From 7af7e3834fec5bd76e5238b232bf6ae73064e54b Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Mon, 21 Jul 2025 21:06:23 +0200 Subject: [PATCH] feat: Cog 2340 remove graphistry (#1080) ## Description ## DCO Affirmation I affirm that all code in every commit of this pull request conforms to the terms of the Topoteretes Developer Certificate of Origin. --------- Co-authored-by: Igor Ilic --- .github/actions/cognee_setup/action.yml | 8 +- .github/workflows/basic_tests.yml | 10 - .github/workflows/e2e_tests.yml | 4 - .github/workflows/examples_tests.yml | 8 - .github/workflows/python_version_tests.yml | 7 - .github/workflows/reusable_notebook.yml | 6 - .github/workflows/test_ollama.yml | 2 - cognee-starter-kit/README.md | 9 - cognee/api/client.py | 4 +- cognee/api/v1/config/config.py | 12 - cognee/base_config.py | 2 - cognee/shared/utils.py | 2 - .../tests/unit/processing/utils/utils_test.py | 2 - poetry.lock | 1614 +++++++++-------- pyproject.toml | 1 - uv.lock | 1084 ++++++----- 16 files changed, 1362 insertions(+), 1413 deletions(-) diff --git a/.github/actions/cognee_setup/action.yml b/.github/actions/cognee_setup/action.yml index 326ea4b4a..8a3bbb7ef 100644 --- a/.github/actions/cognee_setup/action.yml +++ b/.github/actions/cognee_setup/action.yml @@ -21,11 +21,13 @@ runs: run: | python -m pip install --upgrade pip pip install poetry - + - name: Rebuild Poetry lock file shell: bash - run: poetry lock - + run: | + rm poetry.lock + poetry lock + - name: Install dependencies shell: bash run: poetry install --no-interaction -E api -E docs -E evals -E gemini -E codegraph -E ollama -E dev -E neo4j diff --git a/.github/workflows/basic_tests.yml b/.github/workflows/basic_tests.yml index 456bc8c88..a2bcd630d 100644 --- a/.github/workflows/basic_tests.yml +++ b/.github/workflows/basic_tests.yml @@ -8,10 +8,6 @@ on: type: string default: '3.11.x' secrets: - GRAPHISTRY_USERNAME: - required: true - GRAPHISTRY_PASSWORD: - required: true LLM_PROVIDER: required: true LLM_MODEL: @@ -125,9 +121,6 @@ jobs: name: Run Simple Examples runs-on: ubuntu-22.04 env: - GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} - GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} - LLM_PROVIDER: openai LLM_MODEL: ${{ secrets.LLM_MODEL }} LLM_ENDPOINT: ${{ secrets.LLM_ENDPOINT }} @@ -157,9 +150,6 @@ jobs: name: Run Basic Graph Tests runs-on: ubuntu-22.04 env: - GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} - GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} - LLM_PROVIDER: openai LLM_MODEL: ${{ secrets.LLM_MODEL }} LLM_ENDPOINT: ${{ secrets.LLM_ENDPOINT }} diff --git a/.github/workflows/e2e_tests.yml b/.github/workflows/e2e_tests.yml index 05c2b055e..4e50cd325 100644 --- a/.github/workflows/e2e_tests.yml +++ b/.github/workflows/e2e_tests.yml @@ -26,10 +26,6 @@ on: required: true OPENAI_API_KEY: required: true - GRAPHISTRY_USERNAME: - required: true - GRAPHISTRY_PASSWORD: - required: true AWS_ACCESS_KEY_ID: required: true AWS_SECRET_ACCESS_KEY: diff --git a/.github/workflows/examples_tests.yml b/.github/workflows/examples_tests.yml index 809e87e0b..796faf2e0 100644 --- a/.github/workflows/examples_tests.yml +++ b/.github/workflows/examples_tests.yml @@ -20,8 +20,6 @@ jobs: env: LLM_API_KEY: ${{ secrets.OPENAI_API_KEY }} OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }} - GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} - GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} run: poetry run python ./examples/python/multimedia_example.py test-eval-example: @@ -51,8 +49,6 @@ jobs: EMBEDDING_ENDPOINT: ${{ secrets.EMBEDDING_ENDPOINT }} EMBEDDING_API_KEY: ${{ secrets.EMBEDDING_API_KEY }} EMBEDDING_API_VERSION: ${{ secrets.EMBEDDING_API_VERSION }} - GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} - GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} run: poetry run python ./cognee/eval_framework/run_eval.py test-descriptive-metrics: @@ -78,8 +74,6 @@ jobs: EMBEDDING_ENDPOINT: ${{ secrets.EMBEDDING_ENDPOINT }} EMBEDDING_API_KEY: ${{ secrets.EMBEDDING_API_KEY }} EMBEDDING_API_VERSION: ${{ secrets.EMBEDDING_API_VERSION }} - GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} - GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} run: poetry run python ./cognee/tests/tasks/descriptive_metrics/networkx_metrics_test.py @@ -98,8 +92,6 @@ jobs: - name: Run Dynamic Steps Tests env: OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }} - GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} - GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} LLM_MODEL: ${{ secrets.LLM_MODEL }} LLM_ENDPOINT: ${{ secrets.LLM_ENDPOINT }} LLM_API_KEY: ${{ secrets.LLM_API_KEY }} diff --git a/.github/workflows/python_version_tests.yml b/.github/workflows/python_version_tests.yml index fa749a864..6db67d115 100644 --- a/.github/workflows/python_version_tests.yml +++ b/.github/workflows/python_version_tests.yml @@ -8,10 +8,6 @@ on: type: string default: '["3.10.x", "3.11.x", "3.12.x"]' secrets: - GRAPHISTRY_USERNAME: - required: true - GRAPHISTRY_PASSWORD: - required: true LLM_PROVIDER: required: true LLM_MODEL: @@ -96,9 +92,6 @@ jobs: shell: bash env: PYTHONUTF8: 1 - GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} - GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} - LLM_PROVIDER: openai LLM_MODEL: ${{ secrets.LLM_MODEL }} LLM_ENDPOINT: ${{ secrets.LLM_ENDPOINT }} diff --git a/.github/workflows/reusable_notebook.yml b/.github/workflows/reusable_notebook.yml index f11694265..4f97476ef 100644 --- a/.github/workflows/reusable_notebook.yml +++ b/.github/workflows/reusable_notebook.yml @@ -8,10 +8,6 @@ on: required: true type: string secrets: - GRAPHISTRY_USERNAME: - required: true - GRAPHISTRY_PASSWORD: - required: true #LLM_MODEL: # required: true #LLM_ENDPOINT: @@ -67,8 +63,6 @@ jobs: EMBEDDING_ENDPOINT: ${{ secrets.EMBEDDING_ENDPOINT }} EMBEDDING_API_KEY: ${{ secrets.EMBEDDING_API_KEY }} EMBEDDING_API_VERSION: ${{ secrets.EMBEDDING_API_VERSION }} - GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} - GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} run: | poetry run jupyter nbconvert \ --to notebook \ diff --git a/.github/workflows/test_ollama.yml b/.github/workflows/test_ollama.yml index 7ce29d82a..8f85efadc 100644 --- a/.github/workflows/test_ollama.yml +++ b/.github/workflows/test_ollama.yml @@ -91,8 +91,6 @@ jobs: - name: Run example test env: OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }} - GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} - GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} PYTHONFAULTHANDLER: 1 LLM_PROVIDER: "ollama" LLM_API_KEY: "ollama" diff --git a/cognee-starter-kit/README.md b/cognee-starter-kit/README.md index fab9142c1..c265e278e 100644 --- a/cognee-starter-kit/README.md +++ b/cognee-starter-kit/README.md @@ -80,15 +80,6 @@ cognee provides a visualize_graph function that will render the graph for you. ) await visualize_graph(graph_file_path) ``` -If you want to use tools like Graphistry for graph visualization: -- create an account and API key from