Commit graph

577 commits

Author SHA1 Message Date
shehab-badawy
9c87a10848 feat: Add delete preview for --dataset-name and --all flags
This commit introduces the preview functionality for the  command. The preview displays a summary of what will be deleted before asking for user confirmation.

The feature is fully functional for the following flags:
-  / : Correctly counts the number of data entries within the specified dataset.
- : Correctly counts the total number of datasets, data entries, and users in the system.

The logic for the  flag is a work in progress. The current implementation uses a placeholder and needs a method to query a user directly by their ID to be completed.
2025-10-02 01:44:11 -04:00
shehab-badawy
de162cb491 feat: Add preview step to delete command
Signed-off-by: shehab-badawy <shehab.badawy001@gmail.com>
2025-09-26 22:38:16 -04:00
Boris
013baa3bfc
Merge branch 'dev' into remove-default-user-search 2025-09-25 21:02:00 +02:00
Igor Ilic
f09376429b refactor: Remove telemetry call 2025-09-25 17:39:29 +02:00
Boris
ade412cd9e
Merge branch 'dev' into remove-default-user-search 2025-09-25 17:10:15 +02:00
Boris
91f21247e0
Merge branch 'dev' into fix-only-context 2025-09-25 17:06:39 +02:00
Igor Ilic
d1724c710b refactor: Add proper pip install command for optional extras 2025-09-25 13:55:01 +02:00
Igor Ilic
8cbc3eb877 Merge branch 'dev' into COG-2826 2025-09-25 13:31:21 +02:00
Igor Ilic
a9c507b36e fix: Remove creation of default user during search 2025-09-23 18:43:05 +02:00
Igor Ilic
afa47c28b0 fix: Resolve issue with only_context 2025-09-23 13:41:12 +02:00
Igor Ilic
87c79b52e3 chore: format files 2025-09-22 11:33:19 +02:00
Igor Ilic
023f5ea632 Merge branch 'dev' into baml-refactor 2025-09-22 11:25:59 +02:00
Chaitany
96eb0d448a
feat(#1357): Lexical chunk retriever (#1392)
<!-- .github/pull_request_template.md -->

## Description
<!-- 
Please provide a clear, human-generated description of the changes in
this PR.
DO NOT use AI-generated descriptions. We want to understand your thought
process and reasoning.
-->
I Implemented Lexical Chunk Retriever In the LexicalRetriever class is
Inherite the BaseRetriever and The DocumentChunk are lazy loaded when
first time query is made because it save time during object
initialization
and the function get_context and the get_completion are Implemented same
as the ChunksRetriever the only diffrence is that the DocumentChunk are
converted to match the output type of the ChunksRetriever using function
get_own_properties in the utils.

## Type of Change
<!-- Please check the relevant option -->
- [-] Bug fix (non-breaking change that fixes an issue)
- [-] New feature (non-breaking change that adds functionality)
- [-] Breaking change (fix or feature that would cause existing
functionality to change)
- [-] Documentation update
- [-] Code refactoring
- [-] Performance improvement
- [-] Other (please specify):

## Changes Made
<!-- List the specific changes made in this PR -->
- Added LexicalRetriever base class with customizable tokenizer & scorer
     - Implemented caching of DocumentChunk tokens and payloads 
- Added robust initialization with error handling and logging -
Implemented get_context with top_k ranking and optional scores
- Implemented get_completion consistent with BaseRetriever interface
- Added JaccardChunksRetriever demo using set/multiset Jaccard
similarity
- Support for stopwords and multiset frequency-aware similarity -
Integrated logging for initialization, scoring, and retrieval

## Testing

- Manual tests: initialized retriever, retrieved chunks with toy corpus
    - Edge cases: empty corpus, empty query, scorer/tokenizer errors 
    - Verified Jaccard similarity results for single/multiset cases 
    - Code formatted and linted


## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [-] **I have tested my changes thoroughly before submitting this PR**
- [-] **This PR contains minimal changes necessary to address the
issue/feature**
- [-] My code follows the project's coding standards and style
guidelines
- [-] I have added tests that prove my fix is effective or that my
feature works
- [-] I have added necessary documentation (if applicable)
- [-] All new and existing tests pass
- [-] I have searched existing PRs to ensure this change hasn't been
submitted already
- [-] I have linked any relevant issues in the description
- [-] My commits have clear and descriptive messages

## Related Issues
<!-- Link any related issues using "Fixes #issue_number" or "Relates to
#issue_number" -->
Relates to  #1392
## Additional Notes
<!-- Add any additional notes, concerns, or context for reviewers -->
Int the cognee/modules/chunking/models/DocumentChunk.py
don't remove the optional  from is_part_of attributes.

