Merge branch 'dev' into ffix_sec

2026-01-08 21:29:02 +01:00 · 2026-01-08 21:29:02 +01:00 · c3c8961631
commit c3c8961631
parent 1eb4197f1a abc6faff34
94 changed files with 257 additions and 269 deletions
--- a/cognee/api/.env.example
+++ b/cognee/api/.env.example
@ -3,3 +3,7 @@
 # CORS_ALLOWED_ORIGINS="https://yourdomain.com,https://another.com"
 # For local development, you might use:
 # CORS_ALLOWED_ORIGINS="http://localhost:3000"
+
+LLM_API_KEY="your-openai-api-key"
+LLM_MODEL="openai/gpt-4o-mini"
+LLM_PROVIDER="openai"
--- a/.github/ISSUE_TEMPLATE/documentation.yml
+++ b/.github/ISSUE_TEMPLATE/documentation.yml
@ -71,4 +71,3 @@ body:
          required: true
        - label: I have specified the location of the documentation issue
          required: true
-
--- a/.github/ISSUE_TEMPLATE/feature_request.yml
+++ b/.github/ISSUE_TEMPLATE/feature_request.yml
@ -75,4 +75,3 @@ body:
          required: true
        - label: I have described my specific use case
          required: true
-
--- a/.github/core-team.txt
+++ b/.github/core-team.txt
@ -8,5 +8,3 @@ lxobr
 pazone
 siillee
 vasilije1990
-
-
--- a/.github/pull_request_template.md
+++ b/.github/pull_request_template.md
@ -10,26 +10,21 @@ DO NOT use AI-generated descriptions. We want to understand your thought process
 <!--
 * Key requirements to the new feature or modification;
 * Proof that the changes work and meet the requirements;
-* Include instructions on how to verify the changes. Describe how to test it locally;
-* Proof that it's sufficiently tested.
 -->

 ## Type of Change
 <!-- Please check the relevant option -->
 - [ ] Bug fix (non-breaking change that fixes an issue)
 - [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing functionality to change)
- [ ] Documentation update
 - [ ] Code refactoring
- [ ] Performance improvement
 - [ ] Other (please specify):

-## Screenshots/Videos (if applicable)
-<!-- Add screenshots or videos to help explain your changes -->
+## Screenshots
+<!-- ADD SCREENSHOT OF LOCAL TESTS PASSING-->

 ## Pre-submission Checklist
 <!-- Please check all boxes that apply before submitting your PR -->
- [ ] **I have tested my changes thoroughly before submitting this PR**
+- [ ] **I have tested my changes thoroughly before submitting this PR** (See `CONTRIBUTING.md`)
 - [ ] **This PR contains minimal changes necessary to address the issue/feature**
 - [ ] My code follows the project's coding standards and style guidelines
 - [ ] I have added tests that prove my fix is effective or that my feature works
--- a/.github/workflows/label-core-team.yml
+++ b/.github/workflows/label-core-team.yml
@ -72,5 +72,3 @@ jobs:
            } catch (error) {
              core.warning(`Failed to add label: ${error.message}`);
            }
-
-
--- a/.github/workflows/load_tests.yml
+++ b/.github/workflows/load_tests.yml
@ -66,5 +66,3 @@ jobs:
          AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_DEV_USER_KEY_ID }}
          AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_DEV_USER_SECRET_KEY }}
        run: uv run python ./cognee/tests/test_load.py
-  
-    
--- a/.github/workflows/pre_test.yml
+++ b/.github/workflows/pre_test.yml
@ -5,7 +5,7 @@ permissions:
  contents: read
 jobs:
  check-uv-lock:
-    name: Validate uv lockfile and project metadata
+    name: Lockfile and Pre-commit Hooks
    runs-on: ubuntu-22.04
    steps:
      - name: Check out repository
@ -20,3 +20,6 @@ jobs:

