target_uuid IS NULL OR m.uuid = $target_uuid)
+ WITH n, r, m, vector.similarity.cosine(r.fact_embedding, $search_vector) AS score
+ WHERE score > 0.6
RETURN
- vector.similarity.cosine(r.fact_embedding, $search_vector) AS score,
r.uuid AS uuid,
r.group_id AS group_id,
n.uuid AS source_node_uuid,
@@ -205,7 +219,6 @@ async def node_fulltext_search(
"""
CALL db.index.fulltext.queryNodes("node_name_and_summary", $query)
YIELD node AS n, score
- WHERE $group_ids IS NULL OR n.group_id IN $group_ids
RETURN
n.uuid AS uuid,
n.group_id AS group_id,
@@ -234,10 +247,12 @@ async def node_similarity_search(
# vector similarity search over entity names
records, _, _ = await driver.execute_query(
"""
+ CYPHER runtime = parallel parallelRuntimeSupport=all
MATCH (n:Entity)
WHERE $group_ids IS NULL OR n.group_id IN $group_ids
+ WITH n, vector.similarity.cosine(n.name_embedding, $search_vector) AS score
+ WHERE score > 0.6
RETURN
- vector.similarity.cosine(n.name_embedding, $search_vector) AS score,
n.uuid As uuid,
n.group_id AS group_id,
n.name AS name,
@@ -269,8 +284,6 @@ async def community_fulltext_search(
"""
CALL db.index.fulltext.queryNodes("community_name", $query)
YIELD node AS comm, score
- MATCH (comm:Community)
- WHERE $group_ids IS NULL OR comm.group_id in $group_ids
RETURN
comm.uuid AS uuid,
comm.group_id AS group_id,
@@ -299,10 +312,12 @@ async def community_similarity_search(
# vector similarity search over entity names
records, _, _ = await driver.execute_query(
"""
+ CYPHER runtime = parallel parallelRuntimeSupport=all
MATCH (comm:Community)
WHERE ($group_ids IS NULL OR comm.group_id IN $group_ids)
+ WITH comm, vector.similarity.cosine(comm.name_embedding, $search_vector) AS score
+ WHERE score > 0.6
RETURN
- vector.similarity.cosine(comm.name_embedding, $search_vector) AS score,
comm.uuid As uuid,
comm.group_id AS group_id,
comm.name AS name,
diff --git a/poetry.lock b/poetry.lock
index 47b6a718..8af544f5 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,5 +1,153 @@
# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
+[[package]]
+name = "aiohappyeyeballs"
+version = "2.4.3"
+description = "Happy Eyeballs for asyncio"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "aiohappyeyeballs-2.4.3-py3-none-any.whl", hash = "sha256:8a7a83727b2756f394ab2895ea0765a0a8c475e3c71e98d43d76f22b4b435572"},
+ {file = "aiohappyeyeballs-2.4.3.tar.gz", hash = "sha256:75cf88a15106a5002a8eb1dab212525c00d1f4c0fa96e551c9fbe6f09a621586"},
+]
+
+[[package]]
+name = "aiohttp"
+version = "3.10.8"
+description = "Async http client/server framework (asyncio)"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "aiohttp-3.10.8-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a1ba7bc139592339ddeb62c06486d0fa0f4ca61216e14137a40d626c81faf10c"},
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+ {file = "aiohttp-3.10.8-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:69de056022e7abf69cb9fec795515973cc3eeaff51e3ea8d72a77aa933a91c52"},
+ {file = "aiohttp-3.10.8-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:ee3587506898d4a404b33bd19689286ccf226c3d44d7a73670c8498cd688e42c"},
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[[package]]
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description = "High level compatibility layer for multiple asynchronous event loop implementations"
optional = false
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socks = ["PySocks (>=1.5.6,!=1.5.7)"]
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+]
+
+[package.dependencies]
+idna = ">=2.0"
+multidict = ">=4.0"
+
[metadata]
lock-version = "2.0"
python-versions = "^3.10"
-content-hash = "8a350d5a41172bbe8b2902277135d6545b43d2b96a33040e6be78c68c1cf909e"
+content-hash = "daa365b37d4a128fad563f7558dad799f5d7d1e466de11e0ba48e60e3ac4ceaf"
diff --git a/pyproject.toml b/pyproject.toml
index c7b7afd0..72240e99 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -20,6 +20,7 @@ diskcache = "^5.6.3"
openai = "^1.50.2"
tenacity = "<9.0.0"
numpy = ">=1.0.0"
+voyageai = "^0.2.3"
[tool.poetry.dev-dependencies]
pytest = "^8.3.3"