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.

---------

Co-authored-by: Andrej Milicevic <milicevicandrej@yahoo.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Boris <boris@topoteretes.com>
Co-authored-by: lxobr <122801072+lxobr@users.noreply.github.com>
2025-09-19 18:24:33 +02:00
Vasilije
dd956eef43
Merge branch 'dev' into remove-langfuse-api-key-warning 2025-09-19 17:50:52 +02:00
Boris
88507cf903
Merge branch 'main' into dev 2025-09-19 17:27:48 +02:00
hajdul88
28ed9c4c73 ruff formatting 2025-09-19 13:58:18 +02:00
hajdul88
ea487d2ca3 adds: ads default handling in expand_with_nodes_and_edges 2025-09-19 13:56:11 +02:00
hajdul88
2f225c9e03 feat: adds ontology resolver env handling 2025-09-19 12:54:33 +02:00
hajdul88
95d8992140
Merge branch 'dev' into feature/cog-2950-ontologyresolver-abstraction 2025-09-19 10:33:21 +02:00
Daulet Amirkhanov
45ed5df1f3 remove starter notebook creation from create_user 2025-09-18 18:22:02 +01:00
Daulet Amirkhanov
7ccd312c2c create starter notebook on get all notebooks request - if not created 2025-09-18 18:21:42 +01:00
hajdul88
7c33418ae9 chore: adds and updates docstrings 2025-09-18 18:24:15 +02:00
hajdul88
28942a20ef
Merge branch 'dev' into feature/cog-2950-ontologyresolver-abstraction 2025-09-18 18:20:17 +02:00
Daulet Amirkhanov
f58ba86e7c
feat: add welcome tutorial notebook for new users (#1425)
<!-- .github/pull_request_template.md -->

## Description
<!-- 
Please provide a clear, human-generated description of the changes in
this PR.
DO NOT use AI-generated descriptions. We want to understand your thought
process and reasoning.
-->

Update default tutorial:
1. Use tutorial from [notebook_tutorial
branch](https://github.com/topoteretes/cognee/blob/notebook_tutorial/notebooks/tutorial.ipynb),
specifically - it's .zip version with all necessary data files
2. Use Jupyter Notebook `Notebook` abstractions to read, and map `ipynb`
into our Notebook model
3. Dynamically update starter notebook code blocks that reference
starter data files, and swap them with local paths to downloaded copies
4. Test coverage



| Before | After (storage backend = local) | After (s3) |
|--------|---------------------------------|------------|
| <img width="613" height="546" alt="Screenshot 2025-09-17 at 01 00 58"
src="https://github.com/user-attachments/assets/20b59021-96c1-4a83-977f-e064324bd758"
/> | <img width="1480" height="262" alt="Screenshot 2025-09-18 at 13 01
57"
src="https://github.com/user-attachments/assets/bd56ea78-7c6a-42e3-ae3f-4157da231b2d"
/> | <img width="1485" height="307" alt="Screenshot 2025-09-18 at 12 56
08"
src="https://github.com/user-attachments/assets/248ae720-4c78-445a-ba8b-8a2991ed3f80"
/> |



## File Replacements

### S3 Demo  

https://github.com/user-attachments/assets/bd46eec9-ef77-4f69-9ef0-e7d1612ff9b3

---

### Local FS Demo  

https://github.com/user-attachments/assets/8251cea0-81b3-4cac-a968-9576c358f334


## Type of Change
<!-- Please check the relevant option -->
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- [x] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Other (please specify):

## Changes Made
<!-- List the specific changes made in this PR -->
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- 
- 

