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## Description
Add tests for permissions for Cognee
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## Description
Modify endpoints to allow better security for different infrastructure
needs and setups
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## Description
Set default db to kuzu and remove networkx adapter due to community repo
adapter
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## Description
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---------
Signed-off-by: Diego B Theuerkauf <diego.theuerkauf@tuebingen.mpg.de>
Co-authored-by: Boris <boris@topoteretes.com>
Co-authored-by: vasilije <vas.markovic@gmail.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Matea Pesic <80577904+matea16@users.noreply.github.com>
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Daniel Molnar <soobrosa@gmail.com>
Co-authored-by: Diego Baptista Theuerkauf <34717973+diegoabt@users.noreply.github.com>
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Allow configuration of Host and Port for FastAPI via environment
variables
<!-- .github/pull_request_template.md -->
## Description
Starting the FastAPI server using environment variables for host and
port parameters.
## DCO Affirmation
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---------
Co-authored-by: kevco <kevin.cojean@agysoft.fr>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
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## Description
PR from user jspv, running it through our branch to test CI/CD
## DCO Affirmation
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Signed-off-by: Diego B Theuerkauf <diego.theuerkauf@tuebingen.mpg.de>
Co-authored-by: Boris <boris@topoteretes.com>
Co-authored-by: vasilije <vas.markovic@gmail.com>
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Co-authored-by: Daniel Molnar <soobrosa@gmail.com>
Co-authored-by: Diego Baptista Theuerkauf <34717973+diegoabt@users.noreply.github.com>
Co-authored-by: Dmitrii Galkin <36552323+dm1tryG@users.noreply.github.com>
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Co-authored-by: jspv <jspvgithub@twinleaf.xyz>
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## Description
Merge changes on main to dev
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## Description
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Co-authored-by: Boris <boris@topoteretes.com>
<!-- .github/pull_request_template.md -->
## Description
Adds subgraph retriever to graph based completion searches
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## Description
/api/v1/responses
In this PR manages function calls
- search
- cognify
- prune
Next steps
- codify
## DCO Affirmation
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Signed-off-by: Diego B Theuerkauf <diego.theuerkauf@tuebingen.mpg.de>
Co-authored-by: Hande <159312713+hande-k@users.noreply.github.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Diego Baptista Theuerkauf <34717973+diegoabt@users.noreply.github.com>
Co-authored-by: Boris <boris@topoteretes.com>
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## Description
Added tools to check current cognify and codify status
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Co-authored-by: Boris <boris@topoteretes.com>
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Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
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## Description
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<!-- .github/pull_request_template.md -->
## Description
Delete by document.
## DCO Affirmation
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the terms of the Topoteretes Developer Certificate of Origin
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## Description
Simplify Cognee pipeline usage for users
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the terms of the Topoteretes Developer Certificate of Origin
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## Description
Add ability to define top-k for Cognee search types Insights, RAG and
GRAPH Completion
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the terms of the Topoteretes Developer Certificate of Origin.
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## Description
Adds S3 support
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## Description
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- Extracted run_tasks_base function into a new file run_tasks_base.py.
- Extracted four executors that execute core logic based on the task
type.
- Extracted a task handler/wrapper that safely executes the core logic
with logging and telemetry.
- Fixed the inconsistency with the batches of size 1.
## DCO Affirmation
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## Description
Add relational db migration action
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Reverts topoteretes/cognee#690
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## Description
Introducing scructlog.
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## Description
Temporarily remove embedding env variables for code graph action so the
action can run
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **Chores**
- Removed legacy secret configuration from the testing workflow to
streamline the CI process and enhance maintainability.
- **Improvements**
- Updated the argument name in the code graph pipeline for clarity.
- Enhanced the handling of results in the example script to support
asynchronous processing.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
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## Description
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# Add Support for ChromaDB
## Summary
This PR adds support for ChromaDB as a vector database option in the
Cognee application. ChromaDB is a modern, open-source embedding database
designed for AI applications.
