Prepare for the presentation, add info

cognitive_architecture/config.py

@@ -43,7 +43,7 @@ class Config:
     graph_filename = os.getenv("GRAPH_NAME", "cognee_graph.pkl")
 
     # Model parameters
-    model: str = "gpt-4-1106-preview"
+    model: str = "gpt-4-0125-preview"
     model_endpoint: str = "openai"
     openai_key: Optional[str] = os.getenv("OPENAI_API_KEY")
     openai_temperature: float = float(os.getenv("OPENAI_TEMPERATURE", 0.0))

cognitive_architecture/infrastructure/databases/graph/get_graph_client.py

@@ -3,23 +3,20 @@ from typing import Type
 from cognitive_architecture.config import Config
 from .graph_db_interface import GraphDBInterface
 from .networkx.adapter import NetworXAdapter
-# Assuming Neo4jAdapter is defined somewhere
 # from .neo4j.adapter import Neo4jAdapter
 from enum import Enum, auto
-
+from cognitive_architecture.shared.data_models import GraphDBType
 
 config = Config()
 config.load()
 
-class GraphDBType(Enum):
-    NETWORKX = auto()
-    NEO4J = auto()
-def get_graph_client(graph_type: GraphDBType, graph_filename: str) -> Type[GraphDBInterface]:
+
+def get_graph_client(graph_type: GraphDBType, graph_filename: str=None) -> GraphDBInterface :
     """Factory function to get the appropriate graph client based on the graph type."""
-    if graph_filename is not None:
-        config.graph_filename = graph_filename
+    if graph_filename is None:
+        graph_filename= config.graph_filename
     if graph_type == GraphDBType.NETWORKX:
-        return NetworXAdapter(filename = config.graph_filename)  # Adjust as needed for NetworkX adapter configuration
+        return  NetworXAdapter(filename = graph_filename)
     elif graph_type == GraphDBType.NEO4J:
         # return Neo4jAdapter(config.neo4j_config)  # Uncomment and adjust as needed for Neo4j adapter configuration
         raise NotImplementedError("Neo4j adapter is not implemented yet.")

cognitive_architecture/infrastructure/databases/graph/graph_db_interface.py

@@ -7,33 +7,56 @@ class GraphDBInterface(Protocol):
     """ Save and Load Graphs """
 
     @abstractmethod
-    async def save_graph(
+    async def graph(self):
+        raise NotImplementedError
+
+    @abstractmethod
+    async def save_graph_to_file(
         self,
-        path: str
+        file_path: str = None
     ): raise NotImplementedError
 
     @abstractmethod
-    async def load_graph(
+    async def load_graph_from_file(
         self,
-        path: str
+        file_path: str = None
     ): raise NotImplementedError
 
     @abstractmethod
-    async def delete_graph(
+    async def delete_graph_from_file(
         self,
-        path: str
+        path: str = None
     ): raise NotImplementedError
 
     """ CRUD operations on graph nodes """
 
     @abstractmethod
-    async def create(self,
-                     user_id:str,
-                     custom_user_properties:str,
-                     required_layers:list,
-                     default_fields:dict
+
+    async def add_node(
+        self,
+        id: str,
+        **kwargs
     ): raise NotImplementedError
 
+    @abstractmethod
+    async def delete_node(
+        self,
+        id: str
+    ): raise NotImplementedError
+
+
+    """ CRUD operations on graph edges """
+
+
+    @abstractmethod
+    async def add_edge(
+        self,
+        from_node: str,
+        to_node: str,
+        **kwargs
+    ): raise NotImplementedError
+
+
     # @abstractmethod
     # async def create_vector_index(
     #     self,
@@ -48,13 +71,13 @@ class GraphDBInterface(Protocol):
     #     vector_index_config: object
     # ): raise NotImplementedError
 
-    """ Data points """
-    @abstractmethod
-    async def create_data_points(
-        self,
-        collection_name: str,
-        data_points: List[any]
-    ): raise NotImplementedError
+    # """ Data points """
+    # @abstractmethod
+    # async def create_data_points(
+    #     self,
+    #     collection_name: str,
+    #     data_points: List[any]
+    # ): raise NotImplementedError
 