## Testing
<!-- Describe how you tested your changes -->

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
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- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
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guidelines
- [ ] I have added tests that prove my fix is effective or that my
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## Related Issues
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## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
2025-09-18 18:07:05 +02:00
hajdul88
94373e5a01 feat: adds new config structure based on requirements 2025-09-18 17:24:23 +02:00
Hande
3426f23452 add none to default as observability 2025-09-18 10:41:25 +02:00
Vasilije
9de69d2bab
docs: Add docstrings for permission related functions. (#1427)
<!-- .github/pull_request_template.md -->

## Description
<!-- 
Please provide a clear, human-generated description of the changes in
this PR.
DO NOT use AI-generated descriptions. We want to understand your thought
process and reasoning.
-->
Added docs that were missing from permission related functions in the
code.

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Changes Made
<!-- List the specific changes made in this PR -->
- 
- 
- 

## Testing
<!-- Describe how you tested your changes -->

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
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issue/feature**
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## DCO Affirmation
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the terms of the Topoteretes Developer Certificate of Origin.
2025-09-17 13:36:47 -07:00
Andrej Milićević
f4b22dfe04
Merge branch 'main' into feature/cog-2427-add-docstrings-to-permission-related-functions 2025-09-17 18:13:24 +02:00
hajdul88
95a815be5b
Merge branch 'dev' into feature/cog-2950-ontologyresolver-abstraction 2025-09-17 16:13:35 +02:00
hajdul88
46e3fca228
Fix: fixes infinite loop introduced in combined search refactor (#1434)
## Description
Fixes infinite loop introduced in combined search refactor

## Type of Change
<!-- Please check the relevant option -->
- [x] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Changes Made
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Fixes infinite loop introduced in combined search refactor

## Testing
Manual

## Screenshots/Videos (if applicable)
None

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [x] **I have tested my changes thoroughly before submitting this PR**
- [x] **This PR contains minimal changes necessary to address the
issue/feature**
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guidelines
- [x] I have added tests that prove my fix is effective or that my
feature works
- [x] I have added necessary documentation (if applicable)
- [x] All new and existing tests pass
- [x] I have searched existing PRs to ensure this change hasn't been
submitted already
- [x] I have linked any relevant issues in the description
- [x] My commits have clear and descriptive messages

## Related Issues
https://github.com/topoteretes/cognee/pull/1341

## Additional Notes
None

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.
2025-09-17 16:11:09 +02:00
hajdul88
f4c70cc315 feat: adds tests for the new logic + fixes the case when only matching is provided 2025-09-17 14:39:43 +02:00
hajdul88
7c046eafab feat: adds get_ontology_resolver + typed dict to hold params 2025-09-17 13:28:11 +02:00
hajdul88
6261fca0c4 feat: adds default ontology resolver 2025-09-17 12:44:04 +02:00
hajdul88
00c3ba3a0c ruff fix 2025-09-17 12:24:39 +02:00
hajdul88
93a383b56a feat: adds matching strategies and moves resolver 2025-09-17 12:23:30 +02:00
hajdul88
f331cf85fb
Merge branch 'dev' into feature/cog-2950-ontologyresolver-abstraction 2025-09-17 12:05:00 +02:00
hajdul88
f651991c86 feat: adds base class + renames rdflib implementation 2025-09-17 12:02:38 +02:00
Andrej Milicevic
475749b8de docs: Updated some docs, not a lot was necessary 2025-09-17 11:47:37 +02:00
Igor Ilic
88770b1b11
refactor: Use awaitable attrs for getting roles (#1405)
<!-- .github/pull_request_template.md -->

## Description
Resolve issue with getting role objects for user

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Performance improvement
- [ ] Other (please specify):

## Changes Made
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- 
- 
- 

## Testing
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## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

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guidelines
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feature works
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- [ ] All new and existing tests pass
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submitted already
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#issue_number" -->

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## DCO Affirmation
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the terms of the Topoteretes Developer Certificate of Origin.