      - name: Validate uv lockfile and project metadata
        run: uv lock --check || { echo "'uv lock --check' failed."; echo "Run 'uv lock' and push your changes."; exit 1; }
+
+      - name: Run pre-commit hooks
+        uses: pre-commit/action@v3.0.1
--- a/.github/workflows/release_test.yml
+++ b/.github/workflows/release_test.yml
@ -15,4 +15,3 @@ jobs:
    name: Load Tests
    uses: ./.github/workflows/load_tests.yml
    secrets: inherit
-
--- a/.gitignore
+++ b/.gitignore
@ -147,6 +147,7 @@ venv/
 ENV/
 env.bak/
 venv.bak/
+mise.toml

 # Spyder project settings
 .spyderproject
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@ -7,6 +7,7 @@ repos:
    -   id: trailing-whitespace
    -   id: end-of-file-fixer
    -   id: check-yaml
+        exclude: ^deployment/helm/templates/
    -   id: check-added-large-files
 - repo: https://github.com/astral-sh/ruff-pre-commit
  # Ruff version.
--- a/AGENTS.md
+++ b/AGENTS.md
@ -128,5 +128,3 @@ MCP server and Frontend:
 ## CI Mirrors Local Commands

 Our GitHub Actions run the same ruff checks and pytest suites shown above (`.github/workflows/basic_tests.yml` and related workflows). Use the commands in this document locally to minimize CI surprises.
-
-
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@ -62,6 +62,11 @@ Looking for a place to start? Try filtering for [good first issues](https://gith

 ## 2. 🛠️ Development Setup

+### Required tools
+* [Python](https://www.python.org/downloads/)
+* [uv](https://docs.astral.sh/uv/getting-started/installation/)
+* pre-commit: `uv run pip install pre-commit && pre-commit install`
+
 ### Fork and Clone

 1. Fork the [**cognee**](https://github.com/topoteretes/cognee) repository
@ -93,29 +98,31 @@ git checkout -b feature/your-feature-name
 4. **Commits**: Write clear commit messages

 ### Running Tests
+
+Rename `.env.example` into `.env` and provide your OPENAI_API_KEY as LLM_API_KEY
+
 ```shell
-python cognee/cognee/tests/test_library.py
+uv run python cognee/tests/test_library.py
 ```

 ### Running Simple Example

-Change .env.example into .env and provide your OPENAI_API_KEY as LLM_API_KEY
+Rename `.env.example` into `.env` and provide your OPENAI_API_KEY as LLM_API_KEY

 Make sure to run ```shell uv sync ``` in the root cloned folder or set up a virtual environment to run cognee

 ```shell
-python cognee/cognee/examples/python/simple_example.py
+python examples/python/simple_example.py
 ```
 or

 ```shell
-uv run python cognee/cognee/examples/python/simple_example.py
+uv run python examples/python/simple_example.py
 ```