     # @abstractmethod
     # async def get_data_point(

cognitive_architecture/infrastructure/databases/graph/networkx/adapter.py

@@ -1,91 +1,177 @@
+"""Adapter for NetworkX graph database."""
+
+import json
+import os
 import pickle
 from datetime import datetime
+from typing import Optional, Dict, Any
+import aiofiles.os
 import aiofiles
 import networkx as nx
 from cognitive_architecture.infrastructure.databases.graph.graph_db_interface import GraphDBInterface
 import logging
 
 class NetworXAdapter(GraphDBInterface):
+    _instance = None  # Class variable to store the singleton instance
+
+    def __new__(cls, *args, **kwargs):
+        if cls._instance is None:
+            cls._instance = super(NetworXAdapter, cls).__new__(cls)
+        return cls._instance
     def __init__(self, filename="cognee_graph.pkl"):
         self.filename = filename
         self.graph = nx.MultiDiGraph()
 
+    async def graph(self):
+        return self.graph
+        # G = await client.load_graph_from_file()
+        # if G is None:
+        #     G = client.graph  # Directly access the graph attribute without calling it
+        # return G
 
-    async def save_graph(self, path: str):
-        """Asynchronously save the graph to a file."""
-        if path is not None:
-            path = self.filename
+
+    async def add_node(self, id: str, **kwargs) -> None:
+        """Asynchronously add a node to the graph if it doesn't already exist, with given properties."""
+        if not self.graph.has_node(id):
+            self.graph.add_node(id, **kwargs)
+            await self.save_graph_to_file(self.filename)
+
+    async def add_edge(self, from_node: str, to_node: str, **kwargs ) -> None:
+        """Asynchronously add an edge between two nodes with optional properties."""
+        # properties = properties or {}
+        self.graph.add_edge(from_node, to_node, **kwargs)
+        await self.save_graph_to_file(self.filename)
+
+    async def delete_node(self, id: str) -> None:
+        """Asynchronously delete a node from the graph if it exists."""
+        if self.graph.has_node(id):
+            self.graph.remove_node(id)
+            await self.save_graph_to_file(self.filename)
+
+
+    async def save_graph_to_file(self, file_path: str=None) -> None:
+        """Asynchronously save the graph to a file in JSON format."""
+        if not file_path:
+            file_path = self.filename
+        graph_data = nx.readwrite.json_graph.node_link_data(self.graph)
+        async with aiofiles.open(file_path, 'w') as file:
+            await file.write(json.dumps(graph_data))
+
+    async def load_graph_from_file(self, file_path: str = None):
+        """Asynchronously load the graph from a file in JSON format."""
+        if not file_path:
+            file_path = self.filename
         try:
-            async with aiofiles.open(path, "wb") as f:
-                await f.write(pickle.dumps(self.graph))
-            logging.info("Graph saved successfully.")
+            if os.path.exists(file_path):
+                async with aiofiles.open(file_path, 'r') as file:
+                    graph_data = json.loads(await file.read())
+                    self.graph = nx.readwrite.json_graph.node_link_graph(graph_data)
+                    return self.graph
+            else:
+                # Log that the file does not exist and an empty graph is initialized
+                logging.warning(f"File {file_path} not found. Initializing an empty graph.")
+                self.graph = nx.MultiDiGraph()  # Use MultiDiGraph to keep it consistent with __init__
+                return self.graph
         except Exception as e:
-            logging.error(f"Failed to save graph: {e}")
+            logging.error(f"Failed to load graph from {file_path}: {e}")
+            # Consider initializing an empty graph in case of error
+            self.graph = nx.MultiDiGraph()
+            return self.graph
 
-    async def load_graph(self, path: str):
-        if path is not None:
-            path = self.filename
+    async def delete_graph_from_file(self, path: str = None):
+        """Asynchronously delete the graph file from the filesystem."""
+        if path is None:
+            path = self.filename  # Assuming self.filename is defined elsewhere and holds the default graph file path
         try:
-            async with aiofiles.open(path, "rb") as f:
-                data = await f.read()
-                self.graph = pickle.loads(data)
-            logging.info("Graph loaded successfully.")
-        except Exception as e:
-            logging.error(f"Failed to load graph: {e}")
-
-    async def delete_graph(self, path: str):
-        if path is not None:
-            path = self.filename
-        try:
-            async with aiofiles.open(path, "wb") as f:
-                await f.write(pickle.dumps(self.graph))
+            await aiofiles.os.remove(path)  # Asynchronously remove the file
             logging.info("Graph deleted successfully.")
         except Exception as e:
             logging.error(f"Failed to delete graph: {e}")
 
