diff --git a/.github/workflows/test_python_3_10.yml b/.github/workflows/test_python_3_10.yml index dc1594db4..30d266379 100644 --- a/.github/workflows/test_python_3_10.yml +++ b/.github/workflows/test_python_3_10.yml @@ -47,7 +47,7 @@ jobs: installer-parallel: true - name: Install dependencies - run: poetry install --no-interaction + run: poetry install --no-interaction -E docs - name: Run unit tests run: poetry run pytest cognee/tests/unit/ diff --git a/.github/workflows/test_python_3_11.yml b/.github/workflows/test_python_3_11.yml index 0ef9bf910..1bf8b50f0 100644 --- a/.github/workflows/test_python_3_11.yml +++ b/.github/workflows/test_python_3_11.yml @@ -47,7 +47,7 @@ jobs: installer-parallel: true - name: Install dependencies - run: poetry install --no-interaction + run: poetry install --no-interaction -E docs - name: Run unit tests run: poetry run pytest cognee/tests/unit/ diff --git a/.github/workflows/test_python_3_9.yml b/.github/workflows/test_python_3_9.yml index adce159ad..cac4d0cd5 100644 --- a/.github/workflows/test_python_3_9.yml +++ b/.github/workflows/test_python_3_9.yml @@ -47,7 +47,7 @@ jobs: installer-parallel: true - name: Install dependencies - run: poetry install --no-interaction + run: poetry install --no-interaction -E docs - name: Run unit tests run: poetry run pytest cognee/tests/unit/ diff --git a/cognee/modules/data/exceptions/__init__.py b/cognee/modules/data/exceptions/__init__.py new file mode 100644 index 000000000..fa8468c88 --- /dev/null +++ b/cognee/modules/data/exceptions/__init__.py @@ -0,0 +1,9 @@ +""" +Custom exceptions for the Cognee API. + +This module defines a set of exceptions for handling various data errors +""" + +from .exceptions import ( + UnstructuredLibraryImportError, +) \ No newline at end of file diff --git a/cognee/modules/data/exceptions/exceptions.py b/cognee/modules/data/exceptions/exceptions.py new file mode 100644 index 000000000..3b1aac52c --- /dev/null +++ b/cognee/modules/data/exceptions/exceptions.py @@ -0,0 +1,11 @@ +from cognee.exceptions import CogneeApiError +from fastapi import status + +class UnstructuredLibraryImportError(CogneeApiError): + def __init__( + self, + message: str = "Import error. Unstructured library is not installed.", + name: str = "UnstructuredModuleImportError", + status_code=status.HTTP_422_UNPROCESSABLE_ENTITY, + ): + super().__init__(message, name, status_code) \ No newline at end of file diff --git a/cognee/modules/data/processing/document_types/Document.py b/cognee/modules/data/processing/document_types/Document.py index 773fc30c8..45441dcce 100644 --- a/cognee/modules/data/processing/document_types/Document.py +++ b/cognee/modules/data/processing/document_types/Document.py @@ -6,6 +6,7 @@ class Document(DataPoint): name: str raw_data_location: str metadata_id: UUID + mime_type: str def read(self, chunk_size: int) -> str: pass diff --git a/cognee/modules/data/processing/document_types/UnstructuredDocument.py b/cognee/modules/data/processing/document_types/UnstructuredDocument.py new file mode 100644 index 000000000..62632cd08 --- /dev/null +++ b/cognee/modules/data/processing/document_types/UnstructuredDocument.py @@ -0,0 +1,32 @@ +from io import StringIO + +from cognee.modules.chunking.TextChunker import TextChunker +from .Document import Document +from cognee.modules.data.exceptions import UnstructuredLibraryImportError + + +class UnstructuredDocument(Document): + type: str = "unstructured" + + def read(self, chunk_size: int): + def get_text(): + try: + from unstructured.partition.auto import partition + except ModuleNotFoundError: + raise UnstructuredLibraryImportError + + elements = partition(self.raw_data_location, content_type=self.mime_type) + in_memory_file = StringIO("\n\n".join([str(el) for el in elements])) + in_memory_file.seek(0) + + while True: + text = in_memory_file.read(1024) + + if len(text.strip()) == 0: + break + + yield text + + chunker = TextChunker(self, chunk_size = chunk_size, get_text = get_text) + + yield from chunker.read() diff --git a/cognee/modules/data/processing/document_types/__init__.py b/cognee/modules/data/processing/document_types/__init__.py index 9682cc101..2e862f4ba 100644 --- a/cognee/modules/data/processing/document_types/__init__.py +++ b/cognee/modules/data/processing/document_types/__init__.py @@ -3,3 +3,4 @@ from .PdfDocument import PdfDocument from .TextDocument import TextDocument from .ImageDocument import ImageDocument from .AudioDocument import AudioDocument +from .UnstructuredDocument import UnstructuredDocument diff --git a/cognee/tasks/documents/classify_documents.py b/cognee/tasks/documents/classify_documents.py index d007b6888..47beeb917 100644 --- a/cognee/tasks/documents/classify_documents.py +++ b/cognee/tasks/documents/classify_documents.py @@ -5,12 +5,22 @@ from cognee.modules.data.processing.document_types import ( AudioDocument, ImageDocument, TextDocument, + UnstructuredDocument, ) from cognee.modules.data.operations.get_metadata import get_metadata EXTENSION_TO_DOCUMENT_CLASS = { "pdf": PdfDocument, # Text documents "txt": TextDocument, + "docx": UnstructuredDocument, + "doc": UnstructuredDocument, + "odt": UnstructuredDocument, + "xls": UnstructuredDocument, + "xlsx": UnstructuredDocument, + "ppt": UnstructuredDocument, + "pptx": UnstructuredDocument, + "odp": UnstructuredDocument, + "ods": UnstructuredDocument, "png": ImageDocument, # Image documents "dwg": ImageDocument, "xcf": ImageDocument, @@ -48,6 +58,7 @@ async def classify_documents(data_documents: list[Data]) -> list[Document]: title = f"{data_item.name}.{data_item.extension}", raw_data_location = data_item.raw_data_location, name = data_item.name, + mime_type = data_item.mime_type, metadata_id = metadata.id ) documents.append(document) diff --git a/cognee/tests/integration/documents/AudioDocument_test.py b/cognee/tests/integration/documents/AudioDocument_test.py index a35e3892b..da8b85d0b 100644 --- a/cognee/tests/integration/documents/AudioDocument_test.py +++ b/cognee/tests/integration/documents/AudioDocument_test.py @@ -27,7 +27,7 @@ TEST_TEXT = """ def test_AudioDocument(): document = AudioDocument( - id=uuid.uuid4(), name="audio-dummy-test", raw_data_location="", metadata_id=uuid.uuid4() + id=uuid.uuid4(), name="audio-dummy-test", raw_data_location="", metadata_id=uuid.uuid4(), mime_type="", ) with patch.object(AudioDocument, "create_transcript", return_value=TEST_TEXT): for ground_truth, paragraph_data in zip( diff --git a/cognee/tests/integration/documents/ImageDocument_test.py b/cognee/tests/integration/documents/ImageDocument_test.py index 9f5952c40..8a8ee8ef3 100644 --- a/cognee/tests/integration/documents/ImageDocument_test.py +++ b/cognee/tests/integration/documents/ImageDocument_test.py @@ -16,7 +16,7 @@ The commotion has attracted an audience: a murder of crows has gathered in the l def test_ImageDocument(): document = ImageDocument( - id=uuid.uuid4(), name="image-dummy-test", raw_data_location="", metadata_id=uuid.uuid4() + id=uuid.uuid4(), name="image-dummy-test", raw_data_location="", metadata_id=uuid.uuid4(), mime_type="", ) with patch.object(ImageDocument, "transcribe_image", return_value=TEST_TEXT): diff --git a/cognee/tests/integration/documents/PdfDocument_test.py b/cognee/tests/integration/documents/PdfDocument_test.py index fbfe236db..ac57eaf75 100644 --- a/cognee/tests/integration/documents/PdfDocument_test.py +++ b/cognee/tests/integration/documents/PdfDocument_test.py @@ -17,7 +17,8 @@ def test_PdfDocument(): "artificial-intelligence.pdf", ) document = PdfDocument( - id=uuid.uuid4(), name="Test document.pdf", raw_data_location=test_file_path, metadata_id=uuid.uuid4() + id=uuid.uuid4(), name="Test document.pdf", raw_data_location=test_file_path, metadata_id=uuid.uuid4(), + mime_type="", ) for ground_truth, paragraph_data in zip( diff --git a/cognee/tests/integration/documents/TextDocument_test.py b/cognee/tests/integration/documents/TextDocument_test.py index 46adee094..f663418f5 100644 --- a/cognee/tests/integration/documents/TextDocument_test.py +++ b/cognee/tests/integration/documents/TextDocument_test.py @@ -29,7 +29,7 @@ def test_TextDocument(input_file, chunk_size): input_file, ) document = TextDocument( - id=uuid.uuid4(), name=input_file, raw_data_location=test_file_path, metadata_id=uuid.uuid4() + id=uuid.uuid4(), name=input_file, raw_data_location=test_file_path, metadata_id=uuid.uuid4(), mime_type="", ) for ground_truth, paragraph_data in zip( diff --git a/cognee/tests/integration/documents/UnstructuredDocument_test.py b/cognee/tests/integration/documents/UnstructuredDocument_test.py new file mode 100644 index 000000000..418b18810 --- /dev/null +++ b/cognee/tests/integration/documents/UnstructuredDocument_test.py @@ -0,0 +1,80 @@ +import os +import uuid + +from cognee.modules.data.processing.document_types.UnstructuredDocument import UnstructuredDocument + +def test_UnstructuredDocument(): + # Define file paths of test data + pptx_file_path = os.path.join( + os.sep, + *(os.path.dirname(__file__).split(os.sep)[:-2]), + "test_data", + "example.pptx", + ) + + docx_file_path = os.path.join( + os.sep, + *(os.path.dirname(__file__).split(os.sep)[:-2]), + "test_data", + "example.docx", + ) + + csv_file_path = os.path.join( + os.sep, + *(os.path.dirname(__file__).split(os.sep)[:-2]), + "test_data", + "example.csv", + ) + + xlsx_file_path = os.path.join( + os.sep, + *(os.path.dirname(__file__).split(os.sep)[:-2]), + "test_data", + "example.xlsx", + ) + + # Define test documents + pptx_document = UnstructuredDocument( + id=uuid.uuid4(), name="example.pptx", raw_data_location=pptx_file_path, metadata_id=uuid.uuid4(), + mime_type="application/vnd.openxmlformats-officedocument.presentationml.presentation" + ) + + docx_document = UnstructuredDocument( + id=uuid.uuid4(), name="example.docx", raw_data_location=docx_file_path, metadata_id=uuid.uuid4(), + mime_type="application/vnd.openxmlformats-officedocument.wordprocessingml.document" + ) + + csv_document = UnstructuredDocument( + id=uuid.uuid4(), name="example.csv", raw_data_location=csv_file_path, metadata_id=uuid.uuid4(), + mime_type="text/csv" + ) + + xlsx_document = UnstructuredDocument( + id=uuid.uuid4(), name="example.xlsx", raw_data_location=xlsx_file_path, metadata_id=uuid.uuid4(), + mime_type="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet" + ) + + # Test PPTX + for paragraph_data in pptx_document.read(chunk_size=1024): + assert 19 == paragraph_data.word_count, f' 19 != {paragraph_data.word_count = }' + assert 104 == len(paragraph_data.text), f' 104 != {len(paragraph_data.text) = }' + assert 'sentence_cut' == paragraph_data.cut_type, f' sentence_cut != {paragraph_data.cut_type = }' + + # Test DOCX + for paragraph_data in docx_document.read(chunk_size=1024): + assert 16 == paragraph_data.word_count, f' 16 != {paragraph_data.word_count = }' + assert 145 == len(paragraph_data.text), f' 145 != {len(paragraph_data.text) = }' + assert 'sentence_end' == paragraph_data.cut_type, f' sentence_end != {paragraph_data.cut_type = }' + + # TEST CSV + for paragraph_data in csv_document.read(chunk_size=1024): + assert 15 == paragraph_data.word_count, f' 15 != {paragraph_data.word_count = }' + assert 'A A A A A A A A A,A A A A A A,A A' == paragraph_data.text, \ + f'Read text doesn\'t match expected text: {paragraph_data.text}' + assert 'sentence_cut' == paragraph_data.cut_type, f' sentence_cut != {paragraph_data.cut_type = }' + + # Test XLSX + for paragraph_data in xlsx_document.read(chunk_size=1024): + assert 36 == paragraph_data.word_count, f' 36 != {paragraph_data.word_count = }' + assert 171 == len(paragraph_data.text), f' 171 != {len(paragraph_data.text) = }' + assert 'sentence_cut' == paragraph_data.cut_type, f' sentence_cut != {paragraph_data.cut_type = }' diff --git a/cognee/tests/test_data/example.csv b/cognee/tests/test_data/example.csv new file mode 100644 index 000000000..004bbf122 --- /dev/null +++ b/cognee/tests/test_data/example.csv @@ -0,0 +1,3 @@ +A,A,A,A,A +A,A,A,"A,A",A +A,A,A,"A,A",A diff --git a/cognee/tests/test_data/example.docx b/cognee/tests/test_data/example.docx new file mode 100644 index 000000000..81ff7f2d4 Binary files /dev/null and b/cognee/tests/test_data/example.docx differ diff --git a/cognee/tests/test_data/example.pptx b/cognee/tests/test_data/example.pptx new file mode 100644 index 000000000..3e49ae3df Binary files /dev/null and b/cognee/tests/test_data/example.pptx differ diff --git a/cognee/tests/test_data/example.xlsx b/cognee/tests/test_data/example.xlsx new file mode 100644 index 000000000..944533d38 Binary files /dev/null and b/cognee/tests/test_data/example.xlsx differ diff --git a/poetry.lock b/poetry.lock index 8a0326236..dcba97b55 100644 --- a/poetry.lock +++ b/poetry.lock @@ -726,6 +726,17 @@ files = [ [package.dependencies] pycparser = "*" +[[package]] +name = "chardet" +version = "5.2.0" +description = "Universal encoding detector for Python 3" +optional = true +python-versions = ">=3.7" +files = [ + {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"}, + {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"}, +] + [[package]] name = "charset-normalizer" version = "3.4.0" @@ -1213,6 +1224,24 @@ files = [ {file = "decorator-5.1.1.tar.gz", hash = "sha256:637996211036b6385ef91435e4fae22989472f9d571faba8927ba8253acbc330"}, ] +[[package]] +name = "deepdiff" +version = "8.0.1" +description = "Deep Difference and Search of any Python object/data. 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