diff --git a/.github/workflows/docker_compose.yml b/.github/workflows/docker_compose.yml index bba26cd74..b66330325 100644 --- a/.github/workflows/docker_compose.yml +++ b/.github/workflows/docker_compose.yml @@ -17,28 +17,22 @@ jobs: uses: actions/checkout@v2 - name: Set up Docker Buildx - uses: docker/setup-buildx-action@v1 + uses: docker/setup-buildx-action@v3 - name: Build Docker images run: | - docker-compose -f docker-compose.yml build + docker compose -f docker-compose.yml build - name: Run Docker Compose run: | - docker-compose -f docker-compose.yml up -d + docker compose -f docker-compose.yml up -d - name: Wait for services to be ready run: | # Add any necessary health checks or wait commands sleep 30 - # - name: Run tests - # run: | - # docker-compose -f docker-compose.yml run --rm - # # Replace with the name of the service running the tests - # # Replace with the actual command to run your tests - - name: Shut down Docker Compose if: always() run: | - docker-compose -f docker-compose.yml down + docker compose -f docker-compose.yml down diff --git a/.github/workflows/test_common.yml b/.github/workflows/test_common.yml index 638536f8c..b28fd977a 100644 --- a/.github/workflows/test_common.yml +++ b/.github/workflows/test_common.yml @@ -18,6 +18,30 @@ jobs: name: docs changes uses: ./.github/workflows/get_docs_changes.yml + setup_docker: + name: Set up Docker Buildx + runs-on: ${{ matrix.os }} + strategy: + fail-fast: false + matrix: + # os: ["ubuntu-latest", "macos-latest"] + os: ["ubuntu-latest"] + steps: + # - name: Install Docker + # run: | + # HOMEBREW_NO_AUTO_UPDATE=1 brew install --cask docker + # sudo /Applications/Docker.app/Contents/MacOS/Docker --unattended --install-privileged-components + # open -a /Applications/Docker.app --args --unattended --accept-license + # echo "We are waiting for Docker to be up and running. It can take over 2 minutes..." + # while ! /Applications/Docker.app/Contents/Resources/bin/docker info &>/dev/null; do sleep 1; done + # if: runner.os == 'macOS' + + # - name: Set up QEMU + # uses: docker/setup-qemu-action@v3 + + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + run_common: name: test needs: get_docs_changes @@ -25,7 +49,7 @@ jobs: strategy: fail-fast: false matrix: - os: ["ubuntu-latest", "macos-latest"] #, "windows-latest" + os: ["ubuntu-latest"] #, "windows-latest", "macos-latest" python-version: ["3.11.x"] # Test all python versions on ubuntu only include: @@ -40,6 +64,18 @@ jobs: run: shell: bash + services: + postgres: + image: postgres:latest + env: + POSTGRES_USER: cognee + POSTGRES_PASSWORD: cognee + POSTGRES_DB: cognee_db + volumes: + - postgres_data:/var/lib/postgresql/data + ports: + - 5432:5432 + runs-on: ${{ matrix.os }} steps: @@ -79,6 +115,12 @@ jobs: mkdir .cognee_system echo $(pwd)/.cognee_system + - name: Wait for PostgreSQL to be ready + run: | + echo "Waiting for PostgreSQL to be ready..." + until pg_isready -h localhost -p 5432 -U cognee; do + sleep 1 + done - name: Run tests run: poetry run pytest tests/ @@ -88,6 +130,15 @@ jobs: OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }} LLM_API_KEY: ${{ secrets.OPENAI_API_KEY }} ENV: 'dev' + POSTGRES_USER: cognee + POSTGRES_PASSWORD: cognee + POSTGRES_DB: cognee_db + POSTGRES_HOST: localhost + POSTGRES_PORT: 5432 + DESTINATION__POSTGRES__CREDENTIALS__HOST: 127.0.0.1 + DESTINATION__POSTGRES__CREDENTIALS__USERNAME: cognee + DESTINATION__POSTGRES__CREDENTIALS__PASSWORD: cognee + DESTINATION__POSTGRES__CREDENTIALS__DATABASE: cognee_db run: poetry run python ./cognee/tests/test_library.py - name: Clean up disk space diff --git a/.github/workflows/test_neo4j.yml b/.github/workflows/test_neo4j.yml index fa6e30e27..c2d04a467 100644 --- a/.github/workflows/test_neo4j.yml +++ b/.github/workflows/test_neo4j.yml @@ -18,16 +18,35 @@ jobs: name: docs changes uses: ./.github/workflows/get_docs_changes.yml + setup_docker: + name: Set up Docker Buildx + runs-on: ubuntu-latest + steps: + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + run_neo4j_integration_test: name: test needs: get_docs_changes if: needs.get_docs_changes.outputs.changes_outside_docs == 'true' - runs-on: macos-latest + runs-on: ubuntu-latest defaults: run: shell: bash + services: + postgres: + image: postgres:latest + env: + POSTGRES_USER: cognee + POSTGRES_PASSWORD: cognee + POSTGRES_DB: cognee_db + volumes: + - postgres_data:/var/lib/postgresql/data + ports: + - 5432:5432 + steps: - name: Check out uses: actions/checkout@v2 @@ -52,6 +71,13 @@ jobs: mkdir .cognee_system echo $(pwd)/.cognee_system + - name: Wait for PostgreSQL to be ready + run: | + echo "Waiting for PostgreSQL to be ready..." + until pg_isready -h localhost -p 5432 -U cognee; do + sleep 1 + done + - name: Run default Neo4j env: OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }} @@ -60,4 +86,13 @@ jobs: GRAPH_DATABASE_PASSWORD: ${{ secrets.NEO4J_API_KEY }} GRAPH_DATABASE_USERNAME: "neo4j" ENV: 'dev' + POSTGRES_USER: cognee + POSTGRES_PASSWORD: cognee + POSTGRES_DB: cognee_db + POSTGRES_HOST: localhost + POSTGRES_PORT: 5432 + DESTINATION__POSTGRES__CREDENTIALS__HOST: 127.0.0.1 + DESTINATION__POSTGRES__CREDENTIALS__USERNAME: cognee + DESTINATION__POSTGRES__CREDENTIALS__PASSWORD: cognee + DESTINATION__POSTGRES__CREDENTIALS__DATABASE: cognee_db run: poetry run python ./cognee/tests/test_neo4j.py diff --git a/.github/workflows/test_qdrant.yml b/.github/workflows/test_qdrant.yml index d9c5444d2..b291be771 100644 --- a/.github/workflows/test_qdrant.yml +++ b/.github/workflows/test_qdrant.yml @@ -18,16 +18,35 @@ jobs: name: docs changes uses: ./.github/workflows/get_docs_changes.yml + setup_docker: + name: Set up Docker Buildx + runs-on: ubuntu-latest + steps: + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + run_qdrant_integration_test: name: test needs: get_docs_changes if: needs.get_docs_changes.outputs.changes_outside_docs == 'true' - runs-on: macos-latest + runs-on: ubuntu-latest defaults: run: shell: bash + services: + postgres: + image: postgres:latest + env: + POSTGRES_USER: cognee + POSTGRES_PASSWORD: cognee + POSTGRES_DB: cognee_db + volumes: + - postgres_data:/var/lib/postgresql/data + ports: + - 5432:5432 + steps: - name: Check out uses: actions/checkout@v2 @@ -52,6 +71,13 @@ jobs: mkdir .cognee_system echo $(pwd)/.cognee_system + - name: Wait for PostgreSQL to be ready + run: | + echo "Waiting for PostgreSQL to be ready..." + until pg_isready -h localhost -p 5432 -U cognee; do + sleep 1 + done + - name: Run default Qdrant env: OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }} @@ -59,4 +85,13 @@ jobs: VECTOR_DB_URL: ${{ secrets.QDRANT_API_URL }} VECTOR_DB_KEY: ${{ secrets.QDRANT_API_KEY }} ENV: 'dev' + POSTGRES_USER: cognee + POSTGRES_PASSWORD: cognee + POSTGRES_DB: cognee_db + POSTGRES_HOST: localhost + POSTGRES_PORT: 5432 + DESTINATION__POSTGRES__CREDENTIALS__HOST: 127.0.0.1 + DESTINATION__POSTGRES__CREDENTIALS__USERNAME: cognee + DESTINATION__POSTGRES__CREDENTIALS__PASSWORD: cognee + DESTINATION__POSTGRES__CREDENTIALS__DATABASE: cognee_db run: poetry run python ./cognee/tests/test_qdrant.py diff --git a/.github/workflows/test_weaviate.yml b/.github/workflows/test_weaviate.yml index 132ee3e8f..3b0d49b3b 100644 --- a/.github/workflows/test_weaviate.yml +++ b/.github/workflows/test_weaviate.yml @@ -18,16 +18,35 @@ jobs: name: docs changes uses: ./.github/workflows/get_docs_changes.yml + setup_docker: + name: Set up Docker Buildx + runs-on: ubuntu-latest + steps: + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + run_weaviate_integration_test: name: test needs: get_docs_changes if: needs.get_docs_changes.outputs.changes_outside_docs == 'true' - runs-on: macos-latest + runs-on: ubuntu-latest defaults: run: shell: bash + services: + postgres: + image: postgres:latest + env: + POSTGRES_USER: cognee + POSTGRES_PASSWORD: cognee + POSTGRES_DB: cognee_db + volumes: + - postgres_data:/var/lib/postgresql/data + ports: + - 5432:5432 + steps: - name: Check out uses: actions/checkout@v2 @@ -52,6 +71,13 @@ jobs: mkdir .cognee_system echo $(pwd)/.cognee_system + - name: Wait for PostgreSQL to be ready + run: | + echo "Waiting for PostgreSQL to be ready..." + until pg_isready -h localhost -p 5432 -U cognee; do + sleep 1 + done + - name: Run default Weaviate env: OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }} @@ -59,4 +85,13 @@ jobs: VECTOR_DB_URL: ${{ secrets.WEAVIATE_API_URL }} VECTOR_DB_KEY: ${{ secrets.WEAVIATE_API_KEY }} ENV: 'dev' + POSTGRES_USER: cognee + POSTGRES_PASSWORD: cognee + POSTGRES_DB: cognee_db + POSTGRES_HOST: localhost + POSTGRES_PORT: 5432 + DESTINATION__POSTGRES__CREDENTIALS__HOST: 127.0.0.1 + DESTINATION__POSTGRES__CREDENTIALS__USERNAME: cognee + DESTINATION__POSTGRES__CREDENTIALS__PASSWORD: cognee + DESTINATION__POSTGRES__CREDENTIALS__DATABASE: cognee_db run: poetry run python ./cognee/tests/test_weaviate.py diff --git a/.pylintrc b/.pylintrc index 5dd663ba8..aba6f148c 100644 --- a/.pylintrc +++ b/.pylintrc @@ -433,8 +433,9 @@ disable=raw-checker-failed, use-implicit-booleaness-not-comparison-to-zero, missing-module-docstring, missing-function-docstring, - missing-class-docstring - + missing-class-docstring, + relative-beyond-top-level + # Enable the message, report, category or checker with the given id(s). You can # either give multiple identifier separated by comma (,) or put this option diff --git a/cognee-frontend/src/app/page.tsx b/cognee-frontend/src/app/page.tsx index 20676c15e..e1aafe01b 100644 --- a/cognee-frontend/src/app/page.tsx +++ b/cognee-frontend/src/app/page.tsx @@ -48,15 +48,15 @@ export default function Home() { }); }, [showNotification]) - const onDatasetCognify = useCallback((dataset: { id: string }) => { - showNotification(`Cognification started for dataset "${dataset.id}".`, 5000); + const onDatasetCognify = useCallback((dataset: { id: string, name: string }) => { + showNotification(`Cognification started for dataset "${dataset.name}".`, 5000); return cognifyDataset(dataset) .then(() => { - showNotification(`Dataset "${dataset.id}" cognified.`, 5000); + showNotification(`Dataset "${dataset.name}" cognified.`, 5000); }) .catch(() => { - showNotification(`Dataset "${dataset.id}" cognification failed. Please try again.`, 5000); + showNotification(`Dataset "${dataset.name}" cognification failed. Please try again.`, 5000); }); }, [showNotification]); diff --git a/cognee-frontend/src/modules/datasets/cognifyDataset.ts b/cognee-frontend/src/modules/datasets/cognifyDataset.ts index 424abd64f..18bb56c5d 100644 --- a/cognee-frontend/src/modules/datasets/cognifyDataset.ts +++ b/cognee-frontend/src/modules/datasets/cognifyDataset.ts @@ -1,5 +1,5 @@ -export default function cognifyDataset(dataset: { id: string }) { - return fetch('http://0.0.0.0:8000/cognify', { +export default function cognifyDataset(dataset: { id: string, name: string }) { + return fetch('http://127.0.0.1:8000/cognify', { method: 'POST', headers: { 'Content-Type': 'application/json', diff --git a/cognee-frontend/src/modules/datasets/deleteDataset.ts b/cognee-frontend/src/modules/datasets/deleteDataset.ts index dfc686536..d449942e6 100644 --- a/cognee-frontend/src/modules/datasets/deleteDataset.ts +++ b/cognee-frontend/src/modules/datasets/deleteDataset.ts @@ -1,5 +1,5 @@ export default function deleteDataset(dataset: { id: string }) { - return fetch(`http://0.0.0.0:8000/datasets/${dataset.id}`, { + return fetch(`http://127.0.0.1:8000/datasets/${dataset.id}`, { method: 'DELETE', }) } diff --git a/cognee-frontend/src/modules/datasets/getDatasetData.ts b/cognee-frontend/src/modules/datasets/getDatasetData.ts index aa5138383..c2d480c54 100644 --- a/cognee-frontend/src/modules/datasets/getDatasetData.ts +++ b/cognee-frontend/src/modules/datasets/getDatasetData.ts @@ -1,4 +1,4 @@ export default function getDatasetData(dataset: { id: string }) { - return fetch(`http://0.0.0.0:8000/datasets/${dataset.id}/data`) + return fetch(`http://127.0.0.1:8000/datasets/${dataset.id}/data`) .then((response) => response.json()); } diff --git a/cognee-frontend/src/modules/exploration/getExplorationGraphUrl.ts b/cognee-frontend/src/modules/exploration/getExplorationGraphUrl.ts index aa83b1520..6af086d57 100644 --- a/cognee-frontend/src/modules/exploration/getExplorationGraphUrl.ts +++ b/cognee-frontend/src/modules/exploration/getExplorationGraphUrl.ts @@ -1,5 +1,5 @@ export default function getExplorationGraphUrl(dataset: { id: string }) { - return fetch(`http://0.0.0.0:8000/datasets/${dataset.id}/graph`) + return fetch(`http://127.0.0.1:8000/datasets/${dataset.id}/graph`) .then(async (response) => { if (response.status !== 200) { throw new Error((await response.text()).replaceAll("\"", "")); diff --git a/cognee-frontend/src/modules/ingestion/DataView/DataView.module.css b/cognee-frontend/src/modules/ingestion/DataView/DataView.module.css index 69ce64e54..e79e63c31 100644 --- a/cognee-frontend/src/modules/ingestion/DataView/DataView.module.css +++ b/cognee-frontend/src/modules/ingestion/DataView/DataView.module.css @@ -12,6 +12,7 @@ } .dataTable { + color: white; border-collapse: collapse; } .dataTable td, .dataTable th { diff --git a/cognee-frontend/src/modules/ingestion/DataView/DataView.tsx b/cognee-frontend/src/modules/ingestion/DataView/DataView.tsx index d9e66639e..617929793 100644 --- a/cognee-frontend/src/modules/ingestion/DataView/DataView.tsx +++ b/cognee-frontend/src/modules/ingestion/DataView/DataView.tsx @@ -13,8 +13,9 @@ import RawDataPreview from './RawDataPreview'; export interface Data { id: string; name: string; - filePath: string; mimeType: string; + extension: string; + rawDataLocation: string; } interface DatasetLike { @@ -36,7 +37,7 @@ export default function DataView({ datasetId, data, onClose, onDataAdd }: DataVi const showRawData = useCallback((dataItem: Data) => { setSelectedData(dataItem); - fetch(`http://0.0.0.0:8000/datasets/${datasetId}/data/${dataItem.id}/raw`) + fetch(`http://127.0.0.1:8000/datasets/${datasetId}/data/${dataItem.id}/raw`) .then((response) => response.arrayBuffer()) .then(setRawData); @@ -80,7 +81,6 @@ export default function DataView({ datasetId, data, onClose, onDataAdd }: DataVi Name File path MIME type - Keywords @@ -104,10 +104,10 @@ export default function DataView({ datasetId, data, onClose, onDataAdd }: DataVi {dataItem.id} - {dataItem.name} + {dataItem.name}.{dataItem.extension} - {dataItem.filePath} + {dataItem.rawDataLocation} {dataItem.mimeType} diff --git a/cognee-frontend/src/modules/ingestion/DatasetsView/DatasetsView.tsx b/cognee-frontend/src/modules/ingestion/DatasetsView/DatasetsView.tsx index 6babeaa3e..2b27fee32 100644 --- a/cognee-frontend/src/modules/ingestion/DatasetsView/DatasetsView.tsx +++ b/cognee-frontend/src/modules/ingestion/DatasetsView/DatasetsView.tsx @@ -40,7 +40,7 @@ export default function DatasetsView({ .finally(() => enableCognifyRun()); } - const [dataset, setExplorationDataset] = useState<{ id: string } | null>(null); + const [dataset, setExplorationDataset] = useState<{ id: string, name: string } | null>(null); const { value: isExplorationWindowShown, setTrue: showExplorationWindow, @@ -97,7 +97,7 @@ export default function DatasetsView({ - {dataset?.id} + {dataset?.name} diff --git a/cognee-frontend/src/modules/ingestion/addData.ts b/cognee-frontend/src/modules/ingestion/addData.ts index 3087f5e7d..b89160755 100644 --- a/cognee-frontend/src/modules/ingestion/addData.ts +++ b/cognee-frontend/src/modules/ingestion/addData.ts @@ -5,7 +5,7 @@ export default function addData(dataset: { id: string }, files: File[]) { }) formData.append('datasetId', dataset.id); - return fetch('http://0.0.0.0:8000/add', { + return fetch('http://127.0.0.1:8000/add', { method: 'POST', body: formData, }).then((response) => response.json()); diff --git a/cognee-frontend/src/modules/ingestion/useDatasets.ts b/cognee-frontend/src/modules/ingestion/useDatasets.ts index c76f51401..53d94e2ab 100644 --- a/cognee-frontend/src/modules/ingestion/useDatasets.ts +++ b/cognee-frontend/src/modules/ingestion/useDatasets.ts @@ -14,7 +14,7 @@ function useDatasets() { const statusTimeout = useRef(null); const fetchDatasetStatuses = useCallback((datasets: Dataset[]) => { - fetch(`http://0.0.0.0:8000/datasets/status?dataset=${datasets.map(d => d.id).join('&dataset=')}`) + fetch(`http://127.0.0.1:8000/datasets/status?dataset=${datasets.map(d => d.id).join('&dataset=')}`) .then((response) => response.json()) .then((statuses) => setDatasets( (datasets) => ( @@ -65,9 +65,8 @@ function useDatasets() { }, []); const fetchDatasets = useCallback(() => { - fetch('http://0.0.0.0:8000/datasets') + fetch('http://127.0.0.1:8000/datasets') .then((response) => response.json()) - .then((datasets) => datasets.map((dataset: string) => ({ id: dataset, name: dataset }))) .then((datasets) => { setDatasets(datasets); diff --git a/cognee-frontend/src/ui/Partials/SearchView/SearchView.tsx b/cognee-frontend/src/ui/Partials/SearchView/SearchView.tsx