-    async def create(self, user_id, custom_user_properties=None, required_layers=None, default_fields=None):
-        """Asynchronously create or update a user content graph based on given parameters."""
-        # Assume required_layers is a dictionary-like object; use more robust validation in production
-        category_name = required_layers['name']
-        subgroup_names = [subgroup['name'] for subgroup in required_layers['cognitive_subgroups']]
-
-        # Construct the additional_categories structure
-        additional_categories = {category_name: subgroup_names}
-
-        # Define default fields for all nodes if not provided
-        if default_fields is None:
-            default_fields = {
-                'created_at': datetime.now().strftime("%Y-%m-%d %H:%M:%S"),
-                'updated_at': datetime.now().strftime("%Y-%m-%d %H:%M:%S")
-            }
-
-        # Merge custom user properties with default fields; custom properties take precedence
-        user_properties = {**default_fields, **(custom_user_properties or {})}
-
-        # Default content categories and update with any additional categories provided
-        content_categories = {
-            "Temporal": ["Historical events", "Schedules and timelines"],
-            "Positional": ["Geographical locations", "Spatial data"],
-            "Propositions": ["Hypotheses and theories", "Claims and arguments"],
-            "Personalization": ["User preferences", "User information"]
-        }
-        content_categories.update(additional_categories)
-
-        # Ensure the user node exists with properties
-        self.graph.add_node(user_id, **user_properties, exist=True)
-
-        # Add or update content category nodes and their edges
-        for category, subclasses in content_categories.items():
-            category_properties = {**default_fields, 'type': 'category'}
-            self.graph.add_node(category, **category_properties, exist=True)
-            self.graph.add_edge(user_id, category, relationship='created')
-
-            # Add or update subclass nodes and their edges
-            for subclass in subclasses:
-                subclass_node_id = f"{category}:{subclass}"
-                subclass_properties = {**default_fields, 'type': 'subclass', 'content': subclass}
-                self.graph.add_node(subclass_node_id, **subclass_properties, exist=True)
-                self.graph.add_edge(category, subclass_node_id, relationship='includes')
-
-        # Save the graph asynchronously after modifications
-        await self.save_graph()
+    # async def create(self, user_id, custom_user_properties=None, required_layers=None, default_fields=None, existing_graph=None):
+    #     """Asynchronously create or update a user content graph based on given parameters."""
+    #     # Assume required_layers is a dictionary-like object; use more robust validation in production
+    #     category_name = required_layers['context_name']
+    #     subgroup_names = [required_layers['layer_name']]
+    #
+    #     # Construct the additional_categories structure
+    #     additional_categories = {category_name: subgroup_names}
+    #
+    #     # Define default fields for all nodes if not provided
+    #     if default_fields is None:
+    #         default_fields = {
+    #             'created_at': datetime.now().strftime("%Y-%m-%d %H:%M:%S"),
+    #             'updated_at': datetime.now().strftime("%Y-%m-%d %H:%M:%S")
+    #         }
+    #
+    #     # Merge custom user properties with default fields; custom properties take precedence
+    #     user_properties = {**default_fields, **(custom_user_properties or {})}
+    #
+    #     # Default content categories and update with any additional categories provided
+    #     content_categories = {
+    #         "Temporal": ["Historical events", "Schedules and timelines"],
+    #         "Positional": ["Geographical locations", "Spatial data"],
+    #         "Propositions": ["Hypotheses and theories", "Claims and arguments"],
+    #         "Personalization": ["User preferences", "User information"]
+    #     }
+    #
+    #     content_categories = {
+    #         "Temporal": ["Historical events", "Schedules and timelines"],
+    #         "Positional": ["Geographical locations", "Spatial data"],
+    #         "Propositions": ["Hypotheses and theories", "Claims and arguments"],
+    #         "Personalization": ["User preferences", "User information"]
+    #     }
+    #
+    #     # Update content categories with any additional categories provided
+    #     if additional_categories:
+    #         content_categories.update(additional_categories)
+    #
+    #     G = existing_graph if existing_graph else self.graph
+    #
+    #     # Check if the user node already exists, if not, add the user node with properties
+    #     if not G.has_node(user_id):
+    #         G.add_node(user_id, **user_properties)
+    #
+    #     # Add or update content category nodes and their edges
+    #     for category, subclasses in content_categories.items():
+    #         category_properties = {**default_fields, 'type': 'category'}
+    #
+    #         # Add or update the category node
+    #         if not G.has_node(category):
+    #             G.add_node(category, **category_properties)
+    #             G.add_edge(user_id, category, relationship='created')
+    #
+    #         # Add or update subclass nodes and their edges
+    #         for subclass in subclasses:
+    #             # Using both category and subclass names to ensure uniqueness within categories
+    #             subclass_node_id = f"{category}:{subclass}"
+    #
+    #             # Check if subclass node exists before adding, based on node content
+    #             if not any(subclass == data.get('content') for _, data in G.nodes(data=True)):
+    #                 subclass_properties = {**default_fields, 'type': 'subclass', 'content': subclass}
+    #                 G.add_node(subclass_node_id, **subclass_properties)
+    #                 G.add_edge(category, subclass_node_id, relationship='includes')
+    #
+    #     return G
+        # content_categories.update(additional_categories)
+        #
+        # # Ensure the user node exists with properties
+        # self.graph.add_node(user_id, **user_properties, exist=True)
+        #
+        # # Add or update content category nodes and their edges
+        # for category, subclasses in content_categories.items():
+        #     category_properties = {**default_fields, 'type': 'category'}
+        #     self.graph.add_node(category, **category_properties, exist=True)
+        #     self.graph.add_edge(user_id, category, relationship='created')
+        #
+        #     # Add or update subclass nodes and their edges
+        #     for subclass in subclasses:
+        #         subclass_node_id = f"{category}:{subclass}"
+        #         subclass_properties = {**default_fields, 'type': 'subclass', 'content': subclass}
+        #         self.graph.add_node(subclass_node_id, **subclass_properties, exist=True)
+        #         self.graph.add_edge(category, subclass_node_id, relationship='includes')
+        #
+        # # Save the graph asynchronously after modifications
+        # # await self.save_graph()
+        #
+        # return self.graph