 ## 4. 📤 Submitting Changes

-1. Install ruff on your system
-2. Run ```ruff format .``` and ``` ruff check ``` and fix the issues
+1. Make sure that `pre-commit` and hooks are installed. See `Required tools` section for more information. Try executing `pre-commit run` if you are not sure.
 3. Push your changes:
 ```shell
 git add .
--- a/cognee-frontend/src/ui/elements/Modal/index.ts
+++ b/cognee-frontend/src/ui/elements/Modal/index.ts
@ -1,3 +1,2 @@
 export { default as Modal } from "./Modal";
 export { default as useModal } from "./useModal";
-
--- a/cognee-frontend/src/ui/elements/Notebook/MarkdownPreview.tsx
+++ b/cognee-frontend/src/ui/elements/Notebook/MarkdownPreview.tsx
@ -74,4 +74,3 @@ function MarkdownPreview({ content, className = "" }: MarkdownPreviewProps) {
 }

 export default memo(MarkdownPreview);
-
--- a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/copilot_conversations.json
+++ b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/copilot_conversations.json
@ -105,4 +105,3 @@
    }
  }
 }
-
--- a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/pep_style_guide.md
+++ b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/pep_style_guide.md
@ -72,4 +72,3 @@ profile = "black"
 - E501: line too long -> break with parentheses
 - E225: missing whitespace around operator
 - E402: module import not at top of file
-
--- a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/zen_principles.md
+++ b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/zen_principles.md
@ -72,4 +72,3 @@ Use modules/packages to separate concerns; avoid wildcard imports.
 - Is this the simplest working solution?
 - Are errors explicit and logged?
 - Are modules/namespaces used appropriately?
-
--- a/cognee/modules/retrieval/init.py
+++ b/cognee/modules/retrieval/init.py
@ -1 +0,0 @@
-
--- a/cognee/tasks/temporal_graph/init.py
+++ b/cognee/tasks/temporal_graph/init.py
@ -1 +0,0 @@
-
--- a/deployment/helm/docker-compose-helm.yml
+++ b/deployment/helm/docker-compose-helm.yml
@ -43,4 +43,3 @@ networks:

 volumes:
  postgres_data:
-
--- a/deployment/helm/templates/postgres_service.yaml
+++ b/deployment/helm/templates/postgres_service.yaml
@ -11,4 +11,3 @@ spec:
      targetPort: {{ .Values.postgres.port }}
  selector:
    app: {{ .Release.Name }}-postgres
-
--- a/examples/python/weighted_graph_visualization.html
+++ b/examples/python/weighted_graph_visualization.html
@ -209,4 +209,3 @@
        </svg>
    </body>
    </html>
-    
--- a/mise.toml
+++ b/mise.toml
@ -0,0 +1,2 @@
+[tools]
+python = "latest"
--- a/new-examples/custom_pipelines/organizational_hierarchy/data/companies.json
+++ b/new-examples/custom_pipelines/organizational_hierarchy/data/companies.json
@ -36,4 +36,3 @@
    ]
  }
 ]
-
--- a/new-examples/custom_pipelines/organizational_hierarchy/data/people.json
+++ b/new-examples/custom_pipelines/organizational_hierarchy/data/people.json
@ -50,4 +50,3 @@
    "department": "HR"
  }
 ]
-
--- a/new-examples/custom_pipelines/product_recommendation/data/customers.json
+++ b/new-examples/custom_pipelines/product_recommendation/data/customers.json
@ -106,4 +106,3 @@
    "action": "purchased"
  }]
 }]
-
--- a/pyproject.toml
+++ b/pyproject.toml
@ -60,7 +60,9 @@ dependencies = [
    "fakeredis[lua]>=2.32.0",
    "diskcache>=5.6.3",
    "aiolimiter>=1.2.1",
-    "urllib3>=2.6.0"
+    "urllib3>=2.6.0",
+    "cbor2>=5.8.0"
+
 ]

 [project.optional-dependencies]
--- a/tools/check-package.sh
+++ b/tools/check-package.sh
@ -58,4 +58,3 @@ fi

 # error in package
 exit 1
-
--- a/uv.lock
+++ b/uv.lock
@ -675,43 +675,39 @@ wheels = [

 [[package]]
 name = "cbor2"
-version = "5.7.1"
+version = "5.8.0"
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+sdist = { url = "https://files.pythonhosted.org/packages/d9/8e/8b4fdde28e42ffcd741a37f4ffa9fb59cd4fe01625b544dfcfd9ccb54f01/cbor2-5.8.0.tar.gz", hash = "sha256:b19c35fcae9688ac01ef75bad5db27300c2537eb4ee00ed07e05d8456a0d4931", size = 107825 }
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 [[package]]
@ -953,6 +949,7 @@ dependencies = [
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    { name = "aiosqlite" },
    { name = "alembic" },
+    { name = "cbor2" },
    { name = "diskcache" },
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    { name = "fastapi" },
@ -1136,6 +1133,7 @@ requires-dist = [
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