## Changes
- Created a new ChromaDBAdapter implementation for vector database
operations
- Added comprehensive test suite for ChromaDB functionality
- Updated docker-compose.yml to include ChromaDB service
- Modified environment configuration to support ChromaDB settings
- Updated vector engine creation logic to support ChromaDB as an option
## Technical Details
- Implemented `ChromaDBAdapter.py` (347 lines) with full CRUD operations
for vector data
- Created test suite (`test_chromadb.py`) with 171 lines of test
coverage
- Updated vector engine creation process to dynamically select ChromaDB
when configured
- Modified settings router to accommodate new database option
- Updated environment template with ChromaDB configuration options
## Docker Changes
- Added ChromaDB service to docker-compose.yml with appropriate
configuration
This PR enhances Cognee's flexibility by providing an alternative vector
database option, allowing users to choose the most appropriate database
for their specific use case.
## DCO Affirmation
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the terms of the Topoteretes Developer Certificate of Origin
Tested with UI + tests.
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Expanded vector database integration by adding support for Chromadb,
enabling enhanced data management and search functionalities.
- **Tests**
- Added automated tests to validate the Chromadb integration and related
operations.
- **Chores**
- Updated configuration guidance and dependency management to include
Chromadb.
- Provided an optional container deployment template for Chromadb.
- Added a new entry to ignore the `.chromadb_data/` directory in version
control.
- Introduced a new GitHub Actions workflow for testing Chromadb
integration.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
Added user authorization through JWT header, reworked user and relevant
RBAC models to accompany future User Permission system.
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the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Introduced an automated workflow to validate server startup.
- Added secure JWT token generation for improved session handling.
- Enabled a new structure for permission management with role and
tenant-based controls, including endpoints for creating roles, tenants,
and assigning permissions.
- Added methods for assigning default permissions to roles, tenants, and
users.
- Introduced new classes for managing default permissions for roles,
tenants, and users.
- **Refactor**
- Streamlined authentication and user management flows with enhanced
error handling.
- **Tests**
- Upgraded integration tests with improved database initialization and
data pruning for a more stable environment.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
<!-- .github/pull_request_template.md -->
## Description
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- Exposed chunk_size in get_default_tasks in cognify
- Reintegrated chunk_size in corpus building in eval framework
## DCO Affirmation
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Introduced an optional configuration parameter to allow users to set
custom processing segment sizes. This enhances flexibility in managing
content processing and task execution, enabling more dynamic control
over resource handling during corpus creation and related operations.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
This PR contains the ontology feature integrated into cognify
## DCO Affirmation
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Enhanced ontology management with the introduction of the
`OntologyResolver` class for improved data handling and querying.
- Expanded ontology framework now provides enriched coverage of
technology and automotive domains, including new entities and
relationships.
- Updated entity models now include a validation flag to support
improved data integrity.
- Added support for specifying an ontology file path in relevant
functions to enhance flexibility.
- **Refactor**
- Streamlined integration of ontology processing across data extraction
and workflow routines.
- **Chores**
- Updated project dependencies to include `owlready2` for advanced
ontology functionality.
- **Tests**
- Introduced a new test suite for the `OntologyResolver` class to
validate its functionality under various conditions.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
<!-- Provide a clear description of the changes in this PR -->
## DCO Affirmation
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<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **Refactor**
- Simplified text processing by unifying multiple size-related
parameters into a single metric across chunking and extraction
functionalities.
- Streamlined logic for text segmentation by removing redundant
calculations and checks, resulting in a more consistent chunk management
process.
- **Chores**
- Removed the `modal` package as a dependency.
- **Documentation**
- Updated the README.md to include a new demo video link and clarified
default environment variable settings.
- Enhanced the CONTRIBUTING.md to improve clarity and engagement for
potential contributors.
- **Bug Fixes**
- Improved handling of sentence-ending punctuation in text processing to
include additional characters.
- **Version Update**
- Updated project version to 0.1.33 in the pyproject.toml file.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
<!-- .github/pull_request_template.md -->
## Description
This PR contains eval framework changes due to the autooptimizer
integration
## DCO Affirmation
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the terms of the Topoteretes Developer Certificate of Origin
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
- **New Features**
- Enhanced answer generation now returns structured answer details.
- Search functionality accepts configurable prompt inputs.
- Option to generate a metrics dashboard from evaluations.
- Corpus building tasks now support adjustable chunk settings for
greater flexibility.
- New task retrieval functionality allows for flexible task
configuration.
- Introduced new methods for creating and managing metrics dashboards.
- **Refactor/Chore**
- Streamlined API signatures and reorganized module interfaces for
better consistency.
- Updated import paths to reflect new module structure.
- **Tests**
- Updated test scenarios to align with new configurations and parameter
adjustments.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
