cognee/level_2/vectordb/vectordb.py
2023-10-05 09:31:25 +02:00

308 lines
12 KiB
Python

# Make sure to install the following packages: dlt, langchain, duckdb, python-dotenv, openai, weaviate-client
import logging
from io import BytesIO
import sys
import os
from marshmallow import Schema, fields
from level_2.loaders.loaders import _document_loader
# Add the parent directory to sys.path
sys.path.append(os.path.dirname(os.path.abspath(__file__)))
logging.basicConfig(level=logging.INFO)
import marvin
import requests
from langchain.document_loaders import PyPDFLoader
from langchain.retrievers import WeaviateHybridSearchRetriever
from weaviate.gql.get import HybridFusion
import tracemalloc
tracemalloc.start()
import os
from datetime import datetime
from langchain.embeddings.openai import OpenAIEmbeddings
from dotenv import load_dotenv
from level_2.schema.semantic.semantic_schema import DocumentSchema, SCHEMA_VERSIONS, DocumentMetadataSchemaV1
from langchain.schema import Document
import weaviate
load_dotenv()
LTM_MEMORY_ID_DEFAULT = "00000"
ST_MEMORY_ID_DEFAULT = "0000"
BUFFER_ID_DEFAULT = "0000"
class VectorDB:
OPENAI_API_KEY = os.getenv("OPENAI_API_KEY", "")
def __init__(
self,
user_id: str,
index_name: str,
memory_id: str,
ltm_memory_id: str = LTM_MEMORY_ID_DEFAULT,
st_memory_id: str = ST_MEMORY_ID_DEFAULT,
buffer_id: str = BUFFER_ID_DEFAULT,
namespace: str = None,
):
self.user_id = user_id
self.index_name = index_name
self.namespace = namespace
self.memory_id = memory_id
self.ltm_memory_id = ltm_memory_id
self.st_memory_id = st_memory_id
self.buffer_id = buffer_id
class PineconeVectorDB(VectorDB):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.init_pinecone(self.index_name)
def init_pinecone(self, index_name):
# Pinecone initialization logic
pass
class WeaviateVectorDB(VectorDB):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.init_weaviate(self.namespace)
def init_weaviate(self, namespace: str):
# Weaviate initialization logic
embeddings = OpenAIEmbeddings()
auth_config = weaviate.auth.AuthApiKey(
api_key=os.environ.get("WEAVIATE_API_KEY")
)
client = weaviate.Client(
url=os.environ.get("WEAVIATE_URL"),
auth_client_secret=auth_config,
additional_headers={"X-OpenAI-Api-Key": os.environ.get("OPENAI_API_KEY")},
)
retriever = WeaviateHybridSearchRetriever(
client=client,
index_name=namespace,
text_key="text",
attributes=[],
embedding=embeddings,
create_schema_if_missing=True,
)
return retriever # If this is part of the initialization, call it here.
def init_weaviate_client(self, namespace: str):
# Weaviate client initialization logic
auth_config = weaviate.auth.AuthApiKey(
api_key=os.environ.get("WEAVIATE_API_KEY")
)
client = weaviate.Client(
url=os.environ.get("WEAVIATE_URL"),
auth_client_secret=auth_config,
additional_headers={"X-OpenAI-Api-Key": os.environ.get("OPENAI_API_KEY")},
)
return client
# def _document_loader(self, observation: str, loader_settings: dict):
# # Check the format of the document
# document_format = loader_settings.get("format", "text")
#
# if document_format == "PDF":
# if loader_settings.get("source") == "url":
# pdf_response = requests.get(loader_settings["path"])
# pdf_stream = BytesIO(pdf_response.content)
# contents = pdf_stream.read()
# tmp_location = os.path.join("/tmp", "tmp.pdf")
# with open(tmp_location, "wb") as tmp_file:
# tmp_file.write(contents)
#
# # Process the PDF using PyPDFLoader
# loader = PyPDFLoader(tmp_location)
# # adapt this for different chunking strategies
# pages = loader.load_and_split()
# return pages
# elif loader_settings.get("source") == "file":
# # Process the PDF using PyPDFLoader
# # might need adapting for different loaders + OCR
# # need to test the path
# loader = PyPDFLoader(loader_settings["path"])
# pages = loader.load_and_split()
# return pages
#
# elif document_format == "text":
# # Process the text directly
# return observation
#
# else:
# raise ValueError(f"Unsupported document format: {document_format}")
def _stuct(self, observation, params, custom_fields=None):
"""Utility function to create the document structure with optional custom fields."""
