0.1.41 Release fixes (#889)

<!-- .github/pull_request_template.md -->

## Description
<!-- Provide a clear description of the changes in this PR -->

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.

Dockerfile

@@ -45,6 +45,10 @@ uv sync --extra debug --extra api --extra postgres --extra weaviate --extra qdra
 
 FROM python:3.12-slim-bookworm
 
+RUN apt-get update && apt-get install -y \
+    libpq5 \
+    && rm -rf /var/lib/apt/lists/*
+
 WORKDIR /app
 
 COPY --from=uv /app /app
@@ -57,5 +61,7 @@ RUN chmod +x /app/entrypoint.sh
 ENV PATH="/app/.venv/bin:$PATH"
 
 ENV PYTHONPATH=/app
+# ENV LOG_LEVEL=ERROR
+ENV PYTHONUNBUFFERED=1
 
 ENTRYPOINT ["/app/entrypoint.sh"]

alembic/versions/482cd6517ce4_add_default_user.py

@@ -21,10 +21,7 @@ depends_on: Union[str, Sequence[str], None] = "8057ae7329c2"
 
 
 def upgrade() -> None:
-    try:
+    await_only(create_default_user())
-        await_only(create_default_user())
-    except Exception:
-        pass
 
 
 def downgrade() -> None:

cognee-mcp/Dockerfile

@@ -48,6 +48,10 @@ RUN --mount=type=cache,target=/root/.cache/uv \
 
 FROM python:3.12-slim-bookworm
 
+RUN apt-get update && apt-get install -y \
+    libpq5 \
+    && rm -rf /var/lib/apt/lists/*
+
 WORKDIR /app
 
 COPY --from=uv /root/.local /root/.local

cognee-mcp/entrypoint.sh

@@ -13,17 +13,22 @@ echo "Environment: $ENVIRONMENT"
 # inconsistencies and should cause the startup to fail. This check allows for
 # smooth redeployments and container restarts while maintaining data integrity.
 echo "Running database migrations..."
-MIGRATION_OUTPUT=$(uv run alembic upgrade head 2>&1) || {
+
-    if [[ $MIGRATION_OUTPUT == *"UserAlreadyExists"* ]] || [[ $MIGRATION_OUTPUT == *"User default_user@example.com already exists"* ]]; then
+MIGRATION_OUTPUT=$(alembic upgrade head 2>&1)
+MIGRATION_EXIT_CODE=$?
+
+if [[ $MIGRATION_EXIT_CODE -ne 0 ]]; then
+    if [[ "$MIGRATION_OUTPUT" == *"UserAlreadyExists"* ]] || [[ "$MIGRATION_OUTPUT" == *"User default_user@example.com already exists"* ]]; then
         echo "Warning: Default user already exists, continuing startup..."
     else
-        echo "Migration failed with unexpected error:"
+        echo "Migration failed with unexpected error."
-        echo "$MIGRATION_OUTPUT"
         exit 1
     fi
-}
+fi
 
-echo "Starting Cognee MCP Server"
+echo "Database migrations done."
+
+echo "Starting Cognee MCP Server..."
 
 # Add startup delay to ensure DB is ready
 sleep 2

cognee/infrastructure/databases/graph/__init__.py

@@ -1,2 +1,3 @@
 from .config import get_graph_config
 from .get_graph_engine import get_graph_engine
+from .use_graph_adapter import use_graph_adapter

cognee/infrastructure/databases/graph/get_graph_engine.py

@@ -2,8 +2,10 @@
 
 from functools import lru_cache
 
+
 from .config import get_graph_config
 from .graph_db_interface import GraphDBInterface
+from .supported_databases import supported_databases
 
 
 async def get_graph_engine() -> GraphDBInterface:
@@ -74,6 +76,15 @@ def create_graph_engine(
         specified.
     """
 