https://www.graphistry.com -- add the following environment variables to `.env` file: -``` -GRAPHISTRY_USERNAME="" -GRAPHISTRY_PASSWORD="" -``` -Note: `GRAPHISTRY_PASSWORD` is API key. - # What will you build with cognee? diff --git a/cognee/api/client.py b/cognee/api/client.py index 960677f78..4f12e2ece 100644 --- a/cognee/api/client.py +++ b/cognee/api/client.py @@ -70,7 +70,9 @@ app = FastAPI(debug=app_environment != "prod", lifespan=lifespan) # Read allowed origins from environment variable (comma-separated) CORS_ALLOWED_ORIGINS = os.getenv("CORS_ALLOWED_ORIGINS") if CORS_ALLOWED_ORIGINS: - allowed_origins = [origin.strip() for origin in CORS_ALLOWED_ORIGINS.split(",") if origin.strip()] + allowed_origins = [ + origin.strip() for origin in CORS_ALLOWED_ORIGINS.split(",") if origin.strip() + ] else: allowed_origins = [] # Block all except explicitly set origins diff --git a/cognee/api/v1/config/config.py b/cognee/api/v1/config/config.py index 8cfed61ed..b3113e8c7 100644 --- a/cognee/api/v1/config/config.py +++ b/cognee/api/v1/config/config.py @@ -182,15 +182,3 @@ class config: def set_vector_db_url(db_url: str): vector_db_config = get_vectordb_config() vector_db_config.vector_db_url = db_url - - @staticmethod - def set_graphistry_config(graphistry_config: dict[str, str]): - base_config = get_base_config() - - if "username" not in graphistry_config or "password" not in graphistry_config: - raise InvalidValueError( - message="graphistry_config dictionary must contain 'username' and 'password' keys." - ) - - base_config.graphistry_username = graphistry_config.get("username") - base_config.graphistry_password = graphistry_config.get("password") diff --git a/cognee/base_config.py b/cognee/base_config.py index 6806a4bfb..5081acaff 100644 --- a/cognee/base_config.py +++ b/cognee/base_config.py @@ -10,8 +10,6 @@ class BaseConfig(BaseSettings): data_root_directory: str = get_absolute_path(".data_storage") system_root_directory: str = get_absolute_path(".cognee_system") monitoring_tool: object = Observer.LANGFUSE - graphistry_username: Optional[str] = os.getenv("GRAPHISTRY_USERNAME") - graphistry_password: Optional[str] = os.getenv("GRAPHISTRY_PASSWORD") langfuse_public_key: Optional[str] = os.getenv("LANGFUSE_PUBLIC_KEY") langfuse_secret_key: Optional[str] = os.getenv("LANGFUSE_SECRET_KEY") langfuse_host: Optional[str] = os.getenv("LANGFUSE_HOST") diff --git a/cognee/shared/utils.py b/cognee/shared/utils.py index 8b0c26949..f965119fd 100644 --- a/cognee/shared/utils.py +++ b/cognee/shared/utils.py @@ -3,9 +3,7 @@ import os import requests from datetime import datetime, timezone -import graphistry import networkx as nx -import pandas as pd import matplotlib.pyplot as plt import http.server import socketserver diff --git a/cognee/tests/unit/processing/utils/utils_test.py b/cognee/tests/unit/processing/utils/utils_test.py index 675a563a4..a684df8ed 100644 --- a/cognee/tests/unit/processing/utils/utils_test.py +++ b/cognee/tests/unit/processing/utils/utils_test.py @@ -1,8 +1,6 @@ import os import tempfile import pytest -import networkx as nx -import pandas as pd from unittest.mock import patch, mock_open from io import BytesIO from uuid import uuid4 diff --git a/poetry.lock b/poetry.lock index 50ada04bb..96edccbc4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,29 +2,29 @@ [[package]] name = "aiobotocore" -version = "2.23.0" +version = "2.23.1" description = "Async client for aws services using botocore and aiohttp" optional = false python-versions = ">=3.9" groups = ["main"] files = [ - {file = "aiobotocore-2.23.0-py3-none-any.whl", hash = "sha256:8202cebbf147804a083a02bc282fbfda873bfdd0065fd34b64784acb7757b66e"}, - {file = "aiobotocore-2.23.0.tar.gz", hash = "sha256:0333931365a6c7053aee292fe6ef50c74690c4ae06bb019afdf706cb6f2f5e32"}, + {file = "aiobotocore-2.23.1-py3-none-any.whl", hash = "sha256:d81c54d2eae2406ea9a473fea518fed580cf37bc4fc51ce43ba81546e5305114"}, + {file = "aiobotocore-2.23.1.tar.gz", hash = "sha256:a59f2a78629b97d52f10936b79c73de64e481a8c44a62c1871f088df6c1afc4f"}, ] [package.dependencies] aiohttp = ">=3.9.2,<4.0.0" aioitertools = ">=0.5.1,<1.0.0" -boto3 = {version = ">=1.38.23,<1.38.28", optional = true, markers = "extra == \"boto3\""} -botocore = ">=1.38.23,<1.38.28" +boto3 = {version = ">=1.38.40,<1.38.47", optional = true, markers = "extra == \"boto3\""} +botocore = ">=1.38.40,<1.38.47" jmespath = ">=0.7.1,<2.0.0" multidict = ">=6.0.0,<7.0.0" python-dateutil = ">=2.1,<3.0.0" wrapt = ">=1.10.10,<2.0.0" [package.extras] -awscli = ["awscli (>=1.40.22,<1.40.27)"] -boto3 = ["boto3 (>=1.38.23,<1.38.28)"] +awscli = ["awscli (>=1.40.39,<1.40.46)"] +boto3 = ["boto3 (>=1.38.40,<1.38.47)"] httpx = ["httpx (>=0.25.1,<0.29)"] [[package]] @@ -389,15 +389,15 @@ test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock [[package]] name = "astroid" -version = "3.3.10" +version = "3.3.11" description = "An abstract syntax tree for Python with inference support." optional = true python-versions = ">=3.9.0" groups = ["main"] markers = "extra == \"dev\"" files = [ - {file = "astroid-3.3.10-py3-none-any.whl", hash = "sha256:104fb9cb9b27ea95e847a94c003be03a9e039334a8ebca5ee27dafaf5c5711eb"}, - {file = "astroid-3.3.10.tar.gz", hash = "sha256:c332157953060c6deb9caa57303ae0d20b0fbdb2e59b4a4f2a6ba49d0a7961ce"}, + {file = "astroid-3.3.11-py3-none-any.whl", hash = "sha256:54c760ae8322ece1abd213057c4b5bba7c49818853fc901ef09719a60dbf9dec"}, + {file = "astroid-3.3.11.tar.gz", hash = "sha256:1e5a5011af2920c7c67a53f65d536d65bfa7116feeaf2354d8b94f29573bb0ce"}, ] [package.dependencies] @@ -552,15 +552,15 @@ tests-mypy = ["mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" a [[package]] name = "authlib" -version = "1.6.0" +version = "1.6.1" description = "The ultimate Python library in building OAuth and OpenID Connect servers and clients." optional = true python-versions = ">=3.9" groups = ["main"] markers = "extra == \"weaviate\"" files = [ - {file = "authlib-1.6.0-py2.py3-none-any.whl", hash = "sha256:91685589498f79e8655e8a8947431ad6288831d643f11c55c2143ffcc738048d"}, - {file = "authlib-1.6.0.tar.gz", hash = "sha256:4367d32031b7af175ad3a323d571dc7257b7099d55978087ceae4a0d88cd3210"}, + {file = "authlib-1.6.1-py2.py3-none-any.whl", hash = "sha256:e9d2031c34c6309373ab845afc24168fe9e93dc52d252631f52642f21f5ed06e"}, + {file = "authlib-1.6.1.tar.gz", hash = "sha256:4dffdbb1460ba6ec8c17981a4c67af7d8af131231b5a36a88a1e8c80c111cdfd"}, ] [package.dependencies] @@ -570,9 +570,10 @@ cryptography = "*" name = "babel" version = "2.17.0" description = "Internationalization utilities" -optional = false +optional = true python-versions = ">=3.8" groups = ["main"] +markers = "extra == \"notebook\" or extra == \"dev\"" files = [ {file = "babel-2.17.0-py3-none-any.whl", hash = "sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2"}, {file = "babel-2.17.0.tar.gz", hash = "sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d"}, @@ -614,9 +615,10 @@ testing = ["jaraco.test", "pytest (!=8.0.*)", "pytest (>=6,!=8.1.