index d94c83004..3d3b6af85 100644 --- a/cognee-frontend/src/ui/Partials/SearchView/SearchView.tsx +++ b/cognee-frontend/src/ui/Partials/SearchView/SearchView.tsx @@ -7,7 +7,7 @@ import styles from './SearchView.module.css'; interface Message { id: string; user: 'user' | 'system'; - text: string; + text: any; } interface SelectOption { @@ -98,7 +98,9 @@ export default function SearchView() { [styles.userMessage]: message.user === "user", })} > - {message.text} + {message?.text && ( + typeof(message.text) == "string" ? message.text : JSON.stringify(message.text) + )} ))} diff --git a/cognee-frontend/src/ui/Partials/SettingsModal/Settings.tsx b/cognee-frontend/src/ui/Partials/SettingsModal/Settings.tsx index 134f2164c..05b7b30a5 100644 --- a/cognee-frontend/src/ui/Partials/SettingsModal/Settings.tsx +++ b/cognee-frontend/src/ui/Partials/SettingsModal/Settings.tsx @@ -75,7 +75,7 @@ export default function Settings({ onDone = () => {}, submitButtonText = 'Save' startSaving(); - fetch('http://0.0.0.0:8000/settings', { + fetch('http://127.0.0.1:8000/settings', { method: 'POST', headers: { 'Content-Type': 'application/json', @@ -138,7 +138,7 @@ export default function Settings({ onDone = () => {}, submitButtonText = 'Save' useEffect(() => { const fetchConfig = async () => { - const response = await fetch('http://0.0.0.0:8000/settings'); + const response = await fetch('http://127.0.0.1:8000/settings'); const settings = await response.json(); if (!settings.llm.model) { diff --git a/cognee/api/client.py b/cognee/api/client.py index bee1c2922..74cefcb8e 100644 --- a/cognee/api/client.py +++ b/cognee/api/client.py @@ -3,7 +3,6 @@ import os import aiohttp import uvicorn import json -import asyncio import logging import sentry_sdk from typing import Dict, Any, List, Union, Optional, Literal @@ -13,6 +12,8 @@ from fastapi.responses import JSONResponse, FileResponse from fastapi.middleware.cors import CORSMiddleware from pydantic import BaseModel +from cognee.infrastructure.databases.relational import create_db_and_tables + # Set up logging logging.basicConfig( level=logging.INFO, # Set the logging level (e.g., DEBUG, INFO, WARNING, ERROR, CRITICAL) @@ -27,9 +28,18 @@ if os.getenv("ENV") == "prod": profiles_sample_rate = 1.0, ) -app = FastAPI(debug = os.getenv("ENV") != "prod") +from contextlib import asynccontextmanager + +@asynccontextmanager +async def lifespan(app: FastAPI): + # Not needed if you setup a migration system like Alembic + await create_db_and_tables() + yield + +app = FastAPI(debug = os.getenv("ENV") != "prod", lifespan = lifespan) origins = [ + "http://127.0.0.1:3000", "http://frontend:3000", "http://localhost:3000", "http://localhost:3001", @@ -43,6 +53,47 @@ app.add_middleware( allow_headers=["*"], ) +from cognee.api.v1.users.routers import get_auth_router, get_register_router,\ + get_reset_password_router, get_verify_router, get_users_router + +from cognee.api.v1.permissions.get_permissions_router import get_permissions_router + +app.include_router( + get_auth_router(), + prefix = "/auth/jwt", + tags = ["auth"] +) + +app.include_router( + get_register_router(), + prefix = "/auth", + tags = ["auth"], +) + +app.include_router( + get_reset_password_router(), + prefix = "/auth", + tags = ["auth"], +) + +app.include_router( + get_verify_router(), + prefix = "/auth", + tags = ["auth"], +) + +app.include_router( + get_users_router(), + prefix = "/users", + tags = ["users"], +) + +app.include_router( + get_permissions_router(), + prefix = "/permissions", + tags = ["permissions"], +) + @app.get("/") async def root(): """ @@ -57,21 +108,27 @@ def health_check(): """ return {"status": "OK"} -class Payload(BaseModel): - payload: Dict[str, Any] - -@app.get("/datasets", response_model=list) +@app.get("/datasets", response_model = list) async def get_datasets(): - from cognee.api.v1.datasets.datasets import datasets - return datasets.list_datasets() + try: + from cognee.api.v1.datasets.datasets import datasets + datasets = await datasets.list_datasets() -@app.delete("/datasets/{dataset_id}", response_model=dict) + return JSONResponse( + status_code = 200, + content = [dataset.to_json() for dataset in datasets], + ) + except Exception as error: + raise HTTPException(status_code = 500, detail=f"Error retrieving datasets: {str(error)}") from error + +@app.delete("/datasets/{dataset_id}", response_model = dict) async def delete_dataset(dataset_id: str): from cognee.api.v1.datasets.datasets import datasets - datasets.delete_dataset(dataset_id) + await datasets.delete_dataset(dataset_id) + return JSONResponse( - status_code=200, - content="OK", + status_code = 200, + content = "OK", ) @app.get("/datasets/{dataset_id}/graph", response_model=list) @@ -96,37 +153,43 @@ async def get_dataset_graph(dataset_id: str): @app.get("/datasets/{dataset_id}/data", response_model=list) async def get_dataset_data(dataset_id: str): from cognee.api.v1.datasets.datasets import datasets - dataset_data = datasets.list_data(dataset_id) + + dataset_data = await datasets.list_data(dataset_id = dataset_id) + if dataset_data is None: - raise HTTPException(status_code=404, detail=f"Dataset ({dataset_id}) not found.") + raise HTTPException(status_code = 404, detail = f"Dataset ({dataset_id}) not found.") + return [ - dict( - id=data["id"], - name=f"{data['name']}.{data['extension']}", - filePath=data["file_path"], - mimeType=data["mime_type"], - ) - for data in dataset_data + data.to_json() for data in dataset_data ] @app.get("/datasets/status", response_model=dict) async def get_dataset_status(datasets: Annotated[List[str], Query(alias="dataset")] = None): from cognee.api.v1.datasets.datasets import datasets as cognee_datasets - datasets_statuses = cognee_datasets.get_status(datasets) - return JSONResponse( - status_code = 200, - content = datasets_statuses, - ) + try: + datasets_statuses = await cognee_datasets.get_status(datasets) + + return JSONResponse( + status_code = 200, + content = datasets_statuses, + ) + except Exception as error: + return JSONResponse( + status_code = 409, + content = {"error": str(error)} + ) @app.get("/datasets/{dataset_id}/data/{data_id}/raw", response_class=FileResponse) async def get_raw_data(dataset_id: str, data_id: str): from cognee.api.v1.datasets.datasets import datasets - dataset_data = datasets.list_data(dataset_id) + dataset_data = await datasets.list_data(dataset_id) + if dataset_data is None: - raise HTTPException(status_code=404, detail=f"Dataset ({dataset_id}) not found.") - data = [data for data in dataset_data if data["id"] == data_id][0] - return data["file_path"] + raise HTTPException(status_code = 404, detail = f"Dataset ({dataset_id}) not found.") + + data = [data for data in dataset_data if str(data.id) == data_id][0] + return data.raw_data_location class AddPayload(BaseModel): data: Union[str, UploadFile, List[Union[str, UploadFile]]] @@ -206,24 +269,27 @@ async def search(payload: SearchPayload): from cognee.api.v1.search import search as cognee_search try: search_type = payload.query_params["searchType"] + params = { "query": payload.query_params["query"], } + results = await cognee_search(search_type, params) + return JSONResponse( - status_code=200, - content=json.dumps(results) + status_code = 200, + content = results, ) except Exception as error: return JSONResponse( - status_code=409, - content={"error": str(error)} + status_code = 409, + content = {"error": str(error)} ) @app.get("/settings", response_model=dict) async def get_settings(): - from cognee.modules.settings import get_settings - return get_settings() + from cognee.modules.settings import get_settings as get_cognee_settings + return get_cognee_settings() class LLMConfig(BaseModel): provider: Union[Literal["openai"], Literal["ollama"], Literal["anthropic"]] @@ -262,10 +328,7 @@ def start_api_server(host: str = "0.0.0.0", port: int = 8000): try: logger.info("Starting server at %s:%s", host, port) - from cognee.infrastructure.databases.relational import get_relationaldb_config - relational_config = get_relationaldb_config() - relational_config.create_engine() - + import asyncio from cognee.modules.data.deletion import prune_system, prune_data asyncio.run(prune_data()) asyncio.run(prune_system(metadata = True)) diff --git a/cognee/api/v1/add/add.py b/cognee/api/v1/add/add.py index e5f120573..90e259508 100644 --- a/cognee/api/v1/add/add.py +++ b/cognee/api/v1/add/add.py @@ -3,14 +3,21 @@ from os import path import asyncio import dlt import duckdb + import cognee.modules.ingestion as ingestion from cognee.infrastructure.files.storage import LocalStorage from cognee.modules.ingestion import get_matched_datasets, save_data_to_file from cognee.shared.utils import send_telemetry from cognee.base_config import get_base_config -from cognee.infrastructure.databases.relational.config import get_relationaldb_config +from cognee.infrastructure.databases.relational import get_relational_config, get_relational_engine, create_db_and_tables +from cognee.modules.users.methods import create_default_user, get_default_user +from cognee.modules.users.permissions.methods import give_permission_on_document +from cognee.modules.users.models import User +from cognee.modules.data.operations.ensure_dataset_exists import ensure_dataset_exists + +async def add(data: Union[BinaryIO, List[BinaryIO], str, List[str]], dataset_name: str = "main_dataset", user: User = None): + await create_db_and_tables() -async def add(data: Union[BinaryIO, List[BinaryIO], str, List[str]], dataset_name: str = "main_dataset"): if isinstance(data, str): if "data://" in data: # data is a data directory path @@ -44,11 +51,11 @@ async def add(data: Union[BinaryIO, List[BinaryIO], str, List[str]], dataset_nam file_paths.append(save_data_to_file(data_item, dataset_name)) if len(file_paths) > 0: - return await add_files(file_paths, dataset_name) + return await add_files(file_paths, dataset_name, user) return [] -async def add_files(file_paths: List[str], dataset_name: str): +async def add_files(file_paths: List[str], dataset_name: str, user): base_config = get_base_config() data_directory_path = base_config.data_root_directory @@ -69,20 +76,35 @@ async def add_files(file_paths: List[str], dataset_name: str): else: processed_file_paths.append(file_path) - relational_config = get_relationaldb_config() - db = duckdb.connect(relational_config.db_file_path) + relational_config = get_relational_config() - destination = dlt.destinations.duckdb( - credentials = db, - ) + if relational_config.db_provider == "duckdb": + db = duckdb.connect(relational_config.db_file_path) + + destination = dlt.destinations.duckdb( + credentials = db, + ) + else: + destination = dlt.destinations.postgres( + credentials = { + "host": relational_config.db_host, + "port": relational_config.db_port, + "user": relational_config.db_user, + "password": relational_config.db_password, + "database": relational_config.db_name, + }, + ) pipeline = dlt.pipeline( pipeline_name = "file_load_from_filesystem", destination = destination, ) + dataset_name = dataset_name.replace(" ", "_").replace(".", "_") if dataset_name is not None else "main_dataset" + dataset = await ensure_dataset_exists(dataset_name) + @dlt.resource(standalone = True, merge_key = "id") - def data_resources(file_paths: str): + async def data_resources(file_paths: str, user: User): for file_path in file_paths: with open(file_path.replace("file://", ""), mode = "rb") as file: classified_data = ingestion.classify(file) @@ -91,6 +113,35 @@ async def add_files(file_paths: List[str], dataset_name: str): file_metadata = classified_data.get_metadata() + from sqlalchemy import select + from cognee.modules.data.models import Data + db_engine = get_relational_engine() + async with db_engine.get_async_session() as session: + data = (await session.execute( + select(Data).filter(Data.id == data_id) + )).scalar_one_or_none() + + if data is not None: + data.name = file_metadata["name"] + data.raw_data_location = file_metadata["file_path"] + data.extension = file_metadata["extension"] + data.mime_type = file_metadata["mime_type"] + + await session.merge(data) + else: + data = Data( + id = data_id, + name = file_metadata["name"], + raw_data_location = file_metadata["file_path"], + extension = file_metadata["extension"], + mime_type = file_metadata["mime_type"], + ) + dataset.data.append(data) + + await session.merge(dataset) + + await session.commit() + yield { "id": data_id, "name": file_metadata["name"], @@ -99,10 +150,20 @@ async def add_files(file_paths: List[str], dataset_name: str): "mime_type": file_metadata["mime_type"], } + await give_permission_on_document(user, data_id, "read") + await give_permission_on_document(user, data_id, "write") + + + if user is None: + user = await get_default_user() + + if user is None: + user = await create_default_user() + run_info = pipeline.run( - data_resources(processed_file_paths), + data_resources(processed_file_paths, user), table_name = "file_metadata", - dataset_name = dataset_name.replace(" ", "_").replace(".", "_") if dataset_name is not None else "main_dataset", + dataset_name = dataset_name, write_disposition = "merge", ) send_telemetry("cognee.add") diff --git a/cognee/api/v1/authenticate_user/__init__.py b/cognee/api/v1/authenticate_user/__init__.py new file mode 100644 index 000000000..67538a7e3 --- /dev/null +++ b/cognee/api/v1/authenticate_user/__init__.py @@ -0,0 +1 @@ +from .authenticate_user import authenticate_user diff --git a/cognee/api/v1/authenticate_user/authenticate_user.py b/cognee/api/v1/authenticate_user/authenticate_user.py new file mode 100644 index 000000000..6761c65b8 --- /dev/null +++ b/cognee/api/v1/authenticate_user/authenticate_user.py @@ -0,0 +1,24 @@ +from cognee.infrastructure.databases.relational.user_authentication.users import authenticate_user_method + + +async def authenticate_user(email: str, password: str): + """ + This function is used to authenticate a user. + """ + output = await authenticate_user_method(email=email, password=password) + return output + + +if __name__ == "__main__": + import asyncio + # Define an example user + example_email = "example@example.com" + example_password = "securepassword123" + example_is_superuser = False + + # Create an event loop and run the create_user function + loop = asyncio.get_event_loop() + result = loop.run_until_complete(authenticate_user(example_email, example_password)) + + # Print the result + print(result) diff --git a/cognee/api/v1/cognify/cognify.py b/cognee/api/v1/cognify/cognify.py index 632d52c04..a11a2cb8b 100644 --- a/cognee/api/v1/cognify/cognify.py +++ b/cognee/api/v1/cognify/cognify.py @@ -30,9 +30,10 @@ from cognee.shared.utils import send_telemetry from cognee.modules.tasks import create_task_status_table, update_task_status from cognee.shared.SourceCodeGraph import SourceCodeGraph from cognee.modules.tasks import get_task_status +from cognee.modules.data.operations.get_dataset_data import get_dataset_data from cognee.infrastructure.data.chunking.config import get_chunk_config from cognee.modules.cognify.config import get_cognify_config -from cognee.infrastructure.databases.relational.config import get_relationaldb_config +from cognee.infrastructure.databases.relational import get_relational_engine USER_ID = "default_user" @@ -45,15 +46,14 @@ async def cognify(datasets: Union[str, List[str]] = None): # Has to be loaded in advance, multithreading doesn't work without it. nltk.download("stopwords", quiet=True) stopwords.ensure_loaded() - create_task_status_table() + await create_task_status_table() graph_client = await get_graph_engine() - relational_config = get_relationaldb_config() - db_engine = relational_config.database_engine + db_engine = get_relational_engine() if datasets is None or len(datasets) == 0: - datasets = db_engine.get_datasets() + datasets = await db_engine.get_datasets() awaitables = [] @@ -83,7 +83,7 @@ async def cognify(datasets: Union[str, List[str]] = None): graphs = await asyncio.gather(*awaitables) return graphs[0] - added_datasets = db_engine.get_datasets() + added_datasets = await db_engine.get_datasets() # datasets is a dataset name string dataset_files = [] @@ -91,7 +91,7 @@ async def cognify(datasets: Union[str, List[str]] = None): for added_dataset in added_datasets: if dataset_name in added_dataset: - dataset_files.append((added_dataset, db_engine.get_files_metadata(added_dataset))) + dataset_files.append((added_dataset, await get_dataset_data(dataset_name = added_dataset))) chunk_config = get_chunk_config() chunk_engine = get_chunk_engine() @@ -167,7 +167,7 @@ async def cognify(datasets: Union[str, List[str]] = None): else: document_id = await add_document_node( graph_client, - parent_node_id = file_metadata['id'], + parent_node_id = file_metadata["id"], document_metadata = file_metadata, ) @@ -226,7 +226,7 @@ async def process_text(chunk_collection: str, chunk_id: str, input_text: str, fi if cognify_config.connect_documents is True: - db_engine = get_relationaldb_config().database_engine + db_engine = get_relational_engine() relevant_documents_to_connect = db_engine.fetch_cognify_data(excluded_document_id = document_id) list_of_nodes = [] diff --git a/cognee/api/v1/cognify/cognify_v2.py b/cognee/api/v1/cognify/cognify_v2.py index 4f9bb163c..9f2f95398 100644 --- a/cognee/api/v1/cognify/cognify_v2.py +++ b/cognee/api/v1/cognify/cognify_v2.py @@ -4,7 +4,7 @@ from typing import Union from cognee.infrastructure.databases.graph import get_graph_config from cognee.modules.cognify.config import get_cognify_config -from cognee.infrastructure.databases.relational.config import get_relationaldb_config +from cognee.infrastructure.databases.relational import get_relational_engine from cognee.modules.data.processing.document_types.AudioDocument import AudioDocument from cognee.modules.data.processing.document_types.ImageDocument import ImageDocument from cognee.shared.data_models import KnowledgeGraph @@ -17,32 +17,72 @@ from cognee.modules.data.processing.filter_affected_chunks import filter_affecte from cognee.modules.data.processing.remove_obsolete_chunks import remove_obsolete_chunks from cognee.modules.data.extraction.knowledge_graph.expand_knowledge_graph import expand_knowledge_graph from cognee.modules.data.extraction.knowledge_graph.establish_graph_topology import establish_graph_topology +from cognee.modules.data.models import Dataset, Data +from cognee.modules.data.operations.get_dataset_data import get_dataset_data +from cognee.modules.data.operations.retrieve_datasets import retrieve_datasets from cognee.modules.pipelines.tasks.Task import Task from cognee.modules.pipelines import run_tasks, run_tasks_parallel -from cognee.modules.tasks import create_task_status_table, update_task_status, get_task_status +from cognee.modules.users.models import User +from cognee.modules.users.methods import get_default_user +from cognee.modules.users.permissions.methods import check_permissions_on_documents +from cognee.modules.pipelines.operations.get_pipeline_status import get_pipeline_status +from cognee.modules.pipelines.operations.log_pipeline_status import log_pipeline_status logger = logging.getLogger("cognify.v2") update_status_lock = asyncio.Lock() -async def cognify(datasets: Union[str, list[str]] = None, root_node_id: str = None): - relational_config = get_relationaldb_config() - db_engine = relational_config.database_engine - create_task_status_table() +class PermissionDeniedException(Exception): + def __init__(self, message: str): + self.message = message + super().__init__(self.message) + +async def cognify(datasets: Union[str, list[str]] = None, user: User = None): + db_engine = get_relational_engine() if datasets is None or len(datasets) == 0: - return await cognify(db_engine.get_datasets()) + return await cognify(await db_engine.get_datasets()) + if type(datasets[0]) == str: + datasets = await retrieve_datasets(datasets) + + if user is None: + user = await get_default_user() + + async def run_cognify_pipeline(dataset: Dataset): + data: list[Data] = await get_dataset_data(dataset_id = dataset.id) + + documents = [ + PdfDocument(id = data_item.id, title=f"{data_item.name}.{data_item.extension}", file_path=data_item.raw_data_location) if data_item.extension == "pdf" else + AudioDocument(id = data_item.id, title=f"{data_item.name}.{data_item.extension}", file_path=data_item.raw_data_location) if data_item.extension == "audio" else + ImageDocument(id = data_item.id, title=f"{data_item.name}.{data_item.extension}", file_path=data_item.raw_data_location) if data_item.extension == "image" else + TextDocument(id = data_item.id, title=f"{data_item.name}.{data_item.extension}", file_path=data_item.raw_data_location) + for data_item in data + ] + + document_ids = [document.id for document in documents] + document_ids_str = list(map(str, document_ids)) + + await check_permissions_on_documents( + user, + "read", + document_ids, + ) + + dataset_id = dataset.id + dataset_name = generate_dataset_name(dataset.name) - async def run_cognify_pipeline(dataset_name: str, files: list[dict]): async with update_status_lock: - task_status = get_task_status([dataset_name]) + task_status = await get_pipeline_status([dataset_id]) - if dataset_name in task_status and task_status[dataset_name] == "DATASET_PROCESSING_STARTED": - logger.info(f"Dataset {dataset_name} is being processed.") + if dataset_id in task_status and task_status[dataset_id] == "DATASET_PROCESSING_STARTED": + logger.info("Dataset %s is already being processed.", dataset_name) return - update_task_status(dataset_name, "DATASET_PROCESSING_STARTED") + await log_pipeline_status(dataset_id, "DATASET_PROCESSING_STARTED", { + "dataset_name": dataset_name, + "files": document_ids_str, + }) try: cognee_config = get_cognify_config() graph_config = get_graph_config() @@ -51,7 +91,7 @@ async def cognify(datasets: Union[str, list[str]] = None, root_node_id: str = No if graph_config.infer_graph_topology and graph_config.graph_topology_task: from cognee.modules.topology.topology import TopologyEngine topology_engine = TopologyEngine(infer=graph_config.infer_graph_topology) - root_node_id = await topology_engine.add_graph_topology(files = files) + root_node_id = await topology_engine.add_graph_topology(files = data) elif graph_config.infer_graph_topology and not graph_config.infer_graph_topology: from cognee.modules.topology.topology import TopologyEngine topology_engine = TopologyEngine(infer=graph_config.infer_graph_topology) @@ -82,58 +122,34 @@ async def cognify(datasets: Union[str, list[str]] = None, root_node_id: str = No Task(remove_obsolete_chunks), # Remove the obsolete document chunks. ] - pipeline = run_tasks(tasks, [ - PdfDocument(title=f"{file['name']}.{file['extension']}", file_path=file["file_path"]) if file["extension"] == "pdf" else - AudioDocument(title=f"{file['name']}.{file['extension']}", file_path=file["file_path"]) if file["extension"] == "audio" else - ImageDocument(title=f"{file['name']}.{file['extension']}", file_path=file["file_path"]) if file["extension"] == "image" else - TextDocument(title=f"{file['name']}.{file['extension']}", file_path=file["file_path"]) - for file in files - ]) + pipeline = run_tasks(tasks, documents) async for result in pipeline: print(result) - update_task_status(dataset_name, "DATASET_PROCESSING_FINISHED") + await log_pipeline_status(dataset_id, "DATASET_PROCESSING_FINISHED", { + "dataset_name": dataset_name, + "files": document_ids_str, + }) except Exception as error: - update_task_status(dataset_name, "DATASET_PROCESSING_ERROR") + await log_pipeline_status(dataset_id, "DATASET_PROCESSING_ERROR", { + "dataset_name": dataset_name, + "files": document_ids_str, + }) raise error - existing_datasets = db_engine.get_datasets() - + existing_datasets = [dataset.name for dataset in list(await db_engine.get_datasets())] awaitables = [] - - # dataset_files = [] - # dataset_name = datasets.replace(".", "_").replace(" ", "_") - - # for added_dataset in existing_datasets: - # if dataset_name in added_dataset: - # dataset_files.append((added_dataset, db_engine.get_files_metadata(added_dataset))) - for dataset in datasets: - if dataset in existing_datasets: - # for file_metadata in files: - # if root_node_id is None: - # root_node_id=file_metadata['id'] - awaitables.append(run_cognify_pipeline(dataset, db_engine.get_files_metadata(dataset))) + dataset_name = generate_dataset_name(dataset.name) + + if dataset_name in existing_datasets: + awaitables.append(run_cognify_pipeline(dataset)) return await asyncio.gather(*awaitables) -# -# if __name__ == "__main__": -# from cognee.api.v1.add import add -# from cognee.api.v1.datasets.datasets import datasets -# -# -# async def aa(): -# await add("TEXT ABOUT NLP AND MONKEYS") -# -# print(datasets.discover_datasets()) -# -# return - - - - # asyncio.run(cognify()) +def generate_dataset_name(dataset_name: str) -> str: + return dataset_name.replace(".", "_").replace(" ", "_") diff --git a/cognee/api/v1/config/config.py b/cognee/api/v1/config/config.py index b284c622f..2a9eb63d0 100644 --- a/cognee/api/v1/config/config.py +++ b/cognee/api/v1/config/config.py @@ -5,16 +5,17 @@ from cognee.modules.cognify.config import get_cognify_config from cognee.infrastructure.data.chunking.config import get_chunk_config from cognee.infrastructure.databases.vector import get_vectordb_config from cognee.infrastructure.databases.graph.config import get_graph_config -from cognee.infrastructure.databases.relational import get_relationaldb_config +from cognee.infrastructure.databases.relational import get_relational_config +from cognee.infrastructure.files.storage import LocalStorage class config(): @staticmethod def system_root_directory(system_root_directory: str): databases_directory_path = os.path.join(system_root_directory, "databases") - relational_config = get_relationaldb_config() + relational_config = get_relational_config() relational_config.db_path = databases_directory_path - relational_config.create_engine() + LocalStorage.ensure_directory_exists(databases_directory_path) graph_config = get_graph_config() graph_config.graph_file_path = os.path.join(databases_directory_path, "cognee.graph") diff --git a/cognee/api/v1/datasets/datasets.py b/cognee/api/v1/datasets/datasets.py index 92ae14ce9..2054d7dcd 100644 --- a/cognee/api/v1/datasets/datasets.py +++ b/cognee/api/v1/datasets/datasets.py @@ -1,40 +1,37 @@ from duckdb import CatalogException from cognee.modules.ingestion import discover_directory_datasets -from cognee.modules.tasks import get_task_status -from cognee.infrastructure.databases.relational.config import get_relationaldb_config +from cognee.modules.data.operations.get_dataset_data import get_dataset_data +from cognee.modules.pipelines.operations.get_pipeline_status import get_pipeline_status +from cognee.infrastructure.databases.relational import get_relational_engine class datasets(): @staticmethod - def list_datasets(): - relational_config = get_relationaldb_config() - db = relational_config.database_engine - return db.get_datasets() + async def list_datasets(): + db = get_relational_engine() + return await db.get_datasets() @staticmethod def discover_datasets(directory_path: str): return list(discover_directory_datasets(directory_path).keys()) @staticmethod - def list_data(dataset_name: str): - relational_config = get_relationaldb_config() - db = relational_config.database_engine + async def list_data(dataset_id: str, dataset_name: str = None): try: - return db.get_files_metadata(dataset_name) + return await get_dataset_data(dataset_id = dataset_id, dataset_name = dataset_name) except CatalogException: return None @staticmethod - def get_status(dataset_ids: list[str]) -> dict: + async def get_status(dataset_ids: list[str]) -> dict: try: - return get_task_status(dataset_ids) + return await get_pipeline_status(dataset_ids) except CatalogException: return {} @staticmethod - def delete_dataset(dataset_id: str): - relational_config = get_relationaldb_config() - db = relational_config.database_engine + async def delete_dataset(dataset_id: str): + db = get_relational_engine() try: - return db.delete_table(dataset_id) + return await db.delete_table(dataset_id) except CatalogException: return {} diff --git a/cognee/api/v1/permissions/get_permissions_router.py b/cognee/api/v1/permissions/get_permissions_router.py new file mode 100644 index 000000000..ab20fb1a2 --- /dev/null +++ b/cognee/api/v1/permissions/get_permissions_router.py @@ -0,0 +1,43 @@ +from fastapi import APIRouter, Depends, HTTPException +from fastapi.responses import JSONResponse +from sqlalchemy.orm import Session +from cognee.modules.users import get_user_db +from cognee.modules.users.models import User, Group, Permission + +def get_permissions_router() -> APIRouter: + permissions_router = APIRouter() + + @permissions_router.post("/groups/{group_id}/permissions") + async def give_permission_to_group(group_id: int, permission: str, db: Session = Depends(get_user_db)): + group = db.query(Group).filter(Group.id == group_id).first() + + if not group: + raise HTTPException(status_code = 404, detail = "Group not found") + + permission = db.query(Permission).filter(Permission.name == permission).first() + + if not permission: + permission = Permission(name = permission) + db.add(permission) + + group.permissions.append(permission) + + db.commit() + + return JSONResponse(status_code = 200, content = {"message": "Permission assigned to group"}) + + @permissions_router.post("/users/{user_id}/groups") + async def add_user_to_group(user_id: int, group_id: int, db: Session = Depends(get_user_db)): + user = db.query(User).filter(User.id == user_id).first() + group = db.query(Group).filter(Group.id == group_id).first() + + if not user or not group: + raise HTTPException(status_code = 404, detail = "User or group not found") + + user.groups.append(group) + + db.commit() + + return JSONResponse(status_code = 200, content = {"message": "User added to group"}) + + return permissions_router diff --git a/cognee/api/v1/search/search.py b/cognee/api/v1/search/search.py index f42e94ae6..7bd363e7d 100644 --- a/cognee/api/v1/search/search.py +++ b/cognee/api/v1/search/search.py @@ -10,6 +10,9 @@ from cognee.modules.search.vector.search_traverse import search_traverse from cognee.modules.search.graph.search_summary import search_summary from cognee.modules.search.graph.search_similarity import search_similarity from cognee.shared.utils import send_telemetry +from cognee.modules.users.permissions.methods import get_document_ids_for_user +from cognee.modules.users.methods import get_default_user +from cognee.modules.users.models import User class SearchType(Enum): ADJACENT = "ADJACENT" @@ -25,23 +28,40 @@ class SearchType(Enum): def from_str(name: str): try: return SearchType[name.upper()] - except KeyError: - raise ValueError(f"{name} is not a valid SearchType") + except KeyError as error: + raise ValueError(f"{name} is not a valid SearchType") from error class SearchParameters(BaseModel): search_type: SearchType params: Dict[str, Any] @field_validator("search_type", mode="before") - def convert_string_to_enum(cls, value): + def convert_string_to_enum(cls, value): # pylint: disable=no-self-argument if isinstance(value, str): return SearchType.from_str(value) return value -async def search(search_type: str, params: Dict[str, Any]) -> List: +async def search(search_type: str, params: Dict[str, Any], user: User = None) -> List: + if user is None: + user = await get_default_user() + + own_document_ids = await get_document_ids_for_user(user.id) search_params = SearchParameters(search_type = search_type, params = params) - return await specific_search([search_params]) + search_results = await specific_search([search_params]) + + from uuid import UUID + + filtered_search_results = [] + + for search_result in search_results: + document_id = search_result["document_id"] if "document_id" in search_result else None + document_id = UUID(document_id) if type(document_id) == str else document_id + + if document_id is None or document_id in own_document_ids: + filtered_search_results.append(search_result) + + return filtered_search_results async def specific_search(query_params: List[SearchParameters]) -> List: @@ -53,7 +73,6 @@ async def specific_search(query_params: List[SearchParameters]) -> List: SearchType.SIMILARITY: search_similarity, } - results = [] search_tasks = [] for search_param in query_params: @@ -66,38 +85,6 @@ async def specific_search(query_params: List[SearchParameters]) -> List: # Use asyncio.gather to run all scheduled tasks concurrently search_results = await asyncio.gather(*search_tasks) - # Update the results set with the results from all tasks - results.extend(search_results) - send_telemetry("cognee.search") - return results[0] if len(results) == 1 else results - - - -if __name__ == "__main__": - async def main(): - # Assuming 'graph' is your graph object, obtained from somewhere - search_type = 'CATEGORIES' - params = {'query': 'Ministarstvo', 'other_param': {"node_id": "LLM_LAYER_SUMMARY:DOCUMENT:881ecb36-2819-54c3-8147-ed80293084d6"}} - - results = await search(search_type, params) - print(results) - - # Run the async main function - asyncio.run(main()) -# if __name__ == "__main__": -# import asyncio - -# query_params = { -# SearchType.SIMILARITY: {'query': 'your search query here'} -# } -# async def main(): -# graph_client = get_graph_engine() - -# await graph_client.load_graph_from_file() -# graph = graph_client.graph -# results = await search(graph, query_params) -# print(results) - -# asyncio.run(main()) + return search_results[0] if len(search_results) == 1 else search_results diff --git a/cognee/api/v1/users/__init__.py b/cognee/api/v1/users/__init__.py new file mode 100644 index 