ruff fixes

cognee-mcp/Dockerfile

@@ -26,20 +26,19 @@ RUN apt-get update && apt-get install -y \
     build-essential \
     && rm -rf /var/lib/apt/lists/*
 
-# Copy pyproject.toml and lockfile first for better caching
+# Copy main cognee project first (required dependency for cognee-mcp)
-COPY ./cognee-mcp/pyproject.toml ./cognee-mcp/uv.lock ./cognee-mcp/entrypoint.sh ./
+COPY pyproject.toml uv.lock ./
-
+COPY cognee/ ./cognee/
-# Install the project's dependencies using the lockfile and settings
-RUN --mount=type=cache,target=/root/.cache/uv \
-    uv sync --frozen --no-install-project --no-dev --no-editable
 
 # Copy Alembic configuration
 COPY alembic.ini /app/alembic.ini
 COPY alembic/ /app/alembic
 
-# Then, add the rest of the project source code and install it
+# Copy cognee-mcp project files
-# Installing separately from its dependencies allows optimal layer caching
+COPY ./cognee-mcp/pyproject.toml ./cognee-mcp/uv.lock ./cognee-mcp/entrypoint.sh ./
 COPY ./cognee-mcp /app
+
+# Install the project's dependencies using the lockfile and settings
 RUN --mount=type=cache,target=/root/.cache/uv \
     uv sync --frozen --no-dev --no-editable
 
@@ -51,7 +50,6 @@ RUN apt-get update && apt-get install -y \
 
 WORKDIR /app
 
-COPY --from=uv /root/.local /root/.local
 COPY --from=uv /app /app
 
 RUN chmod +x /app/entrypoint.sh

cognee-mcp/entrypoint.sh

@@ -24,7 +24,14 @@ echo "HTTP port: $HTTP_PORT"
 # smooth redeployments and container restarts while maintaining data integrity.
 echo "Running database migrations..."
 
-MIGRATION_OUTPUT=$(alembic upgrade head)
+# Detect if we're in Docker (alembic.ini in /app) or local (alembic.ini in parent dir)
+if [ -f "/app/alembic.ini" ]; then
+    MIGRATION_OUTPUT=$(alembic -c /app/alembic.ini upgrade head 2>&1)
+else
+    # Local execution - change to cognee root directory where alembic.ini exists
+    cd "$(dirname "$0")/.."
+    MIGRATION_OUTPUT=$(alembic upgrade head 2>&1)
+fi
 MIGRATION_EXIT_CODE=$?
 
 if [[ $MIGRATION_EXIT_CODE -ne 0 ]]; then

cognee-mcp/src/server.py

@@ -786,12 +786,24 @@ async def main():
 
     # Run Alembic migrations from the main cognee directory where alembic.ini is located
     print("Running database migrations...")
-    migration_result = subprocess.run(
+
-        ["python", "-m", "alembic", "upgrade", "head"],
+    # Detect if we're in Docker (alembic.ini in /app) or local (alembic.ini in parent dir)
-        capture_output=True,
+    if os.path.exists("/app/alembic.ini"):
-        text=True,
+        # Docker environment - use explicit config path
-        cwd=Path(__file__).resolve().parent.parent.parent,
+        migration_result = subprocess.run(
-    )
+            ["python", "-m", "alembic", "-c", "/app/alembic.ini", "upgrade", "head"],
+            capture_output=True,
+            text=True,
+            cwd="/app",
+        )
+    else:
+        # Local environment - use relative path
+        migration_result = subprocess.run(
+            ["python", "-m", "alembic", "upgrade", "head"],
+            capture_output=True,
+            text=True,
+            cwd=Path(__file__).resolve().parent.parent.parent,
+        )
 
     if migration_result.returncode != 0:
         migration_output = migration_result.stderr + migration_result.stdout