Merge remote-tracking branch 'origin/main' into code-graph

.gitignore

@@ -14,7 +14,6 @@ __pycache__/
 *$py.class
 
 full_run.ipynb
-logs/
 
 # C extensions
 *.so

cognee/__init__.py

@@ -1,9 +1,14 @@
-from .api.v1.config.config import config
 from .api.v1.add import add
 from .api.v1.cognify import cognify
+from .api.v1.config.config import config
 from .api.v1.datasets.datasets import datasets
-from .api.v1.search import search, SearchType, get_search_history
 from .api.v1.prune import prune
-
+from .api.v1.search import SearchType, get_search_history, search
 # Pipelines
 from .modules import pipelines
+
+try:
+    import dotenv
+    dotenv.load_dotenv()
+except ImportError:
+    pass

cognee/infrastructure/llm/prompts/answer_hotpot_question.txt

@@ -0,0 +1,2 @@
+Answer the question using the provided context. Be as brief as possible.
+Each entry in the context is a paragraph, which is represented as a list with two elements [title, sentences] and sentences is a list of strings.

cognee/infrastructure/llm/prompts/answer_hotpot_using_cognee_search.txt

@@ -0,0 +1,2 @@
+Answer the question using the provided context. Be as brief as possible.
+Each entry in the context is tuple of length 3, representing an edge of a knowledge graph with its two nodes.

cognee/infrastructure/llm/prompts/context_for_question.txt

@@ -0,0 +1,2 @@
+The question is: `{{ question }}`
+And here is the context: `{{ context }}`

evals/deepeval_metrics.py

@@ -0,0 +1,14 @@
+from deepeval.metrics import GEval
+from deepeval.test_case import LLMTestCaseParams
+
+correctness_metric = GEval(
+        name="Correctness",
+        model="gpt-4o-mini",
+        evaluation_params=[
+            LLMTestCaseParams.ACTUAL_OUTPUT,
+            LLMTestCaseParams.EXPECTED_OUTPUT
+        ],
+        evaluation_steps=[
+           "Determine whether the actual output is factually correct based on the expected output."    
+        ]
+    )

evals/llm_as_a_judge.py

@@ -0,0 +1,130 @@
+import argparse
+import asyncio
+import json
+import statistics
+from pathlib import Path
+
+import deepeval.metrics
+import wget
+from deepeval.dataset import EvaluationDataset
+from deepeval.test_case import LLMTestCase
+from tqdm import tqdm
+
+import cognee
+import evals.deepeval_metrics
+from cognee.api.v1.search import SearchType
+from cognee.base_config import get_base_config
+from cognee.infrastructure.llm.get_llm_client import get_llm_client
+from cognee.infrastructure.llm.prompts import read_query_prompt, render_prompt
+
+
+async def answer_without_cognee(instance):
+    args = {
+        "question": instance["question"],
+        "context": instance["context"],
+    }
+    user_prompt = render_prompt("context_for_question.txt", args)
+    system_prompt = read_query_prompt("answer_hotpot_question.txt")
+
+    llm_client = get_llm_client()
+    answer_prediction = await llm_client.acreate_structured_output(
+        text_input=user_prompt,
+        system_prompt=system_prompt,
+        response_model=str,
+    )
+    return answer_prediction
+
+async def answer_with_cognee(instance):
+    await cognee.prune.prune_data()
+    await cognee.prune.prune_system(metadata=True)
+    
+    for (title, sentences) in instance["context"]:
+        await cognee.add("\n".join(sentences), dataset_name = "HotPotQA")
+    
+    await cognee.cognify("HotPotQA")
+
+    search_results = await cognee.search(
+        SearchType.INSIGHTS, query_text=instance["question"]
+    )
+   
+    args = {
+        "question": instance["question"],
+        "context": search_results,
+    }
+    user_prompt = render_prompt("context_for_question.txt", args)
+    system_prompt = read_query_prompt("answer_hotpot_using_cognee_search.txt")
+
+    llm_client = get_llm_client()
+    answer_prediction = await llm_client.acreate_structured_output(
+        text_input=user_prompt,
+        system_prompt=system_prompt,
+        response_model=str,
+    )
+    
+    return answer_prediction
+
+
+async def eval_answers(instances, answers, eval_metric):
+    test_cases = []
+    
+    for instance, answer in zip(instances, answers):
+        test_case = LLMTestCase(
+            input=instance["question"],
+            actual_output=answer,
+            expected_output=instance["answer"]
+        )
+        test_cases.append(test_case)
+    
+    eval_set = EvaluationDataset(test_cases)
+    eval_results = eval_set.evaluate([eval_metric])
+    
+    return eval_results
+
+async def eval_on_hotpotQA(answer_provider, num_samples, eval_metric):
+    base_config = get_base_config()
+    data_root_dir = base_config.data_root_directory
+    
+    if not Path(data_root_dir).exists():
+        Path(data_root_dir).mkdir()
+    
+    filepath = data_root_dir / Path("hotpot_dev_fullwiki_v1.json")
+    if not filepath.exists():
+        url = 'http://curtis.ml.cmu.edu/datasets/hotpot/hotpot_dev_fullwiki_v1.json'
+        wget.download(url, out=data_root_dir)
+    
+    with open(filepath, "r") as file:
+        dataset = json.load(file)
+    
+    instances = dataset if not num_samples else dataset[:num_samples]
+    answers = []
+    for instance in tqdm(instances, desc="Getting answers"):
+        answer = await answer_provider(instance)
+        answers.append(answer)
+    
+    eval_results = await eval_answers(instances, answers, eval_metric)
+    avg_score = statistics.mean([result.metrics_data[0].score for result in eval_results.test_results])
+    
+    return avg_score
+
+if __name__ == "__main__":
+    parser = argparse.ArgumentParser()
+    
+    parser.add_argument("--with_cognee", action="store_true")
+    parser.add_argument("--num_samples", type=int, default=500)
+    parser.add_argument("--metric", type=str, default="correctness_metric")
+    
+    args = parser.parse_args()
+
+    try:
+        metric_cls = getattr(deepeval.metrics, args.metric)
+        metric = metric_cls()
+    except AttributeError:
+        metric = getattr(evals.deepeval_metrics, args.metric)
+    
+    if args.with_cognee:
+        answer_provider = answer_with_cognee
+    else:
+        answer_provider = answer_without_cognee
+    
+    avg_score = asyncio.run(eval_on_hotpotQA(answer_provider, args.num_samples, metric))
+    print(f"Average {args.metric}: {avg_score}")

pyproject.toml

@@ -70,6 +70,7 @@ asyncpg = "0.30.0"
 pgvector = "^0.3.5"
 psycopg2 = {version = "^2.9.10", optional = true}
 llama-index-core = {version = "^0.11.22", optional = true}
+deepeval = {version = "^2.0.1", optional = true}
 
 [tool.poetry.extras]
 filesystem = ["s3fs", "botocore"]
@@ -80,6 +81,8 @@ neo4j = ["neo4j"]
 postgres = ["psycopg2", "pgvector", "asyncpg"]
 notebook = ["ipykernel", "overrides", "ipywidgets", "jupyterlab", "jupyterlab_widgets", "jupyterlab-server", "jupyterlab-git"]
 llama-index = ["llama-index-core"]
+deepeval = ["deepeval"]
+
 
 
 [tool.poetry.group.dev.dependencies]