Co-authored-by: Boris <boris@topoteretes.com>
2025-09-17 11:16:20 +02:00
Igor Ilic
f93b7686c3
fix: Resolve issue with Data object serialization (#1407)
<!-- .github/pull_request_template.md -->

## Description
Enable Data object serialization when returning PipelineRunInfo type
objects in backend

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
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functionality to change)
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- [ ] Code refactoring
- [ ] Performance improvement
- [ ] Other (please specify):

## Changes Made
<!-- List the specific changes made in this PR -->
- 
- 
- 

## Testing
<!-- Describe how you tested your changes -->

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

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issue/feature**
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guidelines
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feature works
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- [ ] All new and existing tests pass
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submitted already
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## DCO Affirmation
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2025-09-17 11:14:05 +02:00
Igor Ilic
e849e12567
refactor: make cypher query optional (#1418)
<!-- .github/pull_request_template.md -->

## Description
Make Cypher search optional

## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
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- [ ] Code refactoring
- [ ] Performance improvement
- [x] Other (please specify):
Security upgrade

## Changes Made
Made cypher search optional for security reasons

## Testing
Tried running cypher queries with feature turned on and off

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<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
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issue/feature**
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guidelines
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feature works
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submitted already
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the terms of the Topoteretes Developer Certificate of Origin.
2025-09-17 10:56:35 +02:00
Andrej Milicevic
293a0e0053 Fix formatiing 2025-09-17 10:45:36 +02:00
Andrej Milicevic
30df102656 docs: Add docstrings for permission related functions. 2025-09-17 10:42:11 +02:00
Boris
7f775ace7c
Merge dev into main (#1422)
<!-- .github/pull_request_template.md -->

## Description
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DO NOT use AI-generated descriptions. We want to understand your thought
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## Type of Change
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- [ ] New feature (non-breaking change that adds functionality)
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functionality to change)
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- [ ] Other (please specify):

## Changes Made
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- 
- 
- 

## Testing
<!-- Describe how you tested your changes -->

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

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- [ ] All new and existing tests pass
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## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.

---------

Co-authored-by: Igor Ilic <igorilic03@gmail.com>
Co-authored-by: Igor Ilic <30923996+dexters1@users.noreply.github.com>
Co-authored-by: hajdul88 <52442977+hajdul88@users.noreply.github.com>
Co-authored-by: Gao,Wei <kaovip@gmail.com>
Co-authored-by: Vasilije <8619304+Vasilije1990@users.noreply.github.com>
Co-authored-by: Andrej Milicevic <milicevicandrej@yahoo.com>
2025-09-17 10:32:10 +02:00
Boris
3e870a076e
fix: combined context search (#1420)
<!-- .github/pull_request_template.md -->

## Description
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this PR.
DO NOT use AI-generated descriptions. We want to understand your thought
process and reasoning.
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## Type of Change
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- [ ] New feature (non-breaking change that adds functionality)
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functionality to change)
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- [ ] Performance improvement
- [ ] Other (please specify):

## Changes Made
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- 
- 
- 

## Testing
<!-- Describe how you tested your changes -->

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<!-- Add screenshots or videos to help explain your changes -->

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feature works
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- [x] All new and existing tests pass
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submitted already
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- [x] My commits have clear and descriptive messages

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2025-09-16 21:51:26 +02:00
Igor Ilic
288218b209
Merge dev into main (#1398)
<!-- .github/pull_request_template.md -->

## Description
Vector URL fix, MCP Fix

## Type of Change
<!-- Please check the relevant option -->
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- [ ] Performance improvement
- [ ] Other (please specify):

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- 
- 
- 

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<!-- Add screenshots or videos to help explain your changes -->

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feature works
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Co-authored-by: Boris <boris@topoteretes.com>
Co-authored-by: Boris Arzentar <borisarzentar@gmail.com>
2025-09-12 20:20:21 +02:00
Boris
351deb0314
fix: UI (#1397)
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2025-09-12 20:06:44 +02:00
Igor Ilic
e5381e110f fix: Return search backward compatibility 2025-09-11 21:08:13 +02:00
Igor Ilic
89207780e9 fix: Resolve backwards compatibility of search 2025-09-11 20:25:03 +02:00
Boris
74a3220e9f
fix: graph view with search (#1368)
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2025-09-11 16:16:03 +02:00