cognitive_architecture/modules/cognify/graph/create_semantic_graph.py

@@ -1,17 +1,146 @@
-from cognitive_architecture.infrastructure.graph.get_graph_client import get_graph_client
+""" This module is responsible for creating a semantic graph """
+from datetime import datetime
+from enum import Enum, auto
+from typing import Type, Optional, Any
+from pydantic import BaseModel
+from cognitive_architecture.infrastructure.databases.graph.get_graph_client import get_graph_client
+from cognitive_architecture.shared.data_models import GraphDBType, DefaultGraphModel, Document, DocumentType, Category, Relationship, UserProperties, UserLocation
 
 
 
 
-def create_semantic_graph(
-    text_input: str,
-    filename: str,
-    context,
-    response_model: Type[BaseModel]
-) -> KnowledgeGraph:
-    graph_type = GraphDBType.NEO4J
+async def generate_node_id(instance: BaseModel) -> str:
+    for field in ['id', 'doc_id', 'location_id', 'type_id']:
+        if hasattr(instance, field):
+            return f"{instance.__class__.__name__}:{getattr(instance, field)}"
+    return f"{instance.__class__.__name__}:default"
+async def add_node_and_edge(client, parent_id: Optional[str], node_id: str, node_data: dict, relationship_data: dict):
+    await client.add_node(node_id, **node_data)  # Add the current node with its data
+    if parent_id:
+        # Add an edge between the parent node and the current node with the correct relationship data
+        await client.add_edge(parent_id, node_id, **relationship_data)
+
+
+async def process_attribute(G, parent_id: Optional[str], attribute: str, value: Any):
+    if isinstance(value, BaseModel):
+        node_id = await generate_node_id(value)
+        node_data = value.dict(exclude={'default_relationship'})
+        # Use the specified default relationship for the edge between the parent node and the current node
+        relationship_data = value.default_relationship.dict() if hasattr(value, 'default_relationship') else {}
+        await add_node_and_edge(G, parent_id, node_id, node_data, relationship_data)
+
+        # Recursively process nested attributes to ensure all nodes and relationships are added to the graph
+        for sub_attr, sub_val in value.__dict__.items():  # Access attributes and their values directly
+            await process_attribute(G, node_id, sub_attr, sub_val)
+
+    elif isinstance(value, list) and all(isinstance(item, BaseModel) for item in value):
+        # For lists of BaseModel instances, process each item in the list
+        for item in value:
+            await process_attribute(G, parent_id, attribute, item)
+
+async def create_dynamic(graph_model, client) :
+    await client.load_graph_from_file()
+    root_id = await generate_node_id(graph_model)
+    node_data = graph_model.dict(exclude={'default_relationship', 'id'})
+    print(node_data)
+    await client.add_node(root_id, **node_data)
+
+    for attribute_name, attribute_value in graph_model:
+        await process_attribute(client, root_id, attribute_name, attribute_value)
+
+    return client
+
+async def create_semantic_graph(
+):
+    graph_type = GraphDBType.NETWORKX
 
