diff --git a/.github/workflows/test_eval_framework.yml b/.github/workflows/test_eval_framework.yml new file mode 100644 index 000000000..54aa68dd0 --- /dev/null +++ b/.github/workflows/test_eval_framework.yml @@ -0,0 +1,22 @@ +name: test | eval_framework + +on: + workflow_dispatch: + pull_request: + types: [labeled, synchronize] + + +concurrency: + group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} + cancel-in-progress: true + +jobs: + run_eval_framework_test: + uses: ./.github/workflows/reusable_python_example.yml + with: + example-location: ./evals/eval_framework/run_eval.py + secrets: + LLM_API_KEY: ${{ secrets.OPENAI_API_KEY }} + OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }} + GRAPHISTRY_USERNAME: ${{ secrets.GRAPHISTRY_USERNAME }} + GRAPHISTRY_PASSWORD: ${{ secrets.GRAPHISTRY_PASSWORD }} diff --git a/cognee/infrastructure/llm/prompts/answer_simple_question_benchmark.txt b/cognee/infrastructure/llm/prompts/answer_simple_question_benchmark.txt new file mode 100644 index 000000000..4c3ccbf92 --- /dev/null +++ b/cognee/infrastructure/llm/prompts/answer_simple_question_benchmark.txt @@ -0,0 +1,9 @@ +You are a highly optimized question-answering system that extracts only the most essential information from the provided context. + +Rules: + • Minimize words – Use as few as possible + • Yes/no questions → Answer with only "yes" or "no" + • What/Who/Where questions → Answer with a single word or phrase (no full sentences). + • When questions → Give only the relevant date, time, or period. + • How/Why questions → Answer with the shortest possible phrase. + • No punctuation, just the answer, preferably in dry, concise lowercase diff --git a/cognee/modules/data/models/answers_base.py b/cognee/modules/data/models/answers_base.py new file mode 100644 index 000000000..1e28c52d9 --- /dev/null +++ b/cognee/modules/data/models/answers_base.py @@ -0,0 +1,5 @@ +from sqlalchemy.orm import DeclarativeBase + + +class AnswersBase(DeclarativeBase): + pass diff --git a/cognee/modules/data/models/answers_data.py b/cognee/modules/data/models/answers_data.py new file mode 100644 index 000000000..d1534a7d5 --- /dev/null +++ b/cognee/modules/data/models/answers_data.py @@ -0,0 +1,15 @@ +from datetime import datetime, timezone +from uuid import uuid4 +from sqlalchemy import Column, DateTime, JSON, UUID + +from cognee.modules.data.models.answers_base import AnswersBase + + +class Answers(AnswersBase): + __tablename__ = "eval_answers" + + id = Column(UUID, primary_key=True, default=uuid4) + + payload = Column(JSON, nullable=False) + + created_at = Column(DateTime(timezone=True), default=lambda: datetime.now(timezone.utc)) diff --git a/cognee/modules/data/models/metrics_base.py b/cognee/modules/data/models/metrics_base.py new file mode 100644 index 000000000..fa30fd373 --- /dev/null +++ b/cognee/modules/data/models/metrics_base.py @@ -0,0 +1,5 @@ +from sqlalchemy.orm import DeclarativeBase + + +class MetricsBase(DeclarativeBase): + pass diff --git a/cognee/modules/data/models/metrics_data.py b/cognee/modules/data/models/metrics_data.py new file mode 100644 index 000000000..7f4236194 --- /dev/null +++ b/cognee/modules/data/models/metrics_data.py @@ -0,0 +1,15 @@ +from datetime import datetime, timezone +from uuid import uuid4 +from sqlalchemy import Column, DateTime, JSON, UUID + +from cognee.modules.data.models.metrics_base import MetricsBase + + +class Metrics(MetricsBase): + __tablename__ = "eval_metrics" + + id = Column(UUID, primary_key=True, default=uuid4) + + payload = Column(JSON, nullable=False) + + created_at = Column(DateTime(timezone=True), default=lambda: datetime.now(timezone.utc)) diff --git a/cognee/modules/data/models/questions_base.py b/cognee/modules/data/models/questions_base.py new file mode 100644 index 000000000..81b898b67 --- /dev/null +++ b/cognee/modules/data/models/questions_base.py @@ -0,0 +1,5 @@ +from sqlalchemy.orm import DeclarativeBase + + +class QuestionsBase(DeclarativeBase): + pass diff --git a/cognee/modules/data/models/questions_data.py b/cognee/modules/data/models/questions_data.py new file mode 100644 index 000000000..7038083a8 --- /dev/null +++ b/cognee/modules/data/models/questions_data.py @@ -0,0 +1,15 @@ +from datetime import datetime, timezone +from uuid import uuid4 +from sqlalchemy import Column, DateTime, JSON, UUID + +from cognee.modules.data.models.questions_base import QuestionsBase + + +class Questions(QuestionsBase): + __tablename__ = "eval_questions" + + id = Column(UUID, primary_key=True, default=uuid4) + + payload = Column(JSON, nullable=False) + + created_at = Column(DateTime(timezone=True), default=lambda: datetime.now(timezone.utc)) diff --git a/evals/eval_framework/__init__.py b/evals/eval_framework/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/evals/eval_framework/answer_generation/__init__.py b/evals/eval_framework/answer_generation/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/evals/eval_framework/answer_generation/answer_generation_executor.py b/evals/eval_framework/answer_generation/answer_generation_executor.py new file mode 100644 index 000000000..a5b18c8e7 --- /dev/null +++ b/evals/eval_framework/answer_generation/answer_generation_executor.py @@ -0,0 +1,44 @@ +import cognee +from typing import List, Dict, Callable, Awaitable +from cognee.api.v1.search import SearchType + +question_answering_engine_options: Dict[str, Callable[[str], Awaitable[List[str]]]] = { + "cognee_graph_completion": lambda query: cognee.search( + query_type=SearchType.GRAPH_COMPLETION, query_text=query + ), + "cognee_completion": lambda query: cognee.search( + query_type=SearchType.COMPLETION, query_text=query + ), + "cognee_summaries": lambda query: cognee.search( + query_type=SearchType.SUMMARIES, query_text=query + ), + "cognee_insights": lambda query: cognee.search( + query_type=SearchType.INSIGHTS, query_text=query + ), + "cognee_chunks": lambda query: cognee.search(query_type=SearchType.CHUNKS, query_text=query), + "cognee_code": lambda query: cognee.search(query_type=SearchType.CODE, query_text=query), +} + + +class AnswerGeneratorExecutor: + async def question_answering_non_parallel( + self, + questions: List[Dict[str, str]], + answer_resolver: Callable[[str], Awaitable[List[str]]], + ) -> List[Dict[str, str]]: + answers = [] + for instance in questions: + query_text = instance["question"] + correct_answer = instance["answer"] + + search_results = await answer_resolver(query_text) + + answers.append( + { + "question": query_text, + "answer": search_results[0], + "golden_answer": correct_answer, + } + ) + + return answers diff --git a/evals/eval_framework/answer_generation/run_question_answering_module.py b/evals/eval_framework/answer_generation/run_question_answering_module.py new file mode 100644 index 000000000..3ad5e78ac --- /dev/null +++ b/evals/eval_framework/answer_generation/run_question_answering_module.py @@ -0,0 +1,54 @@ +import logging +import json +from evals.eval_framework.answer_generation.answer_generation_executor import ( + AnswerGeneratorExecutor, + question_answering_engine_options, +) +from cognee.infrastructure.files.storage import LocalStorage +from cognee.infrastructure.databases.relational.get_relational_engine import ( + get_relational_engine, + get_relational_config, +) +from cognee.modules.data.models.answers_base import AnswersBase +from cognee.modules.data.models.answers_data import Answers + + +async def create_and_insert_answers_table(questions_payload): + relational_config = get_relational_config() + relational_engine = get_relational_engine() + + if relational_engine.engine.dialect.name == "sqlite": + LocalStorage.ensure_directory_exists(relational_config.db_path) + + async with relational_engine.engine.begin() as connection: + if len(AnswersBase.metadata.tables.keys()) > 0: + await connection.run_sync(AnswersBase.metadata.create_all) + + async with relational_engine.get_async_session() as session: + data_point = Answers(payload=questions_payload) + session.add(data_point) + await session.commit() + + +async def run_question_answering(params: dict) -> None: + if params.get("answering_questions"): + logging.info("Question answering started...") + try: + with open(params["questions_path"], "r", encoding="utf-8") as f: + questions = json.load(f) + except FileNotFoundError: + raise FileNotFoundError(f"Could not find the file: {params['questions_path']}") + except json.JSONDecodeError as e: + raise ValueError(f"Error decoding JSON from {params['questions_path']}: {e}") + + logging.info(f"Loaded {len(questions)} questions from {params['questions_path']}") + answer_generator = AnswerGeneratorExecutor() + answers = await answer_generator.question_answering_non_parallel( + questions=questions, + answer_resolver=question_answering_engine_options[params["qa_engine"]], + ) + with open(params["answers_path"], "w", encoding="utf-8") as f: + json.dump(answers, f, ensure_ascii=False, indent=4) + + await