000000000..aad3147da --- /dev/null +++ b/cognee/api/v1/users/__init__.py @@ -0,0 +1 @@ +from .create_user import create_user diff --git a/cognee/api/v1/users/create_user.py b/cognee/api/v1/users/create_user.py new file mode 100644 index 000000000..eba7a6e89 --- /dev/null +++ b/cognee/api/v1/users/create_user.py @@ -0,0 +1,12 @@ +from cognee.modules.users.methods import create_user as create_user_method + + +async def create_user(email: str, password: str, is_superuser: bool = False): + user = await create_user_method( + email = email, + password = password, + is_superuser = is_superuser, + is_verified = True, + ) + + return user diff --git a/cognee/api/v1/users/routers/__init__.py b/cognee/api/v1/users/routers/__init__.py new file mode 100644 index 000000000..482aac265 --- /dev/null +++ b/cognee/api/v1/users/routers/__init__.py @@ -0,0 +1,5 @@ +from .get_auth_router import get_auth_router +from .get_register_router import get_register_router +from .get_reset_password_router import get_reset_password_router +from .get_users_router import get_users_router +from .get_verify_router import get_verify_router diff --git a/cognee/api/v1/users/routers/get_auth_router.py b/cognee/api/v1/users/routers/get_auth_router.py new file mode 100644 index 000000000..8a65cde35 --- /dev/null +++ b/cognee/api/v1/users/routers/get_auth_router.py @@ -0,0 +1,6 @@ +from cognee.modules.users.get_fastapi_users import get_fastapi_users +from cognee.modules.users.authentication.get_auth_backend import get_auth_backend + +def get_auth_router(): + auth_backend = get_auth_backend() + return get_fastapi_users().get_auth_router(auth_backend) diff --git a/cognee/api/v1/users/routers/get_register_router.py b/cognee/api/v1/users/routers/get_register_router.py new file mode 100644 index 000000000..a1152c01c --- /dev/null +++ b/cognee/api/v1/users/routers/get_register_router.py @@ -0,0 +1,5 @@ +from cognee.modules.users.get_fastapi_users import get_fastapi_users +from cognee.modules.users.models.User import UserRead, UserCreate + +def get_register_router(): + return get_fastapi_users().get_register_router(UserRead, UserCreate) diff --git a/cognee/api/v1/users/routers/get_reset_password_router.py b/cognee/api/v1/users/routers/get_reset_password_router.py new file mode 100644 index 000000000..c058abe2a --- /dev/null +++ b/cognee/api/v1/users/routers/get_reset_password_router.py @@ -0,0 +1,4 @@ +from cognee.modules.users.get_fastapi_users import get_fastapi_users + +def get_reset_password_router(): + return get_fastapi_users().get_reset_password_router() diff --git a/cognee/api/v1/users/routers/get_users_router.py b/cognee/api/v1/users/routers/get_users_router.py new file mode 100644 index 000000000..b81be73b0 --- /dev/null +++ b/cognee/api/v1/users/routers/get_users_router.py @@ -0,0 +1,5 @@ +from cognee.modules.users.get_fastapi_users import get_fastapi_users +from cognee.modules.users.models.User import UserRead, UserUpdate + +def get_users_router(): + return get_fastapi_users().get_users_router(UserRead, UserUpdate) diff --git a/cognee/api/v1/users/routers/get_verify_router.py b/cognee/api/v1/users/routers/get_verify_router.py new file mode 100644 index 000000000..0c18b08c2 --- /dev/null +++ b/cognee/api/v1/users/routers/get_verify_router.py @@ -0,0 +1,5 @@ +from cognee.modules.users.get_fastapi_users import get_fastapi_users +from cognee.modules.users.models.User import UserRead + +def get_verify_router(): + return get_fastapi_users().get_verify_router(UserRead) diff --git a/cognee/infrastructure/data/__init__.py b/cognee/infrastructure/data/__init__.py index 6aaaf6b41..e69de29bb 100644 --- a/cognee/infrastructure/data/__init__.py +++ b/cognee/infrastructure/data/__init__.py @@ -1,3 +0,0 @@ -from .models.Data import Data -from .models.Dataset import Dataset -from .models.DatasetData import DatasetData diff --git a/cognee/infrastructure/data/models/Data.py b/cognee/infrastructure/data/models/Data.py deleted file mode 100644 index 906958430..000000000 --- a/cognee/infrastructure/data/models/Data.py +++ /dev/null @@ -1,23 +0,0 @@ -from typing import List -from datetime import datetime, timezone -from sqlalchemy.orm import relationship, MappedColumn, Mapped -from sqlalchemy import Column, String, DateTime, UUID, Text, JSON -from cognee.infrastructure.databases.relational import ModelBase -from .DatasetData import DatasetData - -class Data(ModelBase): - __tablename__ = "data" - - id = Column(UUID, primary_key = True) - name = Column(String, nullable = True) - description = Column(Text, nullable = True) - raw_data_location = Column(String) - meta_data: Mapped[dict] = MappedColumn(type_ = JSON) # metadata is reserved word - - created_at = Column(DateTime, default = datetime.now(timezone.utc)) - updated_at = Column(DateTime, onupdate = datetime.now(timezone.utc)) - - datasets: Mapped[List["Dataset"]] = relationship( - secondary = DatasetData.__tablename__, - back_populates = "data" - ) diff --git a/cognee/infrastructure/data/models/Dataset.py b/cognee/infrastructure/data/models/Dataset.py deleted file mode 100644 index 5c7e55304..000000000 --- a/cognee/infrastructure/data/models/Dataset.py +++ /dev/null @@ -1,21 +0,0 @@ -from typing import List -from datetime import datetime, timezone -from sqlalchemy.orm import relationship, Mapped -from sqlalchemy import Column, Text, DateTime, UUID -from cognee.infrastructure.databases.relational import ModelBase -from .DatasetData import DatasetData - -class Dataset(ModelBase): - __tablename__ = "dataset" - - id = Column(UUID, primary_key = True) - name = Column(Text) - description = Column(Text, nullable = True) - - created_at = Column(DateTime, default = datetime.now(timezone.utc)) - updated_at = Column(DateTime, onupdate = datetime.now(timezone.utc)) - - data: Mapped[List["Data"]] = relationship( - secondary = DatasetData.__tablename__, - back_populates = "datasets" - ) diff --git a/cognee/infrastructure/data/models/DatasetData.py b/cognee/infrastructure/data/models/DatasetData.py deleted file mode 100644 index 286142d89..000000000 --- a/cognee/infrastructure/data/models/DatasetData.py +++ /dev/null @@ -1,14 +0,0 @@ -from uuid import uuid4 -from datetime import datetime, timezone -from sqlalchemy import Column, DateTime, UUID, ForeignKey -from cognee.infrastructure.databases.relational import ModelBase - -class DatasetData(ModelBase): - __tablename__ = "dataset_data" - - id = Column(UUID, primary_key = True, default = uuid4()) - - created_at = Column(DateTime, default = datetime.now(timezone.utc)) - - dataset_id = Column("dataset", UUID, ForeignKey("dataset.id"), primary_key = True) - data_id = Column("data", UUID, ForeignKey("data.id"), primary_key = True) diff --git a/cognee/infrastructure/databases/graph/neo4j_driver/adapter.py b/cognee/infrastructure/databases/graph/neo4j_driver/adapter.py index 1c55f1e39..e7ccfb917 100644 --- a/cognee/infrastructure/databases/graph/neo4j_driver/adapter.py +++ b/cognee/infrastructure/databases/graph/neo4j_driver/adapter.py @@ -21,7 +21,8 @@ class Neo4jAdapter(GraphDBInterface): ): self.driver = driver or AsyncGraphDatabase.driver( graph_database_url, - auth = (graph_database_username, graph_database_password) + auth = (graph_database_username, graph_database_password), + max_connection_lifetime = 120 ) async def close(self) -> None: diff --git a/cognee/infrastructure/databases/relational/FakeAsyncSession.py b/cognee/infrastructure/databases/relational/FakeAsyncSession.py new file mode 100644 index 000000000..cd7e4b6a3 --- /dev/null +++ b/cognee/infrastructure/databases/relational/FakeAsyncSession.py @@ -0,0 +1,29 @@ +import inspect +from typing import Any + +from sqlalchemy.ext.asyncio import AsyncSession +from sqlalchemy.orm import Session + +class FakeAsyncSession: + def __init__(self, session: Session): + self.session = session + + def run_sync(self, *args, **kwargs): + return self.execute(*args, **kwargs) + + def __getattr__(self, name: str) -> Any: + """ + If the method being called is async in AsyncSession, create a fake async version + for Session so callers can `await` as usual. Think `commit`, `refresh`, + `delete`, etc. + """ + async_session_attr = getattr(AsyncSession, name, None) + session_attr = getattr(self.session, name) + + if not inspect.iscoroutinefunction(async_session_attr): + return session_attr + + async def async_wrapper(*args, **kwargs): + return session_attr(*args, **kwargs) + + return async_wrapper diff --git a/cognee/infrastructure/databases/relational/ModelBase.py b/cognee/infrastructure/databases/relational/ModelBase.py index 3ae4eeff4..f75ec448b 100644 --- a/cognee/infrastructure/databases/relational/ModelBase.py +++ b/cognee/infrastructure/databases/relational/ModelBase.py @@ -1,3 +1,4 @@ -from sqlalchemy.orm import declarative_base +from sqlalchemy.orm import DeclarativeBase -ModelBase = declarative_base() +class Base(DeclarativeBase): + pass diff --git a/cognee/infrastructure/databases/relational/__init__.py b/cognee/infrastructure/databases/relational/__init__.py index 277553c82..61ff4ef85 100644 --- a/cognee/infrastructure/databases/relational/__init__.py +++ b/cognee/infrastructure/databases/relational/__init__.py @@ -1,5 +1,7 @@ -from .ModelBase import ModelBase +from .ModelBase import Base from .DatabaseEngine import DatabaseEngine from .sqlite.SqliteEngine import SqliteEngine from .duckdb.DuckDBAdapter import DuckDBAdapter -from .config import get_relationaldb_config +from .config import get_relational_config +from .create_db_and_tables import create_db_and_tables +from .get_relational_engine import get_relational_engine diff --git a/cognee/infrastructure/databases/relational/config.py b/cognee/infrastructure/databases/relational/config.py index f0ddfc01d..e5e4854e2 100644 --- a/cognee/infrastructure/databases/relational/config.py +++ b/cognee/infrastructure/databases/relational/config.py @@ -2,23 +2,20 @@ import os from functools import lru_cache from pydantic_settings import BaseSettings, SettingsConfigDict from cognee.root_dir import get_absolute_path -from .create_relational_engine import create_relational_engine class RelationalConfig(BaseSettings): db_path: str = os.path.join(get_absolute_path(".cognee_system"), "databases") - db_name: str = "cognee.db" - db_host: str = "localhost" + db_name: str = "cognee_db" + db_host: str = "127.0.0.1" db_port: str = "5432" db_user: str = "cognee" db_password: str = "cognee" - database_engine: object = create_relational_engine(db_path, db_name) + db_provider: str = "postgresql+asyncpg" + # db_provider: str = "duckdb" db_file_path: str = os.path.join(db_path, db_name) - model_config = SettingsConfigDict(env_file = ".env", extra = "allow") - def create_engine(self): - self.db_file_path = os.path.join(self.db_path, self.db_name) - self.database_engine = create_relational_engine(self.db_path, self.db_name) + model_config = SettingsConfigDict(env_file = ".env", extra = "allow") def to_dict(self) -> dict: return { @@ -28,9 +25,9 @@ class RelationalConfig(BaseSettings): "db_port": self.db_port, "db_user": self.db_user, "db_password": self.db_password, - "db_engine": self.database_engine, + "db_provider": self.db_provider, } @lru_cache -def get_relationaldb_config(): +def get_relational_config(): return RelationalConfig() diff --git a/cognee/infrastructure/databases/relational/create_db_and_tables.py b/cognee/infrastructure/databases/relational/create_db_and_tables.py new file mode 100644 index 000000000..d6cf22f87 --- /dev/null +++ b/cognee/infrastructure/databases/relational/create_db_and_tables.py @@ -0,0 +1,9 @@ +from .ModelBase import Base +from .get_relational_engine import get_relational_engine + +async def create_db_and_tables(): + relational_engine = get_relational_engine() + + async with relational_engine.engine.begin() as connection: + if len(Base.metadata.tables.keys()) > 0: + await connection.run_sync(Base.metadata.create_all) diff --git a/cognee/infrastructure/databases/relational/create_relational_engine.py b/cognee/infrastructure/databases/relational/create_relational_engine.py index 416152f59..713614eab 100644 --- a/cognee/infrastructure/databases/relational/create_relational_engine.py +++ b/cognee/infrastructure/databases/relational/create_relational_engine.py @@ -1,10 +1,21 @@ -from cognee.infrastructure.files.storage import LocalStorage -from cognee.infrastructure.databases.relational import DuckDBAdapter +from .sqlalchemy.SqlAlchemyAdapter import SQLAlchemyAdapter -def create_relational_engine(db_path: str, db_name: str): - LocalStorage.ensure_directory_exists(db_path) - return DuckDBAdapter( +def create_relational_engine( + db_path: str, + db_name: str, + db_provider: str, + db_host: str, + db_port: str, + db_user: str, + db_password: str, +): + return SQLAlchemyAdapter( db_name = db_name, db_path = db_path, + db_type = db_provider, + db_host = db_host, + db_port = db_port, + db_user = db_user, + db_password = db_password ) diff --git a/cognee/infrastructure/databases/relational/duckdb/DuckDBAdapter.py b/cognee/infrastructure/databases/relational/duckdb/DuckDBAdapter.py index 1a0fbde3e..2695e04cc 100644 --- a/cognee/infrastructure/databases/relational/duckdb/DuckDBAdapter.py +++ b/cognee/infrastructure/databases/relational/duckdb/DuckDBAdapter.py @@ -79,7 +79,6 @@ class DuckDBAdapter(): connection.execute(""" CREATE TABLE IF NOT EXISTS cognify ( document_id STRING, - layer_id STRING, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, updated_at TIMESTAMP DEFAULT NULL, processed BOOLEAN DEFAULT FALSE, @@ -89,8 +88,8 @@ class DuckDBAdapter(): # Prepare the insert statement insert_query = """ - INSERT INTO cognify (document_id, layer_id) - VALUES (?, ?); + INSERT INTO cognify (document_id) + VALUES (?); """ # Insert each record into the "cognify" table @@ -98,7 +97,6 @@ class DuckDBAdapter(): with self.get_connection() as connection: connection.execute(insert_query, [ record.get("document_id"), - record.get("layer_id") ]) def fetch_cognify_data(self, excluded_document_id: str): @@ -106,7 +104,6 @@ class DuckDBAdapter(): create_table_sql = """ CREATE TABLE IF NOT EXISTS cognify ( document_id STRING, - layer_id STRING, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, updated_at TIMESTAMP DEFAULT NULL, processed BOOLEAN DEFAULT FALSE, @@ -118,7 +115,7 @@ class DuckDBAdapter(): connection.execute(create_table_sql) # SQL command to select data from the "cognify" table - select_data_sql = f"SELECT document_id, layer_id, created_at, updated_at, processed FROM cognify WHERE document_id != '{excluded_document_id}' AND processed = FALSE;" + select_data_sql = f"SELECT document_id, created_at, updated_at, processed FROM cognify WHERE document_id != '{excluded_document_id}' AND processed = FALSE;" with self.get_connection() as connection: # Execute the query and fetch the results @@ -144,7 +141,6 @@ class DuckDBAdapter(): create_table_sql = """ CREATE TABLE IF NOT EXISTS cognify ( document_id STRING, - layer_id STRING, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, updated_at TIMESTAMP DEFAULT NULL, processed BOOLEAN DEFAULT FALSE, @@ -166,7 +162,8 @@ class DuckDBAdapter(): def delete_database(self): from cognee.infrastructure.files.storage import LocalStorage - LocalStorage.remove(self.db_location) + if LocalStorage.file_exists(self.db_location): + LocalStorage.remove(self.db_location) if LocalStorage.file_exists(self.db_location + ".wal"): LocalStorage.remove(self.db_location + ".wal") diff --git a/cognee/infrastructure/databases/relational/get_relational_engine.py b/cognee/infrastructure/databases/relational/get_relational_engine.py new file mode 100644 index 000000000..6024c7bd0 --- /dev/null +++ b/cognee/infrastructure/databases/relational/get_relational_engine.py @@ -0,0 +1,8 @@ +from .config import get_relational_config +from .create_relational_engine import create_relational_engine + + +def get_relational_engine(): + relational_config = get_relational_config() + + return create_relational_engine(**relational_config.to_dict()) diff --git a/cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py b/cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py new file mode 100644 index 000000000..c4b0a1e01 --- /dev/null +++ b/cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py @@ -0,0 +1,109 @@ +import os +import asyncio +from typing import AsyncGenerator +from contextlib import asynccontextmanager +from sqlalchemy import create_engine, text, select +from sqlalchemy.orm import sessionmaker, joinedload +from sqlalchemy.ext.asyncio import AsyncSession, create_async_engine, async_sessionmaker +from cognee.infrastructure.files.storage import LocalStorage +from cognee.infrastructure.databases.relational.FakeAsyncSession import FakeAsyncSession +from ..ModelBase import Base + +def make_async_sessionmaker(sessionmaker): + @asynccontextmanager + async def async_session_maker(): + await asyncio.sleep(0.1) + yield FakeAsyncSession(sessionmaker()) + + return async_session_maker + +class SQLAlchemyAdapter(): + def __init__(self, db_type: str, db_path: str, db_name: str, db_user: str, db_password: str, db_host: str, db_port: str): + self.db_location = os.path.abspath(os.path.join(db_path, db_name)) + self.db_name = db_name + + if db_type == "duckdb": + LocalStorage.ensure_directory_exists(db_path) + + self.engine = create_engine(f"duckdb:///{self.db_location}") + self.sessionmaker = make_async_sessionmaker(sessionmaker(bind = self.engine)) + else: + self.engine = create_async_engine(f"postgresql+asyncpg://{db_user}:{db_password}@{db_host}:{db_port}/{db_name}") + self.sessionmaker = async_sessionmaker(bind = self.engine, expire_on_commit = False) + + + @asynccontextmanager + async def get_async_session(self) -> AsyncGenerator[AsyncSession, None]: + async_session_maker = self.sessionmaker + async with async_session_maker() as session: + yield session + + def get_session(self): + session_maker = self.sessionmaker + with session_maker() as session: + yield session + + async def get_datasets(self): + from cognee.modules.data.models import Dataset + + async with self.get_async_session() as session: + datasets = (await session.execute(select(Dataset).options(joinedload(Dataset.data)))).unique().scalars().all() + return datasets + + async def create_table(self, schema_name: str, table_name: str, table_config: list[dict]): + fields_query_parts = [f"{item['name']} {item['type']}" for item in table_config] + async with self.engine.begin() as connection: + await connection.execute(text(f"CREATE SCHEMA IF NOT EXISTS {schema_name};")) + await connection.execute(text(f"CREATE TABLE IF NOT EXISTS {schema_name}.