     # Call the get_graph_client function with the selected graph type
     graph_client = get_graph_client(graph_type)
 
-GraphDBInterface
+    print(graph_client)
+
+    await graph_client.load_graph_from_file()
+    #
+    #
+    #
+    # b = await graph_client.add_node("23ds",     {
+    #     'username': 'exampleUser',
+    #     'email': 'user@example.com'
+    # })
+    #
+    # await graph_client.save_graph_to_file(b)
+    graph_model_instance = DefaultGraphModel(
+        id="user123",
+        documents=[
+            Document(
+                doc_id="doc1",
+                title="Document 1",
+                summary="Summary of Document 1",
+                content_id="content_id_for_doc1",  # Assuming external content storage ID
+                doc_type=DocumentType(type_id="PDF", description="Portable Document Format"),
+                categories=[
+                    Category(category_id="finance", name="Finance",
+                             default_relationship=Relationship(type="belongs_to")),
+                    Category(category_id="tech", name="Technology",
+                             default_relationship=Relationship(type="belongs_to"))
+                ],
+                default_relationship=Relationship(type='has_document')
+            ),
+            Document(
+                doc_id="doc2",
+                title="Document 2",
+                summary="Summary of Document 2",
+                content_id="content_id_for_doc2",
+                doc_type=DocumentType(type_id="TXT", description="Text File"),
+                categories=[
+                    Category(category_id="health", name="Health", default_relationship=Relationship(type="belongs_to")),
+                    Category(category_id="wellness", name="Wellness",
+                             default_relationship=Relationship(type="belongs_to"))
+                ],
+                default_relationship=Relationship(type='has_document')
+            )
+        ],
+        user_properties=UserProperties(
+            custom_properties={"age": "30"},
+            location=UserLocation(location_id="ny", description="New York",
+                                  default_relationship=Relationship(type='located_in'))
+        ),
+        default_fields={
+            'created_at': datetime.now().strftime("%Y-%m-%d %H:%M:%S"),
+            'updated_at': datetime.now().strftime("%Y-%m-%d %H:%M:%S")
+        }
+    )
+
+    G = await create_dynamic(graph_model_instance, graph_client)
+
+    # print("Nodes and their data:")
+    # for node, data in G.graph.nodes(data=True):
+    #     print(node, data)
+    #
+    # # Print edges with their data
+    # print("\nEdges and their data:")
+    # for source, target, data in G.graph.edges(data=True):
+    #     print(f"{source} -> {target} {data}")
+    # print(G)
+
+
+
+
+
+
+
+
+
+
+    # return await graph_client.create( user_id = user_id, custom_user_properties=custom_user_properties, required_layers=required_layers, default_fields=default_fields, existing_graph=existing_graph)
+
+
+if __name__ == "__main__":
+    import asyncio
+
+    user_id = 'user123'
+    custom_user_properties = {
+        'username': 'exampleUser',
+        'email': 'user@example.com'
+    }
+    asyncio.run(create_semantic_graph())