create_and_insert_answers_table(answers) + logging.info("Question answering End...") diff --git a/evals/eval_framework/benchmark_adapters/__init__.py b/evals/eval_framework/benchmark_adapters/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/evals/eval_framework/benchmark_adapters/base_benchmark_adapter.py b/evals/eval_framework/benchmark_adapters/base_benchmark_adapter.py new file mode 100644 index 000000000..325126b7b --- /dev/null +++ b/evals/eval_framework/benchmark_adapters/base_benchmark_adapter.py @@ -0,0 +1,8 @@ +from abc import ABC, abstractmethod +from typing import List, Optional + + +class BaseBenchmarkAdapter(ABC): + @abstractmethod + def load_corpus(self, limit: Optional[int] = None, seed: int = 42) -> List[str]: + pass diff --git a/evals/eval_framework/benchmark_adapters/benchmark_adapters.py b/evals/eval_framework/benchmark_adapters/benchmark_adapters.py new file mode 100644 index 000000000..6d7033caa --- /dev/null +++ b/evals/eval_framework/benchmark_adapters/benchmark_adapters.py @@ -0,0 +1,21 @@ +from enum import Enum +from typing import Type + +from evals.eval_framework.benchmark_adapters.hotpot_qa_adapter import HotpotQAAdapter +from evals.eval_framework.benchmark_adapters.dummy_adapter import DummyAdapter +from evals.eval_framework.benchmark_adapters.twowikimultihop_adapter import TwoWikiMultihopAdapter + + +class BenchmarkAdapter(Enum): + DUMMY = ("Dummy", DummyAdapter) + HOTPOTQA = ("HotPotQA", HotpotQAAdapter) + TWOWIKIMULTIHOP = ("TwoWikiMultiHop", TwoWikiMultihopAdapter) + + def __new__(cls, adapter_name: str, adapter_class: Type): + obj = object.__new__(cls) + obj._value_ = adapter_name + obj.adapter_class = adapter_class + return obj + + def __str__(self): + return self.value diff --git a/evals/eval_framework/benchmark_adapters/dummy_adapter.py b/evals/eval_framework/benchmark_adapters/dummy_adapter.py new file mode 100644 index 000000000..3f35a8be6 --- /dev/null +++ b/evals/eval_framework/benchmark_adapters/dummy_adapter.py @@ -0,0 +1,22 @@ +from typing import Optional, Union, Any, LiteralString + +from evals.eval_framework.benchmark_adapters.base_benchmark_adapter import BaseBenchmarkAdapter + + +class DummyAdapter(BaseBenchmarkAdapter): + def load_corpus( + self, limit: Optional[int] = None, seed: int = 42 + ) -> tuple[list[Union[LiteralString, str]], list[dict[str, str]]]: + corpus_list = [ + "The cognee is an AI memory engine that supports different vector and graph databases", + "Neo4j is a graph database supported by cognee", + ] + question_answer_pairs = [ + { + "answer": "Yes", + "question": "Is Neo4j supported by cognee?", + "type": "dummy", + } + ] + + return corpus_list, question_answer_pairs diff --git a/evals/eval_framework/benchmark_adapters/hotpot_qa_adapter.py b/evals/eval_framework/benchmark_adapters/hotpot_qa_adapter.py new file mode 100644 index 000000000..3cf4753e1 --- /dev/null +++ b/evals/eval_framework/benchmark_adapters/hotpot_qa_adapter.py @@ -0,0 +1,51 @@ +import requests +import os +import json +import random +from typing import Optional, Union, Any, LiteralString +from evals.eval_framework.benchmark_adapters.base_benchmark_adapter import BaseBenchmarkAdapter + + +class HotpotQAAdapter(BaseBenchmarkAdapter): + dataset_info = { + "filename": "hotpot_benchmark.json", + "url": "http://curtis.ml.cmu.edu/datasets/hotpot/hotpot_dev_distractor_v1.json", + # train: "http://curtis.ml.cmu.edu/datasets/hotpot/hotpot_train_v1.1.json" delete file after changing the url + # distractor test: "http://curtis.ml.cmu.edu/datasets/hotpot/hotpot_dev_distractor_v1.json" delete file after changing the url + } + + def load_corpus( + self, limit: Optional[int] = None, seed: int = 42 + ) -> tuple[list[Union[LiteralString, str]], list[dict[str, Any]]]: + filename = self.dataset_info["filename"] + + if os.path.exists(filename): + with open(filename, "r", encoding="utf-8") as f: + corpus_json = json.load(f) + else: + response = requests.get(self.dataset_info["url"]) + response.raise_for_status() + corpus_json = response.json() + + with open(filename, "w", encoding="utf-8") as f: + json.dump(corpus_json, f, ensure_ascii=False, indent=4) + + if limit is not None and 0 < limit < len(corpus_json): + random.seed(seed) + corpus_json = random.sample(corpus_json, limit) + + corpus_list = [] + question_answer_pairs = [] + for item in corpus_json: + for title, sentences in item["context"]: + corpus_list.append(" ".join(sentences)) + + question_answer_pairs.append( + { + "question": item["question"], + "answer": item["answer"].lower(), + "level": item["level"], + } + ) + + return corpus_list, question_answer_pairs diff --git a/evals/eval_framework/benchmark_adapters/twowikimultihop_adapter.py b/evals/eval_framework/benchmark_adapters/twowikimultihop_adapter.py new file mode 100644 index 000000000..0fbe3f156 --- /dev/null +++ b/evals/eval_framework/benchmark_adapters/twowikimultihop_adapter.py @@ -0,0 +1,49 @@ +import requests +import os +import json +import random +from typing import Optional, Union, Any, LiteralString +from evals.eval_framework.benchmark_adapters.base_benchmark_adapter import BaseBenchmarkAdapter + + +class TwoWikiMultihopAdapter(BaseBenchmarkAdapter): + dataset_info = { + "filename": "2wikimultihop_dev.json", + "URL": "https://huggingface.co/datasets/voidful/2WikiMultihopQA/resolve/main/dev.json", + } + + def load_corpus( + self, limit: Optional[int] = None, seed: int = 42 + ) -> tuple[list[Union[LiteralString, str]], list[dict[str, Any]]]: + filename = self.dataset_info["filename"] + + if os.path.exists(filename): + with open(filename, "r", encoding="utf-8") as f: + corpus_json = json.load(f) + else: + response = requests.get(self.dataset_info["URL"]) + response.raise_for_status() + corpus_json = response.json() + + with open(filename, "w", encoding="utf-8") as f: + json.dump(corpus_json, f, ensure_ascii=False, indent=4) + + if limit is not None and 0 < limit < len(corpus_json): + random.seed(seed) + corpus_json = random.sample(corpus_json, limit) + + corpus_list = [] + question_answer_pairs = [] + for dict in corpus_json: + for title, sentences in dict["context"]: + corpus_list.append(" ".join(sentences)) + + question_answer_pairs.append( + { + "question": dict["question"], + "answer": dict["answer"].lower(), + "type": dict["type"], + } + ) + + return corpus_list, question_answer_pairs diff --git a/evals/eval_framework/corpus_builder/__init__.py b/evals/eval_framework/corpus_builder/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/evals/eval_framework/corpus_builder/corpus_builder_executor.py b/evals/eval_framework/corpus_builder/corpus_builder_executor.py new file mode 100644 index 000000000..49abc9489 --- /dev/null +++ b/evals/eval_framework/corpus_builder/corpus_builder_executor.py @@ -0,0 +1,43 @@ +import cognee +import logging +from typing import Optional, Tuple, List, Dict, Union, Any + +from evals.eval_framework.benchmark_adapters.benchmark_adapters import BenchmarkAdapter +from cognee.shared.utils import setup_logging + + +class CorpusBuilderExecutor: + def __init__(self, benchmark: Union[str, Any] = "Dummy") -> None: + if isinstance(benchmark, str): + try: + adapter_enum = BenchmarkAdapter(benchmark) + except ValueError: + raise ValueError(f"Unsupported benchmark: {benchmark}") + self.adapter = adapter_enum.adapter_class() + else: + self.adapter = benchmark + + self.raw_corpus = None + self.questions = None + + def load_corpus(self, limit: Optional[int] = None) -> Tuple[List[Dict], List[str]]: + self.raw_corpus, self.questions = self.adapter.load_corpus(limit=limit) + return self.raw_corpus, self.questions + + async def build_corpus(self, limit: Optional[int] = None) -> List[str]: + self.load_corpus(limit=limit) + await self.run_cognee() + return self.questions + + async def run_cognee(self) -> None: + setup_logging(logging.ERROR) + + # Pruning system and databases. + await cognee.prune.prune_data() + await cognee.prune.prune_system(metadata=True) + + # Adding corpus elements to the cognee metastore. + await cognee.add(self.raw_corpus) + + # Running cognify to build the knowledge graph. + await cognee.cognify() diff --git a/evals/eval_framework/corpus_builder/run_corpus_builder.py b/evals/eval_framework/corpus_builder/run_corpus_builder.py new file mode 100644 index 000000000..01ce58537 --- /dev/null +++ b/evals/eval_framework/corpus_builder/run_corpus_builder.py @@ -0,0 +1,42 @@ +import logging +import json +from cognee.infrastructure.files.storage import LocalStorage +from evals.eval_framework.corpus_builder.corpus_builder_executor import CorpusBuilderExecutor +from cognee.modules.data.models.questions_base import QuestionsBase +from cognee.modules.data.models.questions_data import Questions +from cognee.infrastructure.databases.relational.get_relational_engine import ( + get_relational_engine, + get_relational_config, +) + + +async def create_and_insert_questions_table(questions_payload): + relational_config = get_relational_config() + relational_engine = get_relational_engine() + + if relational_engine.engine.dialect.name == "sqlite": + LocalStorage.ensure_directory_exists(relational_config.db_path) + + async with relational_engine.engine.begin() as connection: + if len(QuestionsBase.metadata.tables.keys()) > 0: + await connection.run_sync(QuestionsBase.metadata.create_all) + + async with relational_engine.get_async_session() as session: + data_point = Questions(payload=questions_payload) + session.add(data_point) + await session.commit() + + +async def run_corpus_builder(params: dict) -> None: + if params.get("building_corpus_from_scratch"): + logging.info("Corpus Builder started...") + corpus_builder = CorpusBuilderExecutor(benchmark=params["benchmark"]) + questions = await corpus_builder.build_corpus( + limit=params.get("number_of_samples_in_corpus") + ) + with open(params["questions_path"], "w", encoding="utf-8") as f: + json.dump(questions, f, ensure_ascii=False, indent=4) + + await create_and_insert_questions_table(questions_payload=questions) + + logging.info("Corpus Builder End...") diff --git a/evals/eval_framework/eval_config.py b/evals/eval_framework/eval_config.py new file mode 100644 index 000000000..5651a3e47 --- /dev/null +++ b/evals/eval_framework/eval_config.py @@ -0,0 +1,56 @@ +from functools import lru_cache +from pydantic_settings import BaseSettings, SettingsConfigDict +from typing import List + + +class EvalConfig(BaseSettings): + # Corpus builder params + building_corpus_from_scratch: bool = True + number_of_samples_in_corpus: int = 1 + benchmark: str = "Dummy" # Options: 'HotPotQA', 'Dummy', 'TwoWikiMultiHop' + + # Question answering params + answering_questions: bool = True + qa_engine: str = ( + "cognee_completion" # Options: 'cognee_completion' or 'cognee_graph_completion' + ) + + # Evaluation params + evaluating_answers: bool = True + evaluation_engine: str = "DeepEval" + evaluation_metrics: List[str] = ["correctness", "EM", "f1"] + deepeval_model: str = "gpt-4o-mini" + + # Visualization + dashboard: bool = True + + # file paths + questions_path: str = "questions_output.json" + answers_path: str = "answers_output.json" + metrics_path: str = "metrics_output.json" + dashboard_path: str = "dashboard.html" + + model_config = SettingsConfigDict(env_file=".env", extra="allow") + + def to_dict(self) -> dict: + return { + "building_corpus_from_scratch": self.building_corpus_from_scratch, + "number_of_samples_in_corpus": self.number_of_samples_in_corpus, + "benchmark": self.benchmark, + "answering_questions": self.answering_questions, + "qa_engine": self.qa_engine, + "evaluating_answers": self.evaluating_answers, + "evaluation_engine": self.evaluation_engine, + "evaluation_metrics": self.evaluation_metrics, + "dashboard": self.dashboard, + "questions_path": self.questions_path, + "answers_path": self.answers_path, + "metrics_path": self.metrics_path, + "dashboard_path": self.dashboard_path, + "deepeval_model": self.deepeval_model, + } + + +@lru_cache +def get_llm_config(): + return EvalConfig() diff --git a/evals/eval_framework/evaluation/__init__.py b/evals/eval_framework/evaluation/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/evals/eval_framework/evaluation/base_eval_adapter.py b/evals/eval_framework/evaluation/base_eval_adapter.py new file mode 100644 index 000000000..76fa4d602 --- /dev/null +++ b/evals/eval_framework/evaluation/base_eval_adapter.py @@ -0,0 +1,10 @@ +from abc import ABC, abstractmethod +from typing import Any, Dict, List + + +class BaseEvalAdapter(ABC): + @abstractmethod + async def evaluate_answers( + self, data: List[Dict[str, Any]], evaluator_metrics: List[str] + ) -> List[Dict[str, Any]]: + pass diff --git a/evals/eval_framework/evaluation/deep_eval_adapter.py b/evals/eval_framework/evaluation/deep_eval_adapter.py new file mode 100644 index 000000000..ec0cc41f3 --- /dev/null +++ b/evals/eval_framework/evaluation/deep_eval_adapter.py @@ -0,0 +1,60 @@ +from deepeval.metrics import GEval +from deepeval.test_case import LLMTestCase, LLMTestCaseParams +from evals.eval_framework.eval_config import EvalConfig +from evals.eval_framework.evaluation.base_eval_adapter import BaseEvalAdapter +from evals.eval_framework.evaluation.metrics.exact_match import ExactMatchMetric +from evals.eval_framework.evaluation.metrics.f1 import F1ScoreMetric +from typing import Any, Dict, List + + +class DeepEvalAdapter(BaseEvalAdapter): + def __init__(self): + self.g_eval_metrics = { + "correctness": self.g_eval_correctness(), + "EM": ExactMatchMetric(), + "f1": F1ScoreMetric(), + } + + async def evaluate_answers( + self, answers: List[Dict[str, Any]], evaluator_metrics: List[str] + ) -> List[Dict[str, Any]]: + # evaluator_metrics contains all the necessary metrics that are gonna be evaluated dynamically + for metric in evaluator_metrics: + if metric not in self.g_eval_metrics: + raise ValueError(f"Unsupported metric: {metric}") + + results = [] + for answer in answers: + test_case = LLMTestCase( + input=answer["question"], + actual_output=answer["answer"], + expected_output=answer["golden_answer"], + ) + metric_results = {} + for metric in evaluator_metrics: + metric_to_calculate = self.g_eval_metrics[metric] + metric_to_calculate.measure(test_case) + metric_results[metric] = { + "score": metric_to_calculate.score, + "reason": metric_to_calculate.reason, + } + results.append({**answer, "metrics": metric_results}) + + return results + + def g_eval_correctness(self): + return GEval( + name="Correctness", + criteria="Determine whether the actual output is factually correct based on the expected output.", + model=EvalConfig().to_dict()["deepeval_model"], + evaluation_steps=[ + "Check whether the facts in 'actual output' contradicts any facts in 'expected output'", + "You should also heavily penalize omission of detail", + "Vague language, or contradicting OPINIONS, are OK", + ], + evaluation_params=[ + LLMTestCaseParams.INPUT, + LLMTestCaseParams.ACTUAL_OUTPUT, + LLMTestCaseParams.EXPECTED_OUTPUT, + ], + ) diff --git a/evals/eval_framework/evaluation/evaluation_executor.py b/evals/eval_framework/evaluation/evaluation_executor.py new file mode 100644 index 000000000..becee8f4e --- /dev/null +++ b/evals/eval_framework/evaluation/evaluation_executor.py @@ -0,0 +1,20 @@ +from typing import List, Dict, Any, Union +from evals.eval_framework.evaluation.evaluator_adapters import EvaluatorAdapter + + +class EvaluationExecutor: + def __init__(self, evaluator_engine: Union[str, EvaluatorAdapter, Any] = "DeepEval") -> None: + if isinstance(evaluator_engine, str): + try: + adapter_enum = EvaluatorAdapter(evaluator_engine) + except ValueError: + raise ValueError(f"Unsupported evaluator: {evaluator_engine}") + self.eval_adapter = adapter_enum.adapter_class() + elif isinstance(evaluator_engine, EvaluatorAdapter): + self.eval_adapter = evaluator_engine.adapter_class() + else: + self.eval_adapter = evaluator_engine + + async def execute(self, answers: List[Dict[str, str]], evaluator_metrics: Any) -> Any: + metrics = await self.eval_adapter.evaluate_answers(answers, evaluator_metrics) + return metrics diff --git a/evals/eval_framework/evaluation/evaluator_adapters.py b/evals/eval_framework/evaluation/evaluator_adapters.py new file mode 100644 index 000000000..1b78dee28 --- /dev/null +++ b/evals/eval_framework/evaluation/evaluator_adapters.py @@ -0,0 +1,16 @@ +from enum import Enum +from typing import Type +from evals.eval_framework.evaluation.deep_eval_adapter import DeepEvalAdapter + + +class EvaluatorAdapter(Enum): + DEEPEVAL = ("DeepEval", DeepEvalAdapter) + + def __new__(cls, adapter_name: str, adapter_class: Type): + obj = object.__new__(cls) + obj._value_ = adapter_name + obj.adapter_class = adapter_class + return obj + + def __str__(self): + return self.value diff --git a/evals/eval_framework/evaluation/metrics/exact_match.py b/evals/eval_framework/evaluation/metrics/exact_match.py new file mode 100644 index 000000000..51709c345 --- /dev/null +++ b/evals/eval_framework/evaluation/metrics/exact_match.py @@ -0,0 +1,15 @@ +from deepeval.test_case import LLMTestCase +from typing import Optional + + +class ExactMatchMetric: + def __init__(self) -> None: + self.score: Optional[float] = None + self.reason: Optional[str] = None + + def measure(self, test_case: "LLMTestCase") -> float: + actual = test_case.actual_output.strip().lower() if test_case.actual_output else "" + expected = test_case.expected_output.strip().lower() if test_case.expected_output else "" + self.score = 1.0 if actual == expected else 0.0 + self.reason = "Exact match" if self.score == 1.0 else "Not an exact match" + return self.score diff --git a/evals/eval_framework/evaluation/metrics/f1.py b/evals/eval_framework/evaluation/metrics/f1.py new file mode 100644 index 000000000..953df59e4 --- /dev/null +++ b/evals/eval_framework/evaluation/metrics/f1.py @@ -0,0 +1,46 @@ +from collections import Counter +from deepeval.test_case import LLMTestCase +import re +from typing import Optional, Any + + +class F1ScoreMetric: + def __init__(self) -> None: + self.score: Optional[float] = None + self.reason: Optional[str] = None + + def measure(self, test_case: "LLMTestCase") -> float: + actual = (test_case.actual_output or "").lower() + expected = (test_case.expected_output or "").lower() + + actual_tokens = [ + re.sub(r"\W+", "", token.strip()) + for token in actual.split() + if re.sub(r"\W+", "", token.strip()) + ] + + expected_tokens = [ + re.sub(r"\W+", "", token.strip()) + for token in expected.split() + if re.sub(r"\W+", "", token.strip()) + ] + + if not actual_tokens and not expected_tokens: + self.score = 1.0 + self.reason = "Both actual and expected are empty" + return self.score + + actual_counts = Counter(actual_tokens) + expected_counts = Counter(expected_tokens) + + tp = sum(min(actual_counts[word], expected_counts[word]) for word in actual_counts) + fp = sum(actual_counts[word] for word in actual_counts) - tp + fn = sum(expected_counts[word] for word in expected_counts) - tp + + precision = tp / (tp + fp) if (tp + fp) > 0 else 0.0 + recall = tp / (tp + fn) if (tp + fn) > 0 else 0.0 + + f1 = 2 * (precision * recall) / (precision + recall) if (precision + recall) > 0 else 0.0 + self.score = f1 + self.reason = f"F1: {f1:.2f} (Precision: {precision:.2f}, Recall: {recall:.2f})" + return self.score diff --git a/evals/eval_framework/evaluation/run_evaluation_module.py b/evals/eval_framework/evaluation/run_evaluation_module.py new file mode 100644 index 000000000..351d253f6 --- /dev/null +++ b/evals/eval_framework/evaluation/run_evaluation_module.py @@ -0,0 +1,59 @@ +import logging +import json +from evals.eval_framework.evaluation.evaluation_executor import EvaluationExecutor +from evals.eval_framework.metrics_dashboard import generate_metrics_dashboard +from cognee.infrastructure.files.storage import LocalStorage +from cognee.infrastructure.databases.relational.get_relational_engine import ( + get_relational_engine, + get_relational_config, +) +from cognee.modules.data.models.metrics_data import Metrics +from cognee.modules.data.models.metrics_base import MetricsBase + + +async def create_and_insert_metrics_table(questions_payload): + relational_config = get_relational_config() + relational_engine = get_relational_engine() + + if relational_engine.engine.dialect.name == "sqlite": + LocalStorage.ensure_directory_exists(relational_config.db_path) + + async with relational_engine.engine.begin() as connection: + if len(MetricsBase.metadata.tables.keys()) > 0: + await connection.run_sync(MetricsBase.metadata.create_all) + + async with relational_engine.get_async_session() as session: + data_point = Metrics(payload=questions_payload) + session.add(data_point) + await session.commit() + + +async def run_evaluation(params: dict) -> None: + if params.get("evaluating_answers"): + logging.info("Evaluation started...") + try: + with open(params["answers_path"], "r", encoding="utf-8") as f: + answers = json.load(f) + except FileNotFoundError: + raise FileNotFoundError(f"Could not find the file: {params['answers_path']}") + except json.JSONDecodeError as e: + raise ValueError(f"Error decoding JSON from {params['answers_path']}: {e}") + + logging.info(f"Loaded {len(answers)} answers from {params['answers_path']}") + evaluator = EvaluationExecutor(evaluator_engine=params["evaluation_engine"]) + metrics = await evaluator.execute( + answers=answers, evaluator_metrics=params["evaluation_metrics"] + ) + with open(params["metrics_path"], "w", encoding="utf-8") as f: + json.dump(metrics, f, ensure_ascii=False, indent=4) + + await create_and_insert_metrics_table(metrics) + + logging.info("Evaluation End...") + + if params.get("dashboard"): + generate_metrics_dashboard( + json_data=params["metrics_path"], + output_file=params["dashboard_path"], + benchmark=params["benchmark"], + ) diff --git a/evals/eval_framework/metrics_dashboard.py b/evals/eval_framework/metrics_dashboard.py new file mode 100644 index 000000000..739f3f605 --- /dev/null +++ b/evals/eval_framework/metrics_dashboard.py @@ -0,0 +1,148 @@ +import json +from collections import defaultdict +import plotly.graph_objects as go +import numpy as np + + +def bootstrap_ci(scores, num_samples=10000, confidence_level=0.95): + means = [] + n = len(scores) + for _ in range(num_samples): + sample = np.random.choice(scores, size=n, replace=True) + means.append(np.mean(sample)) + + lower_bound = np.percentile(means, (1 - confidence_level) / 2 * 100) + upper_bound = np.percentile(means, (1 + confidence_level) / 2 * 100) + return np.mean(scores), lower_bound, upper_bound + + +def generate_metrics_dashboard(json_data, output_file="dashboard_with_ci.html", benchmark=""): + try: + with open(json_data, "r", encoding="utf-8") as f: + data = json.load(f) + except FileNotFoundError: + raise FileNotFoundError(f"Could not find the file: {json_data}") + except json.JSONDecodeError as e: + raise ValueError(f"Error decoding JSON from {json_data}: {e}") + + metrics_data = defaultdict(list) + metric_details = defaultdict(list) + + for entry in data: + for metric, values in entry["metrics"].items(): + score = values["score"] + metrics_data[metric].append(score) + if "reason" in values: + metric_details[metric].append( + { + "question": entry["question"], + "answer": entry["answer"], + "golden_answer": entry["golden_answer"], + "reason": values["reason"], + "score": score, + } + ) + + figures = [] + + for metric, scores in metrics_data.items(): + fig = go.Figure() + fig.add_trace(go.Histogram(x=scores, name=metric, nbinsx=10, marker_color="#1f77b4")) + + fig.update_layout( + title=f"{metric} Score Distribution", + xaxis_title="Score", + yaxis_title="Count", + bargap=0.1, + template="seaborn", + ) + figures.append(fig.to_html(full_html=False)) + + ci_results = {} + for metric, scores in metrics_data.items(): + mean_score, lower, upper = bootstrap_ci(scores) + ci_results[metric] = (mean_score, lower, upper) + + # Bar chart with confidence intervals + fig = go.Figure() + for metric, (mean_score, lower, upper) in ci_results.items(): + fig.add_trace( + go.Bar( + x=[metric], + y=[mean_score], + error_y=dict( + type="data", + array=[upper - mean_score], + arrayminus=[mean_score - lower], + visible=True, + ), + name=metric, + ) + ) + + fig.update_layout( + title="95% confidence interval for all the metrics", + xaxis_title="Metric", + yaxis_title="Score", + template="seaborn", + ) + figures.append(fig.to_html(full_html=False)) + + details_html = [] + for metric, details in metric_details.items(): + details_html.append(f"

{metric} Details

") + details_html.append(""" + + + + + + + + + """) + for item in details: + details_html.append( + f"" + f"" + f"" + f"" + f"" + f"" + f"" + ) + details_html.append("
QuestionAnswerGolden AnswerReasonScore
{item['question']}{item['answer']}{item['golden_answer']}{item['reason']}{item['score']}
") + + html_template = f""" + + + + LLM Evaluation Dashboard {benchmark} + + + + +

LLM Evaluation Metrics Dashboard {benchmark}

+ +

Metrics Distribution

+ {"".join([f'
{fig}
' for fig in figures[: len(metrics_data)]])} + +

95% confidence interval for all the metrics

+
{figures[-1]}
+ +

Detailed Explanations

+ {"".join(details_html)} + + + """ + + with open(output_file, "w", encoding="utf-8") as f: + f.write(html_template) + return output_file diff --git a/evals/eval_framework/run_eval.py b/evals/eval_framework/run_eval.py new file mode 100644 index 000000000..7a8653b58 --- /dev/null +++ b/evals/eval_framework/run_eval.py @@ -0,0 +1,41 @@ +import logging +import asyncio +from cognee.shared.utils import setup_logging +from evals.eval_framework.eval_config import EvalConfig + +from evals.eval_framework.corpus_builder.run_corpus_builder import run_corpus_builder +from evals.eval_framework.answer_generation.run_question_answering_module import ( + run_question_answering, +) +from evals.eval_framework.evaluation.run_evaluation_module import run_evaluation + +# Configure logging +setup_logging(logging.INFO) + +# Define parameters and file paths. +eval_params = EvalConfig().to_dict() + +questions_file = "questions_output.json" +answers_file = "answers_output.json" +metrics_file = "metrics_output.json" +dashboard_path = "dashboard.html" + + +async def main(): + # Corpus builder + await run_corpus_builder(eval_params) + + # Question answering + await run_question_answering(eval_params) + + # Metrics calculation + dashboard + await run_evaluation(eval_params) + + +if __name__ == "__main__": + loop = asyncio.new_event_loop() + asyncio.set_event_loop(loop) + try: + loop.run_until_complete(main()) + finally: + print("Done") diff --git a/poetry.lock b/poetry.lock index 28c751af7..0c6d89eaa 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. 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