{table_name} ({', '.join(fields_query_parts)});")) + + async def delete_table(self, table_name: str): + async with self.engine.connect() as connection: + await connection.execute(text(f"DROP TABLE IF EXISTS {table_name};")) + + async def insert_data(self, schema_name: str, table_name: str, data: list[dict]): + columns = ", ".join(data[0].keys()) + values = ", ".join([f"({', '.join([f':{key}' for key in row.keys()])})" for row in data]) + insert_query = text(f"INSERT INTO {schema_name}.{table_name} ({columns}) VALUES {values};") + async with self.engine.connect() as connection: + await connection.execute(insert_query, data) + + async def get_data(self, table_name: str, filters: dict = None): + async with self.engine.connect() as connection: + query = f"SELECT * FROM {table_name}" + if filters: + filter_conditions = " AND ".join([ + f"{key} IN ({', '.join([f':{key}{i}' for i in range(len(value))])})" if isinstance(value, list) + else f"{key} = :{key}" for key, value in filters.items() + ]) + query += f" WHERE {filter_conditions};" + query = text(query) + results = await connection.execute(query, filters) + else: + query += ";" + query = text(query) + results = await connection.execute(query) + return {result["data_id"]: result["status"] for result in results} + + async def execute_query(self, query): + async with self.engine.connect() as connection: + result = await connection.execute(text(query)) + return [dict(row) for row in result] + + async def drop_tables(self, connection): + try: + await connection.execute(text("DROP TABLE IF EXISTS group_permission CASCADE")) + await connection.execute(text("DROP TABLE IF EXISTS permissions CASCADE")) + # Add more DROP TABLE statements for other tables as needed + print("Database tables dropped successfully.") + except Exception as e: + print(f"Error dropping database tables: {e}") + + async def delete_database(self): + async with self.engine.connect() as connection: + try: + async with self.engine.begin() as connection: + await connection.run_sync(Base.metadata.drop_all) + + print("Database deleted successfully.") + except Exception as e: + print(f"Error deleting database: {e}") diff --git a/cognee/infrastructure/data/models/__init__.py b/cognee/infrastructure/databases/relational/sqlalchemy/__init__.py similarity index 100% rename from cognee/infrastructure/data/models/__init__.py rename to cognee/infrastructure/databases/relational/sqlalchemy/__init__.py diff --git a/cognee/infrastructure/databases/relational/sqlite/SqliteEngine.py b/cognee/infrastructure/databases/relational/sqlite/SqliteEngine.py index 126be6437..c636b1fd3 100644 --- a/cognee/infrastructure/databases/relational/sqlite/SqliteEngine.py +++ b/cognee/infrastructure/databases/relational/sqlite/SqliteEngine.py @@ -6,7 +6,7 @@ from sqlalchemy.ext.asyncio import create_async_engine, async_sessionmaker, Asyn from sqlalchemy.future import select from cognee.infrastructure.files.storage.LocalStorage import LocalStorage from ..DatabaseEngine import DatabaseEngine -from ..ModelBase import ModelBase +from ..ModelBase import Base from ..utils import with_rollback class SqliteEngine(DatabaseEngine): @@ -60,7 +60,7 @@ class SqliteEngine(DatabaseEngine): async def create_tables(self): async with self.engine.begin() as connection: - return await connection.run_sync(ModelBase.metadata.create_all) + return await connection.run_sync(Base.metadata.create_all) async def create(self, data): async with with_rollback(self.session_maker()) as session: diff --git a/cognee/modules/data/deletion/prune_system.py b/cognee/modules/data/deletion/prune_system.py index 70627bdc7..38c625558 100644 --- a/cognee/modules/data/deletion/prune_system.py +++ b/cognee/modules/data/deletion/prune_system.py @@ -1,6 +1,6 @@ from cognee.infrastructure.databases.vector import get_vector_engine from cognee.infrastructure.databases.graph.get_graph_engine import get_graph_engine -from cognee.infrastructure.databases.relational import get_relationaldb_config +from cognee.infrastructure.databases.relational import get_relational_engine async def prune_system(graph = True, vector = True, metadata = False): if graph: @@ -12,6 +12,5 @@ async def prune_system(graph = True, vector = True, metadata = False): await vector_engine.prune() if metadata: - db_config = get_relationaldb_config() - db_engine = db_config.database_engine - db_engine.delete_database() + db_engine = get_relational_engine() + await db_engine.delete_database() diff --git a/cognee/modules/data/extraction/data_summary/summarize_text_chunks.py b/cognee/modules/data/extraction/data_summary/summarize_text_chunks.py index fa481a7d9..922ece6c9 100644 --- a/cognee/modules/data/extraction/data_summary/summarize_text_chunks.py +++ b/cognee/modules/data/extraction/data_summary/summarize_text_chunks.py @@ -26,6 +26,7 @@ async def summarize_text_chunks(data_chunks: list[DocumentChunk], summarization_ id = str(chunk.chunk_id), payload = dict( chunk_id = str(chunk.chunk_id), + document_id = str(chunk.document_id), text = chunk_summaries[chunk_index].summary, ), embed_field = "text", diff --git a/cognee/modules/data/extraction/knowledge_graph/expand_knowledge_graph.py b/cognee/modules/data/extraction/knowledge_graph/expand_knowledge_graph.py index 3735b41b9..0a959df52 100644 --- a/cognee/modules/data/extraction/knowledge_graph/expand_knowledge_graph.py +++ b/cognee/modules/data/extraction/knowledge_graph/expand_knowledge_graph.py @@ -1,7 +1,7 @@ import json import asyncio from uuid import uuid5, NAMESPACE_OID -from datetime import datetime +from datetime import datetime, timezone from typing import Type from pydantic import BaseModel from cognee.infrastructure.databases.graph import get_graph_engine @@ -91,8 +91,8 @@ async def expand_knowledge_graph(data_chunks: list[DocumentChunk], graph_model: name = node_name, type = node_name, description = node.description, - created_at = datetime.now().strftime("%Y-%m-%d %H:%M:%S"), - updated_at = datetime.now().strftime("%Y-%m-%d %H:%M:%S"), + created_at = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S"), + updated_at = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S"), ) graph_nodes.append(( @@ -145,8 +145,8 @@ async def expand_knowledge_graph(data_chunks: list[DocumentChunk], graph_model: name = type_node_name, type = type_node_id, description = type_node_name, - created_at = datetime.now().strftime("%Y-%m-%d %H:%M:%S"), - updated_at = datetime.now().strftime("%Y-%m-%d %H:%M:%S"), + created_at = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S"), + updated_at = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S"), ) graph_nodes.append((type_node_id, dict( diff --git a/cognee/modules/data/models/Data.py b/cognee/modules/data/models/Data.py new file mode 100644 index 000000000..3985d4971 --- /dev/null +++ b/cognee/modules/data/models/Data.py @@ -0,0 +1,37 @@ +from uuid import uuid4 +from typing import List +from datetime import datetime, timezone +from sqlalchemy.orm import relationship, Mapped +from sqlalchemy import Column, String, DateTime, UUID +from cognee.infrastructure.databases.relational import Base +from .DatasetData import DatasetData + +class Data(Base): + __tablename__ = "data" + + id = Column(UUID(as_uuid = True), primary_key = True, default = uuid4) + + name = Column(String) + extension = Column(String) + mime_type = Column(String) + raw_data_location = Column(String) + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + updated_at = Column(DateTime(timezone = True), onupdate = lambda: datetime.now(timezone.utc)) + + datasets: Mapped[List["Dataset"]] = relationship( + secondary = DatasetData.__tablename__, + back_populates = "data" + ) + + def to_json(self) -> dict: + return { + "id": str(self.id), + "name": self.name, + "extension": self.extension, + "mimeType": self.mime_type, + "rawDataLocation": self.raw_data_location, + "createdAt": self.created_at.isoformat(), + "updatedAt": self.updated_at.isoformat() if self.updated_at else None, + # "datasets": [dataset.to_json() for dataset in self.datasets] + } diff --git a/cognee/modules/data/models/Dataset.py b/cognee/modules/data/models/Dataset.py new file mode 100644 index 000000000..da52e7b09 --- /dev/null +++ b/cognee/modules/data/models/Dataset.py @@ -0,0 +1,31 @@ +from uuid import uuid4 +from typing import List +from datetime import datetime, timezone +from sqlalchemy.orm import relationship, Mapped +from sqlalchemy import Column, Text, DateTime, UUID +from cognee.infrastructure.databases.relational import Base +from .DatasetData import DatasetData + +class Dataset(Base): + __tablename__ = "datasets" + + id = Column(UUID(as_uuid = True), primary_key = True, default = uuid4) + + name = Column(Text) + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + updated_at = Column(DateTime(timezone = True), onupdate = lambda: datetime.now(timezone.utc)) + + data: Mapped[List["Data"]] = relationship( + secondary = DatasetData.__tablename__, + back_populates = "datasets" + ) + + def to_json(self) -> dict: + return { + "id": str(self.id), + "name": self.name, + "createdAt": self.created_at.isoformat(), + "updatedAt": self.updated_at.isoformat() if self.updated_at else None, + "data": [data.to_json() for data in self.data] + } diff --git a/cognee/modules/data/models/DatasetData.py b/cognee/modules/data/models/DatasetData.py new file mode 100644 index 000000000..d340889f2 --- /dev/null +++ b/cognee/modules/data/models/DatasetData.py @@ -0,0 +1,11 @@ +from datetime import datetime, timezone +from sqlalchemy import Column, DateTime, UUID, ForeignKey +from cognee.infrastructure.databases.relational import Base + +class DatasetData(Base): + __tablename__ = "dataset_data" + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + + dataset_id = Column(UUID(as_uuid = True), ForeignKey("datasets.id"), primary_key = True) + data_id = Column(UUID(as_uuid = True), ForeignKey("data.id"), primary_key = True) diff --git a/cognee/modules/data/models/__init__.py b/cognee/modules/data/models/__init__.py new file mode 100644 index 000000000..5d79dbd40 --- /dev/null +++ b/cognee/modules/data/models/__init__.py @@ -0,0 +1,2 @@ +from .Data import Data +from .Dataset import Dataset diff --git a/cognee/modules/data/operations/ensure_dataset_exists.py b/cognee/modules/data/operations/ensure_dataset_exists.py new file mode 100644 index 000000000..9de662cae --- /dev/null +++ b/cognee/modules/data/operations/ensure_dataset_exists.py @@ -0,0 +1,26 @@ +from sqlalchemy import select +from sqlalchemy.orm import joinedload +from cognee.modules.data.models import Dataset +from cognee.infrastructure.databases.relational import get_relational_engine + +async def ensure_dataset_exists(dataset_name: str) -> Dataset: + db_engine = get_relational_engine() + + async with db_engine.get_async_session() as session: + dataset = (await session.scalars( + select(Dataset)\ + .options(joinedload(Dataset.data))\ + .filter(Dataset.name == dataset_name) + )).first() + + if dataset is None: + dataset = Dataset( + name = dataset_name, + data = [] + ) + + session.add(dataset) + + await session.commit() + + return dataset diff --git a/cognee/modules/data/operations/get_dataset_data.py b/cognee/modules/data/operations/get_dataset_data.py new file mode 100644 index 000000000..f086591eb --- /dev/null +++ b/cognee/modules/data/operations/get_dataset_data.py @@ -0,0 +1,18 @@ +from uuid import UUID +from sqlalchemy import select +from cognee.modules.data.models import Data, Dataset +from cognee.infrastructure.databases.relational import get_relational_engine + +async def get_dataset_data(dataset_id: UUID = None, dataset_name: str = None): + if dataset_id is None and dataset_name is None: + raise ValueError("get_dataset_data: Either dataset_id or dataset_name must be provided.") + + db_engine = get_relational_engine() + + async with db_engine.get_async_session() as session: + result = await session.execute( + select(Data).join(Data.datasets).filter((Dataset.id == dataset_id) | (Dataset.name == dataset_name)) + ) + data = result.scalars().all() + + return data diff --git a/cognee/modules/data/operations/retrieve_datasets.py b/cognee/modules/data/operations/retrieve_datasets.py new file mode 100644 index 000000000..0be2071c0 --- /dev/null +++ b/cognee/modules/data/operations/retrieve_datasets.py @@ -0,0 +1,13 @@ +from sqlalchemy import select +from cognee.infrastructure.databases.relational import get_relational_engine +from ..models import Dataset + +async def retrieve_datasets(dataset_names: list[str]) -> list[Dataset]: + db_engine = get_relational_engine() + + async with db_engine.get_async_session() as session: + datasets = (await session.scalars( + select(Dataset).filter(Dataset.name.in_(dataset_names)) + )).all() + + return datasets diff --git a/cognee/modules/data/processing/document_types/AudioDocument.py b/cognee/modules/data/processing/document_types/AudioDocument.py index bc129b66b..e3aa6dca7 100644 --- a/cognee/modules/data/processing/document_types/AudioDocument.py +++ b/cognee/modules/data/processing/document_types/AudioDocument.py @@ -1,5 +1,5 @@ -from uuid import uuid5, NAMESPACE_OID -from typing import Optional, Generator +from uuid import UUID, uuid5, NAMESPACE_OID +from typing import Optional from cognee.infrastructure.llm.get_llm_client import get_llm_client from cognee.modules.data.chunking import chunk_by_paragraph @@ -7,10 +7,10 @@ from cognee.modules.data.processing.chunk_types.DocumentChunk import DocumentChu from cognee.modules.data.processing.document_types.Document import Document class AudioReader: - id: str + id: UUID file_path: str - def __init__(self, id: str, file_path: str): + def __init__(self, id: UUID, file_path: str): self.id = id self.file_path = file_path self.llm_client = get_llm_client() # You can choose different models like "tiny", "base", "small", etc. @@ -87,13 +87,11 @@ class AudioDocument(Document): title: str file_path: str - def __init__(self, title: str, file_path: str): - self.id = uuid5(NAMESPACE_OID, title) + def __init__(self, id: UUID, title: str, file_path: str): + self.id = id or uuid5(NAMESPACE_OID, title) self.title = title self.file_path = file_path - reader = AudioReader(self.id, self.file_path) - def get_reader(self) -> AudioReader: reader = AudioReader(self.id, self.file_path) return reader diff --git a/cognee/modules/data/processing/document_types/ImageDocument.py b/cognee/modules/data/processing/document_types/ImageDocument.py index aa99c672b..faddb3120 100644 --- a/cognee/modules/data/processing/document_types/ImageDocument.py +++ b/cognee/modules/data/processing/document_types/ImageDocument.py @@ -1,5 +1,5 @@ -from uuid import uuid5, NAMESPACE_OID -from typing import Optional, Generator +from uuid import UUID, uuid5, NAMESPACE_OID +from typing import Optional from cognee.infrastructure.llm.get_llm_client import get_llm_client from cognee.modules.data.chunking import chunk_by_paragraph @@ -7,10 +7,10 @@ from cognee.modules.data.processing.chunk_types.DocumentChunk import DocumentChu from cognee.modules.data.processing.document_types.Document import Document class ImageReader: - id: str + id: UUID file_path: str - def __init__(self, id: str, file_path: str): + def __init__(self, id: UUID, file_path: str): self.id = id self.file_path = file_path