cognitive_architecture/modules/cognify/llm/classify_content.py

@@ -2,7 +2,7 @@
 from pydantic import BaseModel
 from typing import Type
 from cognitive_architecture.infrastructure.llm.get_llm_client import get_llm_client
-from cognitive_architecture.shared.data_models import ContentPrediction
+from cognitive_architecture.shared.data_models import DefaultContentPrediction
 from cognitive_architecture.utils import read_query_prompt
 
 async def classify_into_categories(text_input: str, system_prompt_path:str, response_model: Type[BaseModel]):

cognitive_architecture/modules/cognify/llm/content_to_cog_layers.py

@@ -2,7 +2,7 @@
 from typing import Type
 from pydantic import BaseModel
 from cognitive_architecture.infrastructure.llm.get_llm_client import get_llm_client
-from cognitive_architecture.shared.data_models import CognitiveLayer
+from cognitive_architecture.shared.data_models import DefaultCognitiveLayer
 from cognitive_architecture.utils import async_render_template
 
 async def content_to_cog_layers(filename: str,context, response_model: Type[BaseModel]):

cognitive_architecture/modules/cognify/llm/content_to_propositions.py

@@ -1,4 +1,5 @@
 """ This module is responsible for converting content to cognitive layers. """
+import json
 from typing import Type
 from pydantic import BaseModel
 from cognitive_architecture.infrastructure.llm.get_llm_client import get_llm_client
@@ -10,7 +11,13 @@ async def generate_graph(text_input:str, filename: str,context, response_model:
     llm_client = get_llm_client()
 
     formatted_text_input = await async_render_template(filename, context)
-    return await llm_client.acreate_structured_output(text_input,formatted_text_input, response_model)
+    output = await llm_client.acreate_structured_output(text_input, formatted_text_input, response_model)
+
+
+    context_key = json.dumps(context, sort_keys=True)
+
+    # Returning a dictionary with context as the key and the awaited output as its value
+    return {context_key: output}
 
 
 if __name__ == "__main__":

cognitive_architecture/shared/data_models.py

@@ -1,6 +1,6 @@
 """Data models for the cognitive architecture."""
-from enum import Enum
-from typing import Optional, List, Union
+from enum import Enum, auto
+from typing import Optional, List, Union, Dict, Any
 from pydantic import BaseModel, Field
 
 
@@ -161,7 +161,7 @@ class ProceduralContent(ContentType):
     type:str = "PROCEDURAL"
     subclass: List[ProceduralSubclass]
 
-class ContentPrediction(BaseModel):
+class DefaultContentPrediction(BaseModel):
     """Class for a single class label prediction."""
 
     label: Union[TextContent, AudioContent, ImageContent, VideoContent, MultimediaContent, Model3DContent, ProceduralContent]
@@ -174,8 +174,53 @@ class CognitiveLayerSubgroup(BaseModel):
     description: str
 
 
-class CognitiveLayer(BaseModel):
+class DefaultCognitiveLayer(BaseModel):
     """Cognitive  layer"""
     category_name:str
     cognitive_layers: List[CognitiveLayerSubgroup] = Field(..., default_factory=list)
 
+
+class GraphDBType(Enum):
+    NETWORKX = auto()
+    NEO4J = auto()
+
+
+# Models for representing different entities
+class Relationship(BaseModel):
+    type: str
+    properties: Optional[Dict[str, Any]] = None
+
+class DocumentType(BaseModel):
+    type_id: str
+    description: str
+    default_relationship: Relationship = Relationship(type='is_type')
+
+class Category(BaseModel):
+    category_id: str
+    name: str
+    default_relationship: Relationship = Relationship(type='categorized_as')
+
+class Document(BaseModel):
+    doc_id: str
+    title: str
+    summary: Optional[str] = None
+    content_id: Optional[str] = None
+    doc_type: Optional[DocumentType] = None
+    categories: List[Category] = []
+    default_relationship: Relationship = Relationship(type='has_document')
+
+class UserLocation(BaseModel):
+    location_id: str
+    description: str
+    default_relationship: Relationship = Relationship(type='located_in')
+
+class UserProperties(BaseModel):
+    custom_properties: Optional[Dict[str, Any]] = None
+    location: Optional[UserLocation] = None
+
+class DefaultGraphModel(BaseModel):
+    id: str
+    user_properties: UserProperties = UserProperties()
+    documents: List[Document] = []
+    default_fields: Optional[Dict[str, Any]] = {}
+