# Dynamically construct metadata
metadata = {
key: str(getattr(self, key, params.get(key, "")))
for key in [
"user_id", "memory_id", "ltm_memory_id",
"st_memory_id", "buffer_id", "version",
"agreement_id", "privacy_policy", "terms_of_service",
"format", "schema_version", "checksum",
"owner", "license", "validity_start", "validity_end"
]
}
# Merge with custom fields if provided
if custom_fields:
metadata.update(custom_fields)
# Construct document data
document_data = {
"metadata": metadata,
"page_content": observation
}
def get_document_schema_based_on_version(version):
metadata_schema_class = SCHEMA_VERSIONS.get(version, DocumentMetadataSchemaV1)
class DynamicDocumentSchema(Schema):
metadata = fields.Nested(metadata_schema_class, required=True)
page_content = fields.Str(required=True)
return DynamicDocumentSchema
# Validate and deserialize
schema_version = params.get("schema_version", "1.0") # Default to "1.0" if not provided
CurrentDocumentSchema = get_document_schema_based_on_version(schema_version)
loaded_document = CurrentDocumentSchema().load(document_data)
return [loaded_document]
async def add_memories(self, observation, loader_settings=None, params=None, namespace=None, custom_fields=None):
# Update Weaviate memories here
if namespace is None:
namespace = self.namespace
retriever = self.init_weaviate(namespace) # Assuming `init_weaviate` is a method of the class
if loader_settings:
# Assuming _document_loader returns a list of documents
documents = _document_loader(observation, loader_settings)
for doc in documents:
document_to_load = self._stuct(doc.page_content, params, custom_fields)
print("here is the doc to load1", document_to_load)
retriever.add_documents([
Document(metadata=document_to_load[0]['metadata'], page_content=document_to_load[0]['page_content'])])
else:
document_to_load = self._stuct(observation, params, custom_fields)
retriever.add_documents([
Document(metadata=document_to_load[0]['metadata'], page_content=document_to_load[0]['page_content'])])
async def fetch_memories(
self, observation: str, namespace: str, params: dict = None, n_of_observations: int = 2
):
"""
Fetch documents from weaviate.
Parameters:
- observation (str): User query.
- namespace (str): Type of memory accessed.
- params (dict, optional): Filtering parameters.
- n_of_observations (int, optional): For weaviate, equals to autocut. Defaults to 2. Ranges from 1 to 3.
Returns:
List of documents matching the query.
Example:
fetch_memories(query="some query", path=['year'], operator='Equal', valueText='2017*')
"""
client = self.init_weaviate_client(self.namespace)
if not namespace:
namespace = self.namespace
params_user_id = {
"path": ["user_id"],
"operator": "Like",
"valueText": self.user_id,
}
def list_objects_of_class(class_name, schema):
return [
prop["name"]
for class_obj in schema["classes"]
if class_obj["class"] == class_name
for prop in class_obj["properties"]
]
base_query = client.query.get(
namespace, list(list_objects_of_class(namespace, client.schema.get()))
).with_additional(
["id", "creationTimeUnix", "lastUpdateTimeUnix", "score", 'distance']
).with_where(params_user_id).with_limit(10)
if params:
query_output = (
base_query
.with_where(params)
.with_near_text({"concepts": [observation]})
.do()
)
else:
query_output = (
base_query
.with_hybrid(
query=observation,
fusion_type=HybridFusion.RELATIVE_SCORE
)
.with_autocut(n_of_observations)
.do()
)
return query_output
async def delete_memories(self, params: dict = None):
client = self.init_weaviate_client(self.namespace)
if params:
where_filter = {
"path": ["id"],
"operator": "Equal",
"valueText": params.get("id", None),
}
return client.batch.delete_objects(
class_name=self.namespace,
# Same `where` filter as in the GraphQL API
where=where_filter,
)
else:
# Delete all objects
print("HERE IS THE USER ID", self.user_id)
return client.batch.delete_objects(
class_name=self.namespace,
where={
"path": ["user_id"],
"operator": "Equal",
"valueText": self.user_id,
},
)
def update_memories(self, observation, namespace: str, params: dict = None):
client = self.init_weaviate_client(self.namespace)
client.data_object.update(
data_object={
# "text": observation,
"user_id": str(self.user_id),
"memory_id": str(self.memory_id),
"ltm_memory_id": str(self.ltm_memory_id),
"st_memory_id": str(self.st_memory_id),
"buffer_id": str(self.buffer_id),
"version": params.get("version", None) or "",
"agreement_id": params.get("agreement_id", None) or "",
"privacy_policy": params.get("privacy_policy", None) or "",
"terms_of_service": params.get("terms_of_service", None) or "",
"format": params.get("format", None) or "",
"schema_version": params.get("schema_version", None) or "",
"checksum": params.get("checksum", None) or "",
"owner": params.get("owner", None) or "",
"license": params.get("license", None) or "",
"validity_start": params.get("validity_start", None) or "",
"validity_end": params.get("validity_end", None) or ""
# **source_metadata,
},
class_name="Test",
uuid=params.get("id", None),
consistency_level=weaviate.data.replication.ConsistencyLevel.ALL, # default QUORUM
)
return