*)", "pytest-ch name = "backrefs" version = "5.9" description = "A wrapper around re and regex that adds additional back references." -optional = false +optional = true python-versions = ">=3.9" groups = ["main"] +markers = "extra == \"dev\"" files = [ {file = "backrefs-5.9-py310-none-any.whl", hash = "sha256:db8e8ba0e9de81fcd635f440deab5ae5f2591b54ac1ebe0550a2ca063488cd9f"}, {file = "backrefs-5.9-py311-none-any.whl", hash = "sha256:6907635edebbe9b2dc3de3a2befff44d74f30a4562adbb8b36f21252ea19c5cf"}, @@ -632,15 +634,15 @@ extras = ["regex"] [[package]] name = "banks" -version = "2.1.3" +version = "2.2.0" description = "A prompt programming language" optional = true python-versions = ">=3.9" groups = ["main"] markers = "extra == \"llama-index\" or extra == \"deepeval\"" files = [ - {file = "banks-2.1.3-py3-none-any.whl", hash = "sha256:9e1217dc977e6dd1ce42c5ff48e9bcaf238d788c81b42deb6a555615ffcffbab"}, - {file = "banks-2.1.3.tar.gz", hash = "sha256:c0dd2cb0c5487274a513a552827e6a8ddbd0ab1a1b967f177e71a6e4748a3ed2"}, + {file = "banks-2.2.0-py3-none-any.whl", hash = "sha256:963cd5c85a587b122abde4f4064078def35c50c688c1b9d36f43c92503854e7d"}, + {file = "banks-2.2.0.tar.gz", hash = "sha256:d1446280ce6e00301e3e952dd754fd8cee23ff277d29ed160994a84d0d7ffe62"}, ] [package.dependencies] @@ -812,18 +814,18 @@ css = ["tinycss2 (>=1.1.0,<1.5)"] [[package]] name = "boto3" -version = "1.38.27" +version = "1.38.46" description = "The AWS SDK for Python" optional = false python-versions = ">=3.9" groups = ["main"] files = [ - {file = "boto3-1.38.27-py3-none-any.whl", hash = "sha256:95f5fe688795303a8a15e8b7e7f255cadab35eae459d00cc281a4fd77252ea80"}, - {file = "boto3-1.38.27.tar.gz", hash = "sha256:94bd7fdd92d5701b362d4df100d21e28f8307a67ff56b6a8b0398119cf22f859"}, + {file = "boto3-1.38.46-py3-none-any.whl", hash = "sha256:9c8e88a32a6465e5905308708cff5b17547117f06982908bdfdb0108b4a65079"}, + {file = "boto3-1.38.46.tar.gz", hash = "sha256:d1ca2b53138afd0341e1962bd52be6071ab7a63c5b4f89228c5ef8942c40c852"}, ] [package.dependencies] -botocore = ">=1.38.27,<1.39.0" +botocore = ">=1.38.46,<1.39.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.13.0,<0.14.0" @@ -832,14 +834,14 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.38.27" +version = "1.38.46" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">=3.9" groups = ["main"] files = [ - {file = "botocore-1.38.27-py3-none-any.whl", hash = "sha256:a785d5e9a5eda88ad6ab9ed8b87d1f2ac409d0226bba6ff801c55359e94d91a8"}, - {file = "botocore-1.38.27.tar.gz", hash = "sha256:9788f7efe974328a38cbade64cc0b1e67d27944b899f88cb786ae362973133b6"}, + {file = "botocore-1.38.46-py3-none-any.whl", hash = "sha256:89ca782ffbf2e8769ca9c89234cfa5ca577f1987d07d913ee3c68c4776b1eb5b"}, + {file = "botocore-1.38.46.tar.gz", hash = "sha256:8798e5a418c27cf93195b077153644aea44cb171fcd56edc1ecebaa1e49e226e"}, ] [package.dependencies] @@ -865,14 +867,14 @@ files = [ [[package]] name = "certifi" -version = "2025.7.9" +version = "2025.7.14" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.7" groups = ["main"] files = [ - {file = "certifi-2025.7.9-py3-none-any.whl", hash = "sha256:d842783a14f8fdd646895ac26f719a061408834473cfc10203f6a575beb15d39"}, - {file = "certifi-2025.7.9.tar.gz", hash = "sha256:c1d2ec05395148ee10cf672ffc28cd37ea0ab0d99f9cc74c43e588cbd111b079"}, + {file = "certifi-2025.7.14-py3-none-any.whl", hash = "sha256:6b31f564a415d79ee77df69d757bb49a5bb53bd9f756cbbe24394ffd6fc1f4b2"}, + {file = "certifi-2025.7.14.tar.gz", hash = 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