+    if graph_database_provider in supported_databases:
+        adapter = supported_databases[graph_database_provider]
+
+        return adapter(
+            graph_database_url=graph_database_url,
+            graph_database_username=graph_database_username,
+            graph_database_password=graph_database_password,
+        )
+
     if graph_database_provider == "neo4j":
         if not (graph_database_url and graph_database_username and graph_database_password):
             raise EnvironmentError("Missing required Neo4j credentials.")

cognee/infrastructure/databases/graph/supported_databases.py

@@ -0,0 +1 @@
+supported_databases = {}

cognee/infrastructure/databases/graph/use_graph_adapter.py

@@ -0,0 +1,5 @@
+from .supported_databases import supported_databases
+
+
+def use_graph_adapter(vector_db_name, vector_db_adapter):
+    supported_databases[vector_db_name] = vector_db_adapter

cognee/infrastructure/databases/vector/__init__.py

@@ -3,3 +3,4 @@ from .models.CollectionConfig import CollectionConfig
 from .vector_db_interface import VectorDBInterface
 from .config import get_vectordb_config
 from .get_vector_engine import get_vector_engine
+from .use_vector_adapter import use_vector_adapter

cognee/infrastructure/databases/vector/create_vector_engine.py

@@ -1,3 +1,4 @@
+from .supported_databases import supported_databases
 from .embeddings import get_embedding_engine
 
 from functools import lru_cache
@@ -38,6 +39,15 @@ def create_vector_engine(
     """
     embedding_engine = get_embedding_engine()
 
+    if vector_db_provider in supported_databases:
+        adapter = supported_databases[vector_db_provider]
+
+        return adapter(
+            utl=vector_db_url,
+            api_key=vector_db_key,
+            embedding_engine=embedding_engine,
+        )
+
     if vector_db_provider == "weaviate":
         from .weaviate_db import WeaviateAdapter
 

cognee/infrastructure/databases/vector/supported_databases.py

@@ -0,0 +1 @@
+supported_databases = {}

cognee/infrastructure/databases/vector/use_vector_adapter.py

@@ -0,0 +1,5 @@
+from .supported_databases import supported_databases
+
+
+def use_vector_adapter(vector_db_name, vector_db_adapter):
+    supported_databases[vector_db_name] = vector_db_adapter

docker-compose.yml

@@ -13,7 +13,7 @@ services:
       - DEBUG=false # Change to true if debugging
       - HOST=0.0.0.0
       - ENVIRONMENT=local
-      - PYTHONPATH=.
+      - LOG_LEVEL=ERROR
     extra_hosts:
       # Allows the container to reach your local machine using "host.docker.internal" instead of "localhost"
       - "host.docker.internal:host-gateway"

entrypoint.sh

@@ -13,15 +13,19 @@ echo "Environment: $ENVIRONMENT"
 # inconsistencies and should cause the startup to fail. This check allows for
 # smooth redeployments and container restarts while maintaining data integrity.
 echo "Running database migrations..."
-MIGRATION_OUTPUT=$(alembic upgrade head 2>&1) || {
+
-    if [[ $MIGRATION_OUTPUT == *"UserAlreadyExists"* ]] || [[ $MIGRATION_OUTPUT == *"User default_user@example.com already exists"* ]]; then
+MIGRATION_OUTPUT=$(alembic upgrade head 2>&1)
+MIGRATION_EXIT_CODE=$?
+
+if [[ $MIGRATION_EXIT_CODE -ne 0 ]]; then
+    if [[ "$MIGRATION_OUTPUT" == *"UserAlreadyExists"* ]] || [[ "$MIGRATION_OUTPUT" == *"User default_user@example.com already exists"* ]]; then
         echo "Warning: Default user already exists, continuing startup..."
     else
-        echo "Migration failed with unexpected error:"
+        echo "Migration failed with unexpected error."
-        echo "$MIGRATION_OUTPUT"
         exit 1
     fi
-}
+fi
+
 echo "Database migrations done."
 
 echo "Starting server..."