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Co-authored-by: vasilije <vas.markovic@gmail.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
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## Description
Update rel db example with better info
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Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
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## Description
PR from user jspv, running it through our branch to test CI/CD
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Signed-off-by: Diego B Theuerkauf <diego.theuerkauf@tuebingen.mpg.de>
Co-authored-by: Boris <boris@topoteretes.com>
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Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
Co-authored-by: Boris <boris@topoteretes.com>
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## Description
Removes unused properies from node and edge pydantic models.
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Co-authored-by: Boris <boris@topoteretes.com>
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Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
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Co-authored-by: vasilije <vas.markovic@gmail.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
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Co-authored-by: Matea Pesic <80577904+matea16@users.noreply.github.com>
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Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
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Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
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## Description
Resolve issue with missing name if no attribute
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## Description
Add fixes for logger, specifically:
- Add handler when users don't have microseconds
- Resolve issue with multiprocess logging
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## Description
- Fixes MCP server communication issue by switching to sys.stderr ( as
is default for python loggin )
- Adds needed api optional dependency for fastapi users
- Removes lock file as a new one will need to be made after new Cognee
release with api optional dependency
- Adds log file location to MCP tool call answer
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## Description
Add logging to logs file
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## Description
Introducing scructlog.
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## Description
Let's scope it out.
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit
- **New Features**
- Introduced support for the Kuzu graph database provider, enhancing
graph operations and data management capabilities.
- Added a comprehensive adapter for Kuzu, facilitating various graph
database operations.
- Expanded the enumeration of graph database types to include Kuzu.
- **Tests**
- Launched comprehensive asynchronous tests to validate the new Kuzu
graph integration’s performance and reliability.
- **Chores**
- Updated dependency settings and continuous integration workflows to
include the Kuzu provider, ensuring smoother deployments and improved
system quality.
- Enhanced configuration documentation to clarify Kuzu database
requirements.
- Modified Dockerfile to include Kuzu in the installation extras.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
Change Gemini adapter and data models so Gemini can use custom data
models
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit
- **New Features**
- Introduced provider-specific enhancements with updated data
representations, including improved node labeling and enriched summary
and description fields for graph displays.
- Improved configuration management by automatically loading environment
settings for better LLM operations.
- **Refactor**
- Streamlined response handling with a simplified approach for defining
output formats.
- Updated error handling by removing the try-except block for dotenv
imports.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
Reverts topoteretes/cognee#594
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit
- **New Features**
- Enhanced AI responses now deliver structured JSON output with clearly
defined sections, improving clarity and consistency.
- Standardized knowledge graph definitions provide a uniform
representation, simplifying integration and interpretation.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
Change data models and Gemini adapter so it can run custom ontologies
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## Summary by CodeRabbit
- **New Features**
- Improved AI response handling now provides more direct and reliable
output.
- Enhanced knowledge graph displays now include additional descriptive
details under advanced configurations.
- **Refactor**
- Streamlined processing logic reduces complexity and improves
consistency.
- Updated data structures now adapt automatically based on your AI
service configuration for a smoother experience.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
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## Description
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## Summary by CodeRabbit
- **New Features**
- Introduced an automated deployment workflow to build and push
container images.
- Updated dependency management to include additional database support.
- **Refactor**
- Enhanced asynchronous operations and logging in the server for
improved performance.
- Optimized extraction and retrieval processes for code-related data.
- **Chores**
- Streamlined build configurations and startup scripts for greater
reliability.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
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## Description
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## Summary by CodeRabbit
- **New Features**
- Enhanced code search and dependency analysis for improved accuracy.
- Introduced a new high-performance text embedding option.
- Added an additional execution entry point for code graph processing.
- New optional parameters for flexible property selection in retrieval
functions.
- Introduced new classes for handling import statements, function
definitions, and class definitions.
- Updated embedding engine selection based on configuration options.
- **Bug Fixes**
- Improved error handling in search operations and database queries for
a more stable user experience.
- Enhanced error logging for source code parsing.
- **Refactor**
- Streamlined asynchronous processing and refactored internal dependency
extraction.
- Updated configuration and integration settings to enhance overall
reliability.
- Restructured functions for simplified dependency handling.
- **Chores**
- Upgraded and reorganized dependency management with optional libraries
for extended functionality.
- Added new secret parameters for embedding configuration in workflow
settings.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: vasilije <vas.markovic@gmail.com>
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## Description
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit
- **New Features**
- Introduced enhanced visualization capabilities that let users launch a
dedicated server for visual displays.
- **Documentation**
- Updated several interactive notebooks to include execution outputs and
expanded explanatory content for better user guidance.
- **Style**
- Refined formatting and layout across notebooks to ensure consistent
presentation and improved readability.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit
- New Features
- Introduced version tracking and enhanced metadata in core data models
for improved data consistency.
- Bug Fixes
- Improved error handling during graph data loading to prevent
disruptions from unexpected identifier formats.
- Refactor
- Centralized identifier parsing and streamlined model definitions,
ensuring smoother and more consistent operations across search,
retrieval, and indexing workflows.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit
- **New Features**
• Graph visualizations now allow exporting to a user-specified file path
for more flexible output management.
• The text embedding process has been enhanced with an additional
tokenizer option for improved performance.
• A new `ExtendableDataPoint` class has been introduced for future
extensions.
• New JSON files for companies and individuals have been added to
facilitate testing and data processing.
- **Improvements**
• Search functionality now uses updated identifiers for more reliable
content retrieval.
• Metadata handling has been streamlined across various classes by
removing unnecessary type specifications.
• Enhanced serialization of properties in the Neo4j adapter for improved
handling of complex structures.
• The setup process for databases has been improved with a new
asynchronous setup function.
- **Chores**
• Dependency and configuration updates improve overall stability and
performance.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
This PR contains the improvement of the visualization endpoint
## DCO Affirmation
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit
- **New Features**
- Launched an enhanced interactive network visualization utility that
renders dynamic, browser-based graphs. The new feature simplifies
execution by directly generating an HTML file showcasing the
visualization—complete with interactive elements and an on-screen
confirmation—providing a more intuitive and efficient experience.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
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## Description
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit
- **Dependency Update**
- Downgraded `mcp` package version from 1.2.0 to 1.1.3
- Updated `cognee` dependency to include additional features with
`cognee[codegraph]`
- **New Features**
- Introduced a new tool, "codify", for transforming codebases into
knowledge graphs
- Enhanced the existing "search" tool to accept a new parameter for
search type
- **Improvements**
- Streamlined search functionality with a new modular approach
- Added new asynchronous function for retrieving and formatting code
parts
- **Documentation**
- Updated import paths for `SearchType` in various modules and tests to
reflect structural changes
- **Code Cleanup**
- Removed legacy search module and associated classes/functions
- Refined data transfer object classes for consistency and clarity
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
Currently TikToken is used for tokenizing by default which is only supported by OpenAI,
this is an initial commit in an attempt to add Cognee tokenizing support for multiple LLMs