self.llm_client = get_llm_client() # You can choose different models like "tiny", "base", "small", etc. @@ -24,10 +24,8 @@ class ImageReader: # Transcribe the image file result = self.llm_client.transcribe_image(self.file_path) - print("Transcription result: ", result.choices[0].message.content) text = result.choices[0].message.content - # Simulate reading text in chunks as done in TextReader def read_text_chunks(text, chunk_size): for i in range(0, len(text), chunk_size): @@ -89,13 +87,11 @@ class ImageDocument(Document): title: str file_path: str - def __init__(self, title: str, file_path: str): - self.id = uuid5(NAMESPACE_OID, title) + def __init__(self, id: UUID, title: str, file_path: str): + self.id = id or uuid5(NAMESPACE_OID, title) self.title = title self.file_path = file_path - reader = ImageReader(self.id, self.file_path) - def get_reader(self) -> ImageReader: reader = ImageReader(self.id, self.file_path) return reader diff --git a/cognee/modules/data/processing/document_types/PdfDocument.py b/cognee/modules/data/processing/document_types/PdfDocument.py index 9402da7c9..b2579a06a 100644 --- a/cognee/modules/data/processing/document_types/PdfDocument.py +++ b/cognee/modules/data/processing/document_types/PdfDocument.py @@ -1,6 +1,6 @@ # import pdfplumber import logging -from uuid import uuid5, NAMESPACE_OID +from uuid import UUID, uuid5, NAMESPACE_OID from typing import Optional from pypdf import PdfReader as pypdf_PdfReader from cognee.modules.data.chunking import chunk_by_paragraph @@ -8,10 +8,10 @@ from cognee.modules.data.processing.chunk_types.DocumentChunk import DocumentChu from .Document import Document class PdfReader(): - id: str + id: UUID file_path: str - def __init__(self, id: str, file_path: str): + def __init__(self, id: UUID, file_path: str): self.id = id self.file_path = file_path @@ -86,8 +86,8 @@ class PdfDocument(Document): num_pages: int file_path: str - def __init__(self, title: str, file_path: str): - self.id = uuid5(NAMESPACE_OID, title) + def __init__(self, id: UUID, title: str, file_path: str): + self.id = id or uuid5(NAMESPACE_OID, title) self.title = title self.file_path = file_path logging.debug("file_path: %s", self.file_path) diff --git a/cognee/modules/data/processing/document_types/TextDocument.py b/cognee/modules/data/processing/document_types/TextDocument.py index 2e5bf4452..7e9ca8862 100644 --- a/cognee/modules/data/processing/document_types/TextDocument.py +++ b/cognee/modules/data/processing/document_types/TextDocument.py @@ -1,14 +1,14 @@ -from uuid import uuid5, NAMESPACE_OID +from uuid import UUID, uuid5, NAMESPACE_OID from typing import Optional from cognee.modules.data.chunking import chunk_by_paragraph from cognee.modules.data.processing.chunk_types.DocumentChunk import DocumentChunk from .Document import Document class TextReader(): - id: str + id: UUID file_path: str - def __init__(self, id: str, file_path: str): + def __init__(self, id: UUID, file_path: str): self.id = id self.file_path = file_path @@ -90,8 +90,8 @@ class TextDocument(Document): num_pages: int file_path: str - def __init__(self, title: str, file_path: str): - self.id = uuid5(NAMESPACE_OID, title) + def __init__(self, id: UUID, title: str, file_path: str): + self.id = id or uuid5(NAMESPACE_OID, title) self.title = title self.file_path = file_path diff --git a/cognee/modules/data/processing/process_documents.py b/cognee/modules/data/processing/process_documents.py index 1eb3bbd3e..8df8067b6 100644 --- a/cognee/modules/data/processing/process_documents.py +++ b/cognee/modules/data/processing/process_documents.py @@ -1,7 +1,7 @@ from cognee.infrastructure.databases.graph import get_graph_engine from .document_types import Document -async def process_documents(documents: list[Document], parent_node_id: str = None): +async def process_documents(documents: list[Document], parent_node_id: str = None, user:str=None, user_permissions:str=None): graph_engine = await get_graph_engine() nodes = [] @@ -16,6 +16,9 @@ async def process_documents(documents: list[Document], parent_node_id: str = Non document_node = document_nodes[document_index] if document_index in document_nodes else None if document_node is None: + document_dict = document.to_dict() + document_dict["user"] = user + document_dict["user_permissions"] = user_permissions nodes.append((str(document.id), document.to_dict())) if parent_node_id: diff --git a/cognee/modules/ingestion/data_types/BinaryData.py b/cognee/modules/ingestion/data_types/BinaryData.py index 5531fec86..6959eb15f 100644 --- a/cognee/modules/ingestion/data_types/BinaryData.py +++ b/cognee/modules/ingestion/data_types/BinaryData.py @@ -17,7 +17,7 @@ class BinaryData(IngestionData): def get_identifier(self): metadata = self.get_metadata() - return self.name + "_" + metadata["mime_type"] + return self.name + "." + metadata["extension"] def get_metadata(self): self.ensure_metadata() diff --git a/cognee/modules/ingestion/identify.py b/cognee/modules/ingestion/identify.py index 89c347449..745aab913 100644 --- a/cognee/modules/ingestion/identify.py +++ b/cognee/modules/ingestion/identify.py @@ -1,9 +1,7 @@ -from uuid import uuid5, UUID +from uuid import uuid5, NAMESPACE_OID from .data_types import IngestionData -null_uuid: UUID = UUID("00000000-0000-0000-0000-000000000000") - def identify(data: IngestionData) -> str: data_id: str = data.get_identifier() - return str(uuid5(null_uuid, data_id)).replace("-", "") + return uuid5(NAMESPACE_OID, data_id) diff --git a/cognee/modules/pipelines/models/Pipeline.py b/cognee/modules/pipelines/models/Pipeline.py index 7666b8bbf..8904e00dc 100644 --- a/cognee/modules/pipelines/models/Pipeline.py +++ b/cognee/modules/pipelines/models/Pipeline.py @@ -1,22 +1,22 @@ -from typing import List from uuid import uuid4 from datetime import datetime, timezone from sqlalchemy import Column, UUID, DateTime, String, Text from sqlalchemy.orm import relationship, Mapped -from cognee.infrastructure.databases.relational import ModelBase +from cognee.infrastructure.databases.relational import Base from .PipelineTask import PipelineTask -class Pipeline(ModelBase): +class Pipeline(Base): __tablename__ = "pipelines" - id = Column(UUID, primary_key = True, default = uuid4()) + id = Column(UUID(as_uuid = True), primary_key = True, default = uuid4) + name = Column(String) description = Column(Text, nullable = True) - created_at = Column(DateTime, default = datetime.now(timezone.utc)) - updated_at = Column(DateTime, onupdate = datetime.now(timezone.utc)) + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + updated_at = Column(DateTime(timezone = True), onupdate = lambda: datetime.now(timezone.utc)) - tasks = Mapped[List["Task"]] = relationship( + tasks = Mapped[list["Task"]] = relationship( secondary = PipelineTask.__tablename__, back_populates = "pipeline", ) diff --git a/cognee/modules/pipelines/models/PipelineRun.py b/cognee/modules/pipelines/models/PipelineRun.py new file mode 100644 index 000000000..ccd5e9eeb --- /dev/null +++ b/cognee/modules/pipelines/models/PipelineRun.py @@ -0,0 +1,16 @@ +from uuid import uuid4 +from datetime import datetime, timezone +from sqlalchemy import Column, UUID, DateTime, String, JSON +from cognee.infrastructure.databases.relational import Base + +class PipelineRun(Base): + __tablename__ = "pipeline_runs" + + id = Column(UUID(as_uuid = True), primary_key = True, default = uuid4) + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + + status = Column(String) + + run_id = Column(UUID(as_uuid = True), index = True) + run_info = Column(JSON) diff --git a/cognee/modules/pipelines/models/PipelineTask.py b/cognee/modules/pipelines/models/PipelineTask.py index 82b618368..079b12f47 100644 --- a/cognee/modules/pipelines/models/PipelineTask.py +++ b/cognee/modules/pipelines/models/PipelineTask.py @@ -1,14 +1,11 @@ -from uuid import uuid4 from datetime import datetime, timezone from sqlalchemy import Column, DateTime, UUID, ForeignKey -from cognee.infrastructure.databases.relational import ModelBase +from cognee.infrastructure.databases.relational import Base -class PipelineTask(ModelBase): +class PipelineTask(Base): __tablename__ = "pipeline_task" - id = Column(UUID, primary_key = True, default = uuid4()) + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) - created_at = Column(DateTime, default = datetime.now(timezone.utc)) - - pipeline_id = Column("pipeline", UUID, ForeignKey("pipeline.id"), primary_key = True) - task_id = Column("task", UUID, ForeignKey("task.id"), primary_key = True) + pipeline_id = Column("pipeline", UUID(as_uuid = True), ForeignKey("pipeline.id"), primary_key = True) + task_id = Column("task", UUID(as_uuid = True), ForeignKey("task.id"), primary_key = True) diff --git a/cognee/modules/pipelines/models/Task.py b/cognee/modules/pipelines/models/Task.py index 34a193dc7..3a56f4b71 100644 --- a/cognee/modules/pipelines/models/Task.py +++ b/cognee/modules/pipelines/models/Task.py @@ -1,24 +1,24 @@ from uuid import uuid4 -from typing import List from datetime import datetime, timezone from sqlalchemy.orm import relationship, Mapped from sqlalchemy import Column, String, DateTime, UUID, Text -from cognee.infrastructure.databases.relational import ModelBase +from cognee.infrastructure.databases.relational import Base from .PipelineTask import PipelineTask -class Task(ModelBase): +class Task(Base): __tablename__ = "tasks" - id = Column(UUID, primary_key = True, default = uuid4()) + id = Column(UUID(as_uuid = True), primary_key = True, default = uuid4) + name = Column(String) description = Column(Text, nullable = True) executable = Column(Text) - created_at = Column(DateTime, default = datetime.now(timezone.utc)) - updated_at = Column(DateTime, onupdate = datetime.now(timezone.utc)) + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + updated_at = Column(DateTime(timezone = True), onupdate = lambda: datetime.now(timezone.utc)) - datasets: Mapped[List["Pipeline"]] = relationship( + datasets: Mapped[list["Pipeline"]] = relationship( secondary = PipelineTask.__tablename__, back_populates = "task" ) diff --git a/cognee/modules/pipelines/models/TaskRun.py b/cognee/modules/pipelines/models/TaskRun.py new file mode 100644 index 000000000..89cda8b44 --- /dev/null +++ b/cognee/modules/pipelines/models/TaskRun.py @@ -0,0 +1,17 @@ +from uuid import uuid4 +from datetime import datetime, timezone +from sqlalchemy import Column, UUID, DateTime, String, JSON +from cognee.infrastructure.databases.relational import Base + +class TaskRun(Base): + __tablename__ = "task_runs" + + id = Column(UUID(as_uuid = True), primary_key = True, default = uuid4) + + task_name = Column(String) + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + + status = Column(String) + + run_info = Column(JSON) diff --git a/cognee/modules/pipelines/models/__init__.py b/cognee/modules/pipelines/models/__init__.py new file mode 100644 index 000000000..27a936983 --- /dev/null +++ b/cognee/modules/pipelines/models/__init__.py @@ -0,0 +1 @@ +from .PipelineRun import PipelineRun diff --git a/cognee/modules/pipelines/operations/add_task.py b/cognee/modules/pipelines/operations/add_task.py deleted file mode 100644 index deb491993..000000000 --- a/cognee/modules/pipelines/operations/add_task.py +++ /dev/null @@ -1,4 +0,0 @@ -from ..models import Pipeline, Task - -def add_task(pipeline: Pipeline, task: Task): - pipeline.tasks.append(task) diff --git a/cognee/modules/pipelines/operations/get_pipeline_status.py b/cognee/modules/pipelines/operations/get_pipeline_status.py new file mode 100644 index 000000000..4249d3bf0 --- /dev/null +++ b/cognee/modules/pipelines/operations/get_pipeline_status.py @@ -0,0 +1,41 @@ +from uuid import UUID +from sqlalchemy import func, select +from sqlalchemy.orm import aliased +from cognee.infrastructure.databases.relational import get_relational_engine +from ..models import PipelineRun + +async def get_pipeline_status(pipeline_ids: list[UUID]): + db_engine = get_relational_engine() + + async with db_engine.get_async_session() as session: + query = select( + PipelineRun, + func.row_number().over( + partition_by = PipelineRun.run_id, + order_by = PipelineRun.created_at.desc(), + ).label("rn") + ).filter(PipelineRun.run_id.in_(pipeline_ids)).subquery() + + aliased_pipeline_run = aliased(PipelineRun, query) + + latest_runs = ( + select(aliased_pipeline_run).filter(query.c.rn == 1) + ) + + runs = (await session.execute(latest_runs)).scalars().all() + + pipeline_statuses = { + str(run.run_id): run.status for run in runs + } + + return pipeline_statuses + + # f"""SELECT data_id, status + # FROM ( + # SELECT data_id, status, ROW_NUMBER() OVER (PARTITION BY data_id ORDER BY created_at DESC) as rn + # FROM cognee.cognee.task_runs + # WHERE data_id IN ({formatted_data_ids}) + # ) t + # WHERE rn = 1;""" + + # return { dataset["data_id"]: dataset["status"] for dataset in datasets_statuses } diff --git a/cognee/modules/pipelines/operations/log_pipeline_status.py b/cognee/modules/pipelines/operations/log_pipeline_status.py new file mode 100644 index 000000000..94872dee4 --- /dev/null +++ b/cognee/modules/pipelines/operations/log_pipeline_status.py @@ -0,0 +1,15 @@ +from uuid import UUID +from cognee.infrastructure.databases.relational import get_relational_engine +from ..models.PipelineRun import PipelineRun + +async def log_pipeline_status(run_id: UUID, status: str, run_info: dict): + db_engine = get_relational_engine() + + async with db_engine.get_async_session() as session: + session.add(PipelineRun( + run_id = run_id, + status = status, + run_info = run_info, + )) + + await session.commit() diff --git a/cognee/modules/search/graph/search_similarity.py b/cognee/modules/search/graph/search_similarity.py index 24bb17ba4..dd48ce382 100644 --- a/cognee/modules/search/graph/search_similarity.py +++ b/cognee/modules/search/graph/search_similarity.py @@ -12,6 +12,16 @@ async def search_similarity(query: str) -> list[str, str]: similar_results = await vector_engine.search("chunks", query, limit = 5) - results = [result.payload for result in similar_results] + results = [ + parse_payload(result.payload) for result in similar_results + ] return results + + +def parse_payload(payload: dict) -> dict: + return { + "text": payload["text"], + "chunk_id": payload["chunk_id"], + "document_id": payload["document_id"], + } diff --git a/cognee/modules/tasks/__init__.py b/cognee/modules/tasks/__init__.py deleted file mode 100644 index e0cc3da4a..000000000 --- a/cognee/modules/tasks/__init__.py +++ /dev/null @@ -1,3 +0,0 @@ -from .get_task_status import get_task_status -from .update_task_status import update_task_status -from .create_task_status_table import create_task_status_table diff --git a/cognee/modules/tasks/create_task_status_table.py b/cognee/modules/tasks/create_task_status_table.py deleted file mode 100644 index f92709f06..000000000 --- a/cognee/modules/tasks/create_task_status_table.py +++ /dev/null @@ -1,11 +0,0 @@ -from cognee.infrastructure.databases.relational.config import get_relationaldb_config - -def create_task_status_table(): - config = get_relationaldb_config() - db_engine = config.database_engine - - db_engine.create_table("cognee.cognee", "cognee_task_status", [ - dict(name = "data_id", type = "STRING"), - dict(name = "status", type = "STRING"), - dict(name = "created_at", type = "TIMESTAMP DEFAULT CURRENT_TIMESTAMP"), - ]) diff --git a/cognee/modules/tasks/get_task_status.py b/cognee/modules/tasks/get_task_status.py deleted file mode 100644 index 863ada164..000000000 --- a/cognee/modules/tasks/get_task_status.py +++ /dev/null @@ -1,19 +0,0 @@ -from cognee.infrastructure.databases.relational.config import get_relationaldb_config - -def get_task_status(data_ids: [str]): - relational_config = get_relationaldb_config() - db_engine = relational_config.database_engine - - formatted_data_ids = ", ".join([f"'{data_id}'" for data_id in data_ids]) - - datasets_statuses = db_engine.execute_query( - f"""SELECT data_id, status - FROM ( - SELECT data_id, status, ROW_NUMBER() OVER (PARTITION BY data_id ORDER BY created_at DESC) as rn - FROM cognee.cognee.cognee_task_status - WHERE data_id IN ({formatted_data_ids}) - ) t - WHERE rn = 1;""" - ) - - return { dataset["data_id"]: dataset["status"] for dataset in datasets_statuses } diff --git a/cognee/modules/tasks/update_task_status.py b/cognee/modules/tasks/update_task_status.py deleted file mode 100644 index 1efb3823e..000000000 --- a/cognee/modules/tasks/update_task_status.py +++ /dev/null @@ -1,6 +0,0 @@ -from cognee.infrastructure.databases.relational.config import get_relationaldb_config - -def update_task_status(data_id: str, status: str): - config = get_relationaldb_config() - db_engine = config.database_engine - db_engine.insert_data("cognee.cognee", "cognee_task_status", [dict(data_id = data_id, status = status)]) diff --git a/cognee/modules/topology/topology.py b/cognee/modules/topology/topology.py