gmakstutis/cognee
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

Fix: fixes networkx failed to load graph from file error

Browse source
This commit is contained in:
hajdul88 2025-01-20 12:19:34 +01:00
parent 7932cf7159
commit bf70705ed0
1 changed files with 24 additions and 6 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

30
cognee/infrastructure/databases/graph/networkx/adapter.py
View file

@ -250,7 +250,8 @@ class NetworkXAdapter(GraphDBInterface):
graph_data = nx.readwrite.json_graph.node_link_data(self.graph) graph_data = nx.readwrite.json_graph.node_link_data(self.graph)
async with aiofiles.open(file_path, "w") as file: async with aiofiles.open(file_path, "w") as file:
await file.write(json.dumps(graph_data, cls=JSONEncoder)) json_data = json.dumps(graph_data, cls=JSONEncoder)
await file.write(json_data)
async def load_graph_from_file(self, file_path: str = None): async def load_graph_from_file(self, file_path: str = None):
"""Asynchronously load the graph from a file in JSON format.""" """Asynchronously load the graph from a file in JSON format."""
@ -265,19 +266,32 @@ class NetworkXAdapter(GraphDBInterface):
graph_data = json.loads(await file.read()) graph_data = json.loads(await file.read())
for node in graph_data["nodes"]: for node in graph_data["nodes"]:
try: try:
node["id"] = UUID(node["id"]) if not isinstance(node["id"], UUID):
node["id"] = UUID(node["id"])
except Exception as e: except Exception as e:
print(e) print(e)
pass pass
if "updated_at" in node:
if isinstance(node.get("updated_at"), int):
node["updated_at"] = datetime.fromtimestamp(
node["updated_at"] / 1000, tz=timezone.utc
)
elif isinstance(node.get("updated_at"), str):
node["updated_at"] = datetime.strptime( node["updated_at"] = datetime.strptime(
node["updated_at"], "%Y-%m-%dT%H:%M:%S.%f%z" node["updated_at"], "%Y-%m-%dT%H:%M:%S.%f%z"
) )
for edge in graph_data["links"]: for edge in graph_data["links"]:
try: try:
source_id = UUID(edge["source"]) if not isinstance(edge["source"], UUID):
target_id = UUID(edge["target"]) source_id = UUID(edge["source"])
else:
source_id = edge["source"]
if not isinstance(edge["target"], UUID):
target_id = UUID(edge["target"])
else:
target_id = edge["target"]
edge["source"] = source_id edge["source"] = source_id
edge["target"] = target_id edge["target"] = target_id
@ -287,7 +301,11 @@ class NetworkXAdapter(GraphDBInterface):
print(e) print(e)
pass pass
if "updated_at" in edge: if isinstance(edge["updated_at"], int): # Handle timestamp in milliseconds
edge["updated_at"] = datetime.fromtimestamp(
edge["updated_at"] / 1000, tz=timezone.utc
)
elif isinstance(edge["updated_at"], str):
edge["updated_at"] = datetime.strptime( edge["updated_at"] = datetime.strptime(
edge["updated_at"], "%Y-%m-%dT%H:%M:%S.%f%z" edge["updated_at"], "%Y-%m-%dT%H:%M:%S.%f%z"
) )