Fix low level pipeline (#1203)

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## Description
<!-- Provide a clear description of the changes in this PR -->

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.

cognee/modules/pipelines/operations/run_tasks.py

@@ -2,7 +2,7 @@ import os
 
 import asyncio
 from uuid import UUID
-from typing import Any
+from typing import Any, List
 from functools import wraps
 from sqlalchemy import select
 
@@ -60,9 +60,9 @@ def override_run_tasks(new_gen):
 
 @override_run_tasks(run_tasks_distributed)
 async def run_tasks(
-    tasks: list[Task],
+    tasks: List[Task],
     dataset_id: UUID,
-    data: Any = None,
+    data: List[Any] = None,
     user: User = None,
     pipeline_name: str = "unknown_pipeline",
     context: dict = None,

cognee/tasks/storage/index_data_points.py

@@ -45,7 +45,7 @@ async def index_data_points(data_points: list[DataPoint]):
         index_name = index_name_and_field[:first_occurence]
         field_name = index_name_and_field[first_occurence + 1 :]
         try:
-            # In case the ammount if indexable points is too large we need to send them in batches
+            # In case the amount of indexable points is too large we need to send them in batches
             batch_size = 100
             for i in range(0, len(indexable_points), batch_size):
                 batch = indexable_points[i : i + batch_size]

examples/low_level/pipeline.py

@@ -1,69 +1,77 @@
 import os
 import json
 import asyncio
+from typing import List, Any
 from cognee import prune
 from cognee import visualize_graph
 from cognee.low_level import setup, DataPoint
+from cognee.modules.data.methods import load_or_create_datasets
+from cognee.modules.users.methods import get_default_user
 from cognee.pipelines import run_tasks, Task
 from cognee.tasks.storage import add_data_points
 
 
 class Person(DataPoint):
     name: str
+    # Metadata "index_fields" specifies which DataPoint fields should be embedded for vector search
+    metadata: dict = {"index_fields": ["name"]}
 
 
 class Department(DataPoint):
     name: str
     employees: list[Person]
+    # Metadata "index_fields" specifies which DataPoint fields should be embedded for vector search
+    metadata: dict = {"index_fields": ["name"]}
 
 
 class CompanyType(DataPoint):
     name: str = "Company"
+    # Metadata "index_fields" specifies which DataPoint fields should be embedded for vector search
+    metadata: dict = {"index_fields": ["name"]}
 
 
 class Company(DataPoint):
     name: str
     departments: list[Department]
     is_type: CompanyType
+    # Metadata "index_fields" specifies which DataPoint fields should be embedded for vector search
+    metadata: dict = {"index_fields": ["name"]}
 
 
-def ingest_files():
-    companies_file_path = os.path.join(os.path.dirname(__file__), "companies.json")
-    companies = json.loads(open(companies_file_path, "r").read())
-
-    people_file_path = os.path.join(os.path.dirname(__file__), "people.json")
-    people = json.loads(open(people_file_path, "r").read())
-
+def ingest_files(data: List[Any]):
     people_data_points = {}
     departments_data_points = {}
-
-    for person in people:
-        new_person = Person(name=person["name"])
-        people_data_points[person["name"]] = new_person
-
-        if person["department"] not in departments_data_points:
-            departments_data_points[person["department"]] = Department(
-                name=person["department"], employees=[new_person]
-            )
-        else:
-            departments_data_points[person["department"]].employees.append(new_person)
-
     companies_data_points = {}
 
-    # Create a single CompanyType node, so we connect all companies to it.
-    companyType = CompanyType()
+    for data_item in data:
+        people = data_item["people"]
+        companies = data_item["companies"]
 
-    for company in companies:
-        new_company = Company(name=company["name"], departments=[], is_type=companyType)
-        companies_data_points[company["name"]] = new_company
+        for person in people:
+            new_person = Person(name=person["name"])
+            people_data_points[person["name"]] = new_person
 
-        for department_name in company["departments"]:
-            if department_name not in departments_data_points:
-                departments_data_points[department_name] = Department(
-                    name=department_name, employees=[]
+            if person["department"] not in departments_data_points:
+                departments_data_points[person["department"]] = Department(
+                    name=person["department"], employees=[new_person]
                 )
+            else:
+                departments_data_points[person["department"]].employees.append(new_person)
 
-            new_company.departments.append(departments_data_points[department_name])
+        # Create a single CompanyType node, so we connect all companies to it.
+        companyType = CompanyType()
+
+        for company in companies:
+            new_company = Company(name=company["name"], departments=[], is_type=companyType)
+            companies_data_points[company["name"]] = new_company
+
+            for department_name in company["departments"]:
+                if department_name not in departments_data_points:
+                    departments_data_points[department_name] = Department(
+                        name=department_name, employees=[]
+                    )
+
+                new_company.departments.append(departments_data_points[department_name])
 
     return companies_data_points.values()
 
@@ -72,9 +80,30 @@ async def main():
     await prune.prune_data()
     await prune.prune_system(metadata=True)
 
+    # Create relational database tables
     await setup()
 
-    pipeline = run_tasks([Task(ingest_files), Task(add_data_points)])
+    # If no user is provided use default user
+    user = await get_default_user()
+
+    # Create dataset object to keep track of pipeline status
+    datasets = await load_or_create_datasets(["test_dataset"], [], user)
+
+    # Prepare data for pipeline
+    companies_file_path = os.path.join(os.path.dirname(__file__), "companies.json")
+    companies = json.loads(open(companies_file_path, "r").read())
+    people_file_path = os.path.join(os.path.dirname(__file__), "people.json")
+    people = json.loads(open(people_file_path, "r").read())
+
+    # Run tasks expects a list of data even if it is just one document
+    data = [{"companies": companies, "people": people}]
+
+    pipeline = run_tasks(
+        [Task(ingest_files), Task(add_data_points)],
+        dataset_id=datasets[0].id,
+        data=data,
+        incremental_loading=False,
+    )
 
     async for status in pipeline:
         print(status)