index c733763c2..9f8c82bee 100644 --- a/cognee/modules/topology/topology.py +++ b/cognee/modules/topology/topology.py @@ -3,10 +3,8 @@ import csv import json import logging -import os from typing import Any, Dict, List, Optional, Union, Type -import asyncio import aiofiles import pandas as pd from pydantic import BaseModel @@ -14,16 +12,10 @@ from pydantic import BaseModel from cognee.infrastructure.data.chunking.config import get_chunk_config from cognee.infrastructure.data.chunking.get_chunking_engine import get_chunk_engine from cognee.infrastructure.databases.graph.get_graph_engine import get_graph_engine -from cognee.infrastructure.databases.relational import get_relationaldb_config from cognee.infrastructure.files.utils.extract_text_from_file import extract_text_from_file from cognee.infrastructure.files.utils.guess_file_type import guess_file_type, FileTypeException -from cognee.modules.cognify.config import get_cognify_config -from cognee.base_config import get_base_config from cognee.modules.topology.topology_data_models import NodeModel -cognify_config = get_cognify_config() -base_config = get_base_config() - logger = logging.getLogger("topology") class TopologyEngine: @@ -136,53 +128,3 @@ class TopologyEngine: return except Exception as e: raise RuntimeError(f"Failed to add graph topology from {file_path}: {e}") from e - - - -async def main(): - # text = """Conservative PP in the lead in Spain, according to estimate - # An estimate has been published for Spain: - # - # Opposition leader Alberto Núñez Feijóo’s conservative People’s party (PP): 32.4% - # - # Spanish prime minister Pedro Sánchez’s Socialist party (PSOE): 30.2% - # - # The far-right Vox party: 10.4% - # - # In Spain, the right has sought to turn the European election into a referendum on Sánchez. - # - # Ahead of the vote, public attention has focused on a saga embroiling the prime minister’s wife, Begoña Gómez, who is being investigated over allegations of corruption and influence-peddling, which Sanchez has dismissed as politically-motivated and totally baseless.""" - # text_two = """The far-right Vox party: 10.4%""" - - from cognee.api.v1.add import add - dataset_name = "explanations" - print(os.getcwd()) - data_dir = os.path.abspath("../../.data") - print(os.getcwd()) - - await add(f"data://{data_dir}", dataset_name="explanations") - - relational_config = get_relationaldb_config() - db_engine = relational_config.database_engine - - - datasets = db_engine.get_datasets() - dataset_files =[] - - for added_dataset in datasets: - if dataset_name in added_dataset: - dataset_files.append((added_dataset, db_engine.get_files_metadata(added_dataset))) - - - - print(dataset_files) - topology_engine = TopologyEngine(infer=True) - file_path = "example_data.json" # or 'example_data.csv' - # - # # Adding graph topology - graph = await topology_engine.add_graph_topology(file_path, dataset_files=dataset_files) - print(graph) - -# Run the main function -if __name__ == "__main__": - asyncio.run(main()) diff --git a/cognee/modules/users/__init__.py b/cognee/modules/users/__init__.py index e69de29bb..2fe7c570c 100644 --- a/cognee/modules/users/__init__.py +++ b/cognee/modules/users/__init__.py @@ -0,0 +1 @@ +from .get_user_db import get_user_db diff --git a/cognee/modules/users/authentication/get_auth_backend.py b/cognee/modules/users/authentication/get_auth_backend.py new file mode 100644 index 000000000..3e5017ffa --- /dev/null +++ b/cognee/modules/users/authentication/get_auth_backend.py @@ -0,0 +1,24 @@ +import os +from functools import lru_cache +from fastapi_users import models +from fastapi_users.authentication import ( + AuthenticationBackend, + BearerTransport, + JWTStrategy, +) + +@lru_cache +def get_auth_backend(): + bearer_transport = BearerTransport(tokenUrl = "auth/jwt/login") + + def get_jwt_strategy() -> JWTStrategy[models.UP, models.ID]: + secret = os.getenv("FASTAPI_USERS_JWT_SECRET", "super_secret") + return JWTStrategy(secret, lifetime_seconds = 3600) + + auth_backend = AuthenticationBackend( + name = "jwt", + transport = bearer_transport, + get_strategy = get_jwt_strategy, + ) + + return auth_backend diff --git a/cognee/modules/users/authentication/methods/authenticate_user.py b/cognee/modules/users/authentication/methods/authenticate_user.py new file mode 100644 index 000000000..5095092f4 --- /dev/null +++ b/cognee/modules/users/authentication/methods/authenticate_user.py @@ -0,0 +1,21 @@ +from fastapi.security import OAuth2PasswordRequestForm +from fastapi_users.exceptions import UserNotExists +from cognee.infrastructure.databases.relational import get_relational_engine +from ...get_user_manager import get_user_manager_context +from ...get_user_db import get_user_db_context + +async def authenticate_user(email: str, password: str): + try: + relational_engine = get_relational_engine() + + async with relational_engine.get_async_session() as session: + async with get_user_db_context(session) as user_db: + async with get_user_manager_context(user_db) as user_manager: + credentials = OAuth2PasswordRequestForm(username = email, password = password) + user = await user_manager.authenticate(credentials) + if user is None or not user.is_active: + return None + return user + except UserNotExists as error: + print(f"User {email} doesn't exist") + raise error diff --git a/cognee/modules/users/get_fastapi_users.py b/cognee/modules/users/get_fastapi_users.py new file mode 100644 index 000000000..81abe3551 --- /dev/null +++ b/cognee/modules/users/get_fastapi_users.py @@ -0,0 +1,15 @@ +import uuid +from functools import lru_cache +from fastapi_users import FastAPIUsers +from .authentication.get_auth_backend import get_auth_backend + +from .get_user_manager import get_user_manager +from .models.User import User + +@lru_cache +def get_fastapi_users(): + auth_backend = get_auth_backend() + + fastapi_users = FastAPIUsers[User, uuid.UUID](get_user_manager, [auth_backend]) + + return fastapi_users diff --git a/cognee/modules/users/get_user_db.py b/cognee/modules/users/get_user_db.py new file mode 100644 index 000000000..fb99defef --- /dev/null +++ b/cognee/modules/users/get_user_db.py @@ -0,0 +1,10 @@ +# from fastapi import Depends +from fastapi_users.db import SQLAlchemyUserDatabase +# from cognee.infrastructure.databases.relational import get_relational_engine +from .models.User import User + +async def get_user_db(session): + yield SQLAlchemyUserDatabase(session, User) + +from contextlib import asynccontextmanager +get_user_db_context = asynccontextmanager(get_user_db) diff --git a/cognee/modules/users/get_user_manager.py b/cognee/modules/users/get_user_manager.py new file mode 100644 index 000000000..b9d69e947 --- /dev/null +++ b/cognee/modules/users/get_user_manager.py @@ -0,0 +1,32 @@ +import os +import uuid +from typing import Optional +from fastapi import Depends, Request +from fastapi_users import BaseUserManager, UUIDIDMixin +from fastapi_users.db import SQLAlchemyUserDatabase + +from .get_user_db import get_user_db +from .models import User + +class UserManager(UUIDIDMixin, BaseUserManager[User, uuid.UUID]): + reset_password_token_secret = os.getenv("FASTAPI_USERS_RESET_PASSWORD_TOKEN_SECRET", "super_secret") + verification_token_secret = os.getenv("FASTAPI_USERS_VERIFICATION_TOKEN_SECRET", "super_secret") + + async def on_after_register(self, user: User, request: Optional[Request] = None): + print(f"User {user.id} has registered.") + + async def on_after_forgot_password( + self, user: User, token: str, request: Optional[Request] = None + ): + print(f"User {user.id} has forgot their password. Reset token: {token}") + + async def on_after_request_verify( + self, user: User, token: str, request: Optional[Request] = None + ): + print(f"Verification requested for user {user.id}. Verification token: {token}") + +async def get_user_manager(user_db: SQLAlchemyUserDatabase = Depends(get_user_db)): + yield UserManager(user_db) + +from contextlib import asynccontextmanager +get_user_manager_context = asynccontextmanager(get_user_manager) diff --git a/cognee/modules/users/memory/__init__.py b/cognee/modules/users/memory/__init__.py deleted file mode 100644 index 736ec61f6..000000000 --- a/cognee/modules/users/memory/__init__.py +++ /dev/null @@ -1,3 +0,0 @@ -from .is_existing_memory import is_existing_memory -from .register_memory_for_user import register_memory_for_user -from .create_information_points import create_information_points diff --git a/cognee/modules/users/memory/create_information_points.py b/cognee/modules/users/memory/create_information_points.py deleted file mode 100644 index 748f70706..000000000 --- a/cognee/modules/users/memory/create_information_points.py +++ /dev/null @@ -1,23 +0,0 @@ -import uuid -from typing import List -from qdrant_client.models import PointStruct -from cognee.infrastructure.databases.vector.get_vector_database import get_vector_database -from cognee.infrastructure.llm.openai.openai_tools import async_get_embedding_with_backoff - -async def create_information_points(memory_name: str, payload: List[str]): - vector_db = get_vector_database() - - data_points = list() - for point in map(create_data_point, payload): - data_points.append(await point) - - return await vector_db.create_data_points(memory_name, data_points) - -async def create_data_point(data: str) -> PointStruct: - return PointStruct( - id = str(uuid.uuid4()), - vector = await async_get_embedding_with_backoff(data), - payload = { - "raw": data, - } - ) diff --git a/cognee/modules/users/memory/is_existing_memory.py b/cognee/modules/users/memory/is_existing_memory.py deleted file mode 100644 index 76b7fe34b..000000000 --- a/cognee/modules/users/memory/is_existing_memory.py +++ /dev/null @@ -1,6 +0,0 @@ -from cognee.infrastructure.databases.relational.get_database import get_database - -async def is_existing_memory(memory_name: str): - memory = await (get_database().get_memory_by_name(memory_name)) - - return memory is not None diff --git a/cognee/modules/users/memory/register_memory_for_user.py b/cognee/modules/users/memory/register_memory_for_user.py deleted file mode 100644 index e8bb29de7..000000000 --- a/cognee/modules/users/memory/register_memory_for_user.py +++ /dev/null @@ -1,4 +0,0 @@ -from cognee.infrastructure.databases.relational.get_database import get_database - -def register_memory_for_user(user_id: str, memory_name: str): - return get_database().add_memory(user_id, memory_name) diff --git a/cognee/modules/users/methods/__init__.py b/cognee/modules/users/methods/__init__.py new file mode 100644 index 000000000..bb962a227 --- /dev/null +++ b/cognee/modules/users/methods/__init__.py @@ -0,0 +1,3 @@ +from .create_user import create_user +from .get_default_user import get_default_user +from .create_default_user import create_default_user diff --git a/cognee/modules/users/methods/create_default_user.py b/cognee/modules/users/methods/create_default_user.py new file mode 100644 index 000000000..3fae3c10f --- /dev/null +++ b/cognee/modules/users/methods/create_default_user.py @@ -0,0 +1,20 @@ +import hashlib +from .create_user import create_user + +async def create_default_user(): + default_user_email = "default_user@example.com" + default_user_password = "default_password" + + user = await create_user( + email = default_user_email, + password = await hash_password(default_user_password), + is_superuser = True, + is_active = True, + is_verified = True, + auto_login = True, + ) + + return user + +async def hash_password(password: str) -> str: + return hashlib.sha256(password.encode()).hexdigest() diff --git a/cognee/modules/users/methods/create_user.py b/cognee/modules/users/methods/create_user.py new file mode 100644 index 000000000..3145fd799 --- /dev/null +++ b/cognee/modules/users/methods/create_user.py @@ -0,0 +1,38 @@ +from fastapi_users.exceptions import UserAlreadyExists +from cognee.infrastructure.databases.relational import get_relational_engine +from ..get_user_manager import get_user_manager_context +from ..get_user_db import get_user_db_context +from ..models.User import UserCreate + +async def create_user( + email: str, + password: str, + is_superuser: bool = False, + is_active: bool = True, + is_verified: bool = False, + auto_login: bool = False, +): + try: + relational_engine = get_relational_engine() + + async with relational_engine.get_async_session() as session: + async with get_user_db_context(session) as user_db: + async with get_user_manager_context(user_db) as user_manager: + user = await user_manager.create( + UserCreate( + email = email, + password = password, + is_superuser = is_superuser, + is_active = is_active, + is_verified = is_verified, + ) + ) + + if auto_login: + await session.refresh(user) + + return user + print(f"User created: {user.email}") + except UserAlreadyExists as error: + print(f"User {email} already exists") + raise error diff --git a/cognee/modules/users/methods/get_default_user.py b/cognee/modules/users/methods/get_default_user.py new file mode 100644 index 000000000..72faef3c8 --- /dev/null +++ b/cognee/modules/users/methods/get_default_user.py @@ -0,0 +1,16 @@ +from sqlalchemy.orm import joinedload +from sqlalchemy.future import select +from cognee.modules.users.models import User +from cognee.infrastructure.databases.relational import get_relational_engine + +async def get_default_user(): + db_engine = get_relational_engine() + + async with db_engine.get_async_session() as session: + query = select(User).options(joinedload(User.groups))\ + .where(User.email == "default_user@example.com") + + result = await session.execute(query) + user = result.scalars().first() + + return user diff --git a/cognee/modules/users/models/ACL.py b/cognee/modules/users/models/ACL.py new file mode 100644 index 000000000..2bcffcc92 --- /dev/null +++ b/cognee/modules/users/models/ACL.py @@ -0,0 +1,25 @@ +from uuid import uuid4 +from datetime import datetime, timezone +from sqlalchemy.orm import relationship, Mapped +from sqlalchemy import Column, ForeignKey, DateTime, UUID +from cognee.infrastructure.databases.relational import Base +from .ACLResources import ACLResources + +class ACL(Base): + __tablename__ = "acls" + + id = Column(UUID(as_uuid = True), primary_key = True, default = uuid4) + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + updated_at = Column(DateTime(timezone = True), onupdate = lambda: datetime.now(timezone.utc)) + + principal_id = Column(UUID(as_uuid = True), ForeignKey("principals.id")) + permission_id = Column(UUID(as_uuid = True), ForeignKey("permissions.id")) + + principal = relationship("Principal") + permission = relationship("Permission") + resources: Mapped[list["Resource"]] = relationship( + "Resource", + secondary = ACLResources.__tablename__, + back_populates = "acls", + ) diff --git a/cognee/modules/users/models/ACLResources.py b/cognee/modules/users/models/ACLResources.py new file mode 100644 index 000000000..73d0a22fc --- /dev/null +++ b/cognee/modules/users/models/ACLResources.py @@ -0,0 +1,11 @@ +from datetime import datetime, timezone +from sqlalchemy import Column, ForeignKey, UUID, DateTime +from cognee.infrastructure.databases.relational import Base + +class ACLResources(Base): + __tablename__ = "acl_resources" + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + + acl_id = Column(UUID(as_uuid = True), ForeignKey("acls.id"), primary_key = True) + resource_id = Column(UUID(as_uuid = True), ForeignKey("resources.id"), primary_key = True) diff --git a/cognee/modules/users/models/Group.py b/cognee/modules/users/models/Group.py new file mode 100644 index 000000000..19b93443d --- /dev/null +++ b/cognee/modules/users/models/Group.py @@ -0,0 +1,21 @@ +from sqlalchemy.orm import relationship, Mapped +from sqlalchemy import Column, String, ForeignKey, UUID +from .Principal import Principal +from .UserGroup import UserGroup + +class Group(Principal): + __tablename__ = "groups" + + id = Column(UUID(as_uuid = True), ForeignKey("principals.id"), primary_key = True) + + name = Column(String, unique = True, nullable = False, index = True) + + users: Mapped[list["User"]] = relationship( + "User", + secondary = UserGroup.__tablename__, + back_populates = "groups", + ) + + __mapper_args__ = { + "polymorphic_identity": "group", + } diff --git a/cognee/modules/users/models/Permission.py b/cognee/modules/users/models/Permission.py new file mode 100644 index 000000000..44d719f99 --- /dev/null +++ b/cognee/modules/users/models/Permission.py @@ -0,0 +1,17 @@ +from uuid import uuid4 +from datetime import datetime, timezone +# from sqlalchemy.orm import relationship +from sqlalchemy import Column, DateTime, UUID, String +from cognee.infrastructure.databases.relational import Base + +class Permission(Base): + __tablename__ = "permissions" + + id = Column(UUID, primary_key = True, index = True, default = uuid4) + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + updated_at = Column(DateTime(timezone = True), onupdate = lambda: datetime.now(timezone.utc)) + + name = Column(String, unique = True, nullable = False, index = True) + + # acls = relationship("ACL", back_populates = "permission") diff --git a/cognee/modules/users/models/Principal.py b/cognee/modules/users/models/Principal.py new file mode 100644 index 000000000..b5f14a428 --- /dev/null +++ b/cognee/modules/users/models/Principal.py @@ -0,0 +1,19 @@ +from uuid import uuid4 +from datetime import datetime, timezone +from sqlalchemy import Column, String, DateTime, UUID +from cognee.infrastructure.databases.relational import Base + +class Principal(Base): + __tablename__ = "principals" + + id = Column(UUID(as_uuid = True), primary_key = True, index = True, default = uuid4) + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + updated_at = Column(DateTime(timezone = True), onupdate = lambda: datetime.now(timezone.utc)) + + type = Column(String, nullable = False) + + __mapper_args__ = { + "polymorphic_identity": "principal", + "polymorphic_on": "type", + } diff --git a/cognee/modules/users/models/Resource.py b/cognee/modules/users/models/Resource.py new file mode 100644 index 000000000..bc9e14023 --- /dev/null +++ b/cognee/modules/users/models/Resource.py @@ -0,0 +1,18 @@ +from uuid import uuid4 +from datetime import datetime, timezone +from sqlalchemy.orm import relationship +from sqlalchemy import Column, DateTime, UUID +from cognee.infrastructure.databases.relational import Base +from .ACLResources import ACLResources + +class Resource(Base): + __tablename__ = "resources" + + id = Column(UUID(as_uuid = True), primary_key = True, default = uuid4) + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + updated_at = Column(DateTime(timezone = True), onupdate = lambda: datetime.now(timezone.utc)) + + resource_id = Column(UUID(as_uuid = True), nullable = False) + + acls = relationship("ACL", secondary = ACLResources.__tablename__, back_populates = "resources") diff --git a/cognee/modules/users/models/User.py b/cognee/modules/users/models/User.py new file mode 100644 index 000000000..4e792bbd5 --- /dev/null +++ b/cognee/modules/users/models/User.py @@ -0,0 +1,33 @@ +from uuid import UUID as uuid_UUID +from sqlalchemy import ForeignKey, UUID, Column +from sqlalchemy.orm import relationship, Mapped +from fastapi_users.db import SQLAlchemyBaseUserTableUUID +from .Principal import Principal +from .UserGroup import UserGroup + +class User(SQLAlchemyBaseUserTableUUID, Principal): + __tablename__ = "users" + + id = Column(UUID(as_uuid = True), ForeignKey("principals.id"), primary_key = True) + + groups: Mapped[list["Group"]] = relationship( + secondary = UserGroup.__tablename__, + back_populates = "users", + ) + + __mapper_args__ = { + "polymorphic_identity": "user", + } + + +# Keep these schemas in sync with User model +from fastapi_users import schemas + +class UserRead(schemas.BaseUser[uuid_UUID]): + groups: list[uuid_UUID] # Add groups attribute + +class UserCreate(schemas.BaseUserCreate): + pass + +class UserUpdate(schemas.BaseUserUpdate): + pass diff --git a/cognee/modules/users/models/UserGroup.py b/cognee/modules/users/models/UserGroup.py new file mode 100644 index 000000000..0bb6cf657 --- /dev/null +++ b/cognee/modules/users/models/UserGroup.py @@ -0,0 +1,11 @@ +from datetime import datetime, timezone +from sqlalchemy import Column, ForeignKey, DateTime, UUID +from cognee.infrastructure.databases.relational import Base + +class UserGroup(Base): + __tablename__ = "user_groups" + + created_at = Column(DateTime(timezone = True), default = lambda: datetime.now(timezone.utc)) + + user_id = Column(UUID(as_uuid = True), ForeignKey("users.id"), primary_key = True) + group_id = Column(UUID(as_uuid = True), ForeignKey("groups.id"), primary_key = True) diff --git a/cognee/modules/users/models/__init__.py b/cognee/modules/users/models/__init__.py new file mode 100644 index 000000000..7dc1bf8ca --- /dev/null +++ b/cognee/modules/users/models/__init__.py @@ -0,0 +1,5 @@ +from .User import User +from .Group import Group +from .Resource import Resource +from .Permission import Permission +from .ACL import ACL diff --git a/cognee/modules/users/permissions/methods/__init__.py b/cognee/modules/users/permissions/methods/__init__.py new file mode 100644 index 000000000..bc4c475dc --- /dev/null +++ b/cognee/modules/users/permissions/methods/__init__.py @@ -0,0 +1,3 @@ +from .check_permissions_on_documents import check_permissions_on_documents +from .give_permission_on_document import give_permission_on_document +from .get_document_ids_for_user import get_document_ids_for_user diff --git a/cognee/modules/users/permissions/methods/check_permissions_on_documents.py b/cognee/modules/users/permissions/methods/check_permissions_on_documents.py new file mode 100644 index 000000000..01e04ae26 --- /dev/null +++ b/cognee/modules/users/permissions/methods/check_permissions_on_documents.py @@ -0,0 +1,40 @@ +import logging +from uuid import UUID +from sqlalchemy import select +from sqlalchemy.orm import joinedload +from cognee.infrastructure.databases.relational import get_relational_engine + +from ...models.User import User +from ...models.ACL import ACL + +logger = logging.getLogger(__name__) + +class PermissionDeniedException(Exception): + def __init__(self, message: str): + self.message = message + super().__init__(self.message) + + +async def check_permissions_on_documents(user: User, permission_type: str, document_ids: list[UUID]): + try: + user_group_ids = [group.id for group in user.groups] + + db_engine = get_relational_engine() + + async with db_engine.get_async_session() as session: + result = await session.execute( + select(ACL) + .join(ACL.permission) + .options(joinedload(ACL.resources)) + .where(ACL.principal_id.in_([user.id, *user_group_ids])) + .where(ACL.permission.has(name = permission_type)) + ) + acls = result.unique().scalars().all() + resource_ids = [resource.resource_id for acl in acls for resource in acl.resources] + has_permissions = all(document_id in resource_ids for document_id in document_ids) + + if not has_permissions: + raise PermissionDeniedException(f"User {user.username} does not have {permission_type} permission on documents") + except Exception as error: + logger.error("Error checking permissions on documents: %s", str(error)) + raise diff --git a/cognee/modules/users/permissions/methods/get_document_ids_for_user.py b/cognee/modules/users/permissions/methods/get_document_ids_for_user.py new file mode 100644 index 000000000..79736db0f --- /dev/null +++ b/cognee/modules/users/permissions/methods/get_document_ids_for_user.py @@ -0,0 +1,21 @@ +from uuid import UUID +from sqlalchemy import select +from cognee.infrastructure.databases.relational import get_relational_engine +from ...models import ACL, Resource, Permission + +async def get_document_ids_for_user(user_id: UUID) -> list[str]: + db_engine = get_relational_engine() + + async with db_engine.get_async_session() as session: + async with session.begin(): + document_ids = (await session.scalars( + select(Resource.resource_id) + .join(ACL.resources) + .join(ACL.permission) + .where( + ACL.principal_id == user_id, + Permission.name == "read", + ) + )).all() + + return document_ids diff --git a/cognee/modules/users/permissions/methods/give_permission_on_document.py b/cognee/modules/users/permissions/methods/give_permission_on_document.py new file mode 100644 index 000000000..65516f7cd --- /dev/null +++ b/cognee/modules/users/permissions/methods/give_permission_on_document.py @@ -0,0 +1,38 @@ +from sqlalchemy.future import select +from cognee.infrastructure.databases.relational import get_relational_engine +from ...models import User, ACL, Resource, Permission + +async def give_permission_on_document( + user: User, + document_id: str, + permission_name: str, +): + db_engine = get_relational_engine() + + document_resource = Resource(resource_id = document_id) + + async with db_engine.get_async_session() as session: + permission = (await session.execute(select(Permission).filter(Permission.name == permission_name))).scalars().first() + + if permission is None: + permission = Permission(name = permission_name) + + acl = ACL(principal_id = user.id) + acl.permission = permission + acl.resources.append(document_resource) + + session.add(acl) + + await session.commit() + + + # if user.is_superuser: + # permission = "all_permissions" # Example permission, change as needed + + # acl_entry = ACL( + # document_id=document_id, + # user_id=user.id, + # permission=permission + # ) + # session.add(acl_entry) + # await session.commit() \ No newline at end of file diff --git a/cognee/tests/test_library.py b/cognee/tests/test_library.py index 9580b5f5d..1480020d5 100755 --- a/cognee/tests/test_library.py +++ b/cognee/tests/test_library.py @@ -27,42 +27,42 @@ async def main(): # In principle, a non-quantum (classical) computer can solve the same computational problems as a quantum computer, given enough time. Quantum advantage comes in the form of time complexity rather than computability, and quantum complexity theory shows that some quantum algorithms for carefully selected tasks require exponentially fewer computational steps than the best known non-quantum algorithms. Such tasks can in theory be solved on a large-scale quantum computer whereas classical computers would not finish computations in any reasonable amount of time. However, quantum speedup is not universal or even typical across computational tasks, since basic tasks such as sorting are proven to not allow any asymptotic quantum speedup. Claims of quantum supremacy have drawn significant attention to the discipline, but are demonstrated on contrived tasks, while near-term practical use cases remain limited. # """ - text = """A large language model (LLM) is a language model notable for its ability to achieve general-purpose language generation and other natural language processing tasks such as classification. LLMs acquire these abilities by learning statistical relationships from text documents during a computationally intensive self-supervised and semi-supervised training process. LLMs can be used for text generation, a form of generative AI, by taking an input text and repeatedly predicting the next token or word. - LLMs are artificial neural networks. The largest and most capable, as of March 2024, are built with a decoder-only transformer-based architecture while some recent implementations are based on other architectures, such as recurrent neural network variants and Mamba (a state space model). - Up to 2020, fine tuning was the only way a model could be adapted to be able to accomplish specific tasks. Larger sized models, such as GPT-3, however, can be prompt-engineered to achieve similar results.[6] They are thought to acquire knowledge about syntax, semantics and "ontology" inherent in human language corpora, but also inaccuracies and biases present in the corpora. - Some notable LLMs are OpenAI's GPT series of models (e.g., GPT-3.5 and GPT-4, used in ChatGPT and Microsoft Copilot), Google's PaLM and Gemini (the latter of which is currently used in the chatbot of the same name), xAI's Grok, Meta's LLaMA family of open-source models, Anthropic's Claude models, Mistral AI's open source models, and Databricks' open source DBRX. - """ + # text = """A large language model (LLM) is a language model notable for its ability to achieve general-purpose language generation and other natural language processing tasks such as classification. LLMs acquire these abilities by learning statistical relationships from text documents during a computationally intensive self-supervised and semi-supervised training process. LLMs can be used for text generation, a form of generative AI, by taking an input text and repeatedly predicting the next token or word. + # LLMs are artificial neural networks. The largest and most capable, as of March 2024, are built with a decoder-only transformer-based architecture while some recent implementations are based on other architectures, such as recurrent neural network variants and Mamba (a state space model). + # Up to 2020, fine tuning was the only way a model could be adapted to be able to accomplish specific tasks. Larger sized models, such as GPT-3, however, can be prompt-engineered to achieve similar results.[6] They are thought to acquire knowledge about syntax, semantics and "ontology" inherent in human language corpora, but also inaccuracies and biases present in the corpora. + # Some notable LLMs are OpenAI's GPT series of models (e.g., GPT-3.5 and GPT-4, used in ChatGPT and Microsoft Copilot), Google's PaLM and Gemini (the latter of which is currently used in the chatbot of the same name), xAI's Grok, Meta's LLaMA family of open-source models, Anthropic's Claude models, Mistral AI's open source models, and Databricks' open source DBRX. + # """ - await cognee.add([text], dataset_name) + # await cognee.add([text], dataset_name) - await cognee.cognify([dataset_name], root_node_id = "ROOT") + await cognee.cognify([dataset_name]) from cognee.infrastructure.databases.vector import get_vector_engine vector_engine = get_vector_engine() random_node = (await vector_engine.search("entities", "AI"))[0] random_node_name = random_node.payload["name"] - search_results = await cognee.search("SIMILARITY", { "query": random_node_name }) + search_results = await cognee.search("SIMILARITY", params = { "query": random_node_name }) assert len(search_results) != 0, "The search results list is empty." print("\n\nExtracted sentences are:\n") for result in search_results: print(f"{result}\n") - search_results = await cognee.search("TRAVERSE", { "query": random_node_name }) + search_results = await cognee.search("TRAVERSE", params = { "query": random_node_name }) assert len(search_results) != 0, "The search results list is empty." print("\n\nExtracted sentences are:\n") for result in search_results: print(f"{result}\n") - search_results = await cognee.search("SUMMARY", { "query": random_node_name }) + search_results = await cognee.search("SUMMARY", params = { "query": random_node_name }) assert len(search_results) != 0, "Query related summaries don't exist." print("\n\nQuery related summaries exist:\n") for result in search_results: print(f"{result}\n") - search_results = await cognee.search("ADJACENT", { "query": random_node_name }) + search_results = await cognee.search("ADJACENT", params = { "query": random_node_name }) assert len(search_results) != 0, "Large language model query found no neighbours." - print("\n\Large language model query found neighbours.\n") + print("\n\nLarge language model query found neighbours.\n") for result in search_results: print(f"{result}\n") diff --git a/docker-compose.yml b/docker-compose.yml index 21f6903b7..2ef05170a 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -61,7 +61,24 @@ services: networks: - cognee-network + postgres: + image: postgres:latest + container_name: postgres + environment: + POSTGRES_USER: cognee + POSTGRES_PASSWORD: cognee + POSTGRES_DB: cognee_db + volumes: + - postgres_data:/var/lib/postgresql/data + ports: + - 5432:5432 + networks: + - cognee-network + networks: cognee-network: name: 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"wheel-0.44.0-py3-none-any.whl", hash = "sha256:2376a90c98cc337d18623527a97c31797bd02bad0033d41547043a1cbfbe448f"}, + {file = "wheel-0.44.0.tar.gz", hash = "sha256:a29c3f2817e95ab89aa4660681ad547c0e9547f20e75b0562fe7723c9a2a9d49"}, ] [package.extras] @@ -7350,4 +7716,4 @@ weaviate = ["weaviate-client"] [metadata] lock-version = "2.0" python-versions = ">=3.9.0,<3.12" -content-hash = "18134754d15827b8bf80691fa823aae83b8d5cc8a7461ae70f8328d33b5ddb2e" +content-hash = "943c25a4cb79907260cef7b8f71edc81a73ee79960ea43e75016a7e09c9022df" diff --git a/pyproject.toml b/pyproject.toml index ee26551f9..489348fa7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,10 +26,10 @@ fastapi = "^0.109.2" uvicorn = "0.22.0" boto3 = "^1.26.125" gunicorn = "^20.1.0" -sqlalchemy = "^2.0.21" +sqlalchemy = "2.0.21" instructor = "1.3.5" networkx = "^3.2.1" -debugpy = "^1.8.0" +debugpy = "1.8.2" pyarrow = "15.0.0" pylint = "^3.0.3" aiosqlite = "^0.20.0" @@ -38,7 +38,7 @@ greenlet = "^3.0.3" ruff = "^0.2.2" filetype = "^1.2.0" nltk = "^3.8.1" -dlt = "0.5.1" +dlt = {extras = ["postgres"], version = "^0.5.2"} duckdb = {version = "^0.10.0", extras = ["dlt"]} overrides = "^7.7.0" aiofiles = "^23.2.1" @@ -50,7 +50,7 @@ weaviate-client = "4.6.7" scikit-learn = "^1.5.0" fastembed = "0.2.7" pypdf = "^4.1.0" -neo4j = "5.20.0" +neo4j = "^5.20.0" jinja2 = "^3.1.3" matplotlib = "^3.8.3" structlog = "^24.1.0" @@ -69,6 +69,8 @@ pydantic-settings = "^2.2.1" anthropic = "^0.26.1" pdfplumber = "^0.11.1" sentry-sdk = {extras = ["fastapi"], version = "^2.9.0"} +fastapi-users = { version = "*", extras = ["sqlalchemy"] } +asyncpg = "^0.29.0"