Fix visualization

cognee/api/client.py

@@ -24,7 +24,7 @@ from cognee.api.v1.users.routers import (
     get_reset_password_router,
     get_verify_router,
     get_users_router,
-    get_visualize_router
+    get_visualize_router,
 )
 from contextlib import asynccontextmanager
 

cognee/api/v1/cognify/cognify_v2.py

@@ -110,7 +110,7 @@ async def run_cognify_pipeline(
                 summarization_model=cognee_config.summarization_model,
                 task_config={"batch_size": 10},
             ),
-            Task(add_data_points, only_root = True, task_config = { "batch_size": 10 }),
+            Task(add_data_points, only_root=True, task_config={"batch_size": 10}),
         ]
 
         pipeline = run_tasks(tasks, data_documents, "cognify_pipeline")

cognee/api/v1/users/routers/get_visualize_router.py

@@ -11,6 +11,7 @@ from cognee.modules.users.methods import get_authenticated_user
 
 logger = logging.getLogger(__name__)
 
+
 def get_visualize_router() -> APIRouter:
     router = APIRouter()
 

cognee/api/v1/visualize/visualize.py

@@ -3,8 +3,7 @@ from cognee.infrastructure.databases.graph import get_graph_engine
 import logging
 
 
-
-async def visualize_graph(label:str="name"):
+async def visualize_graph(label: str = "name"):
     """ """
     graph_engine = await get_graph_engine()
     graph_data = await graph_engine.get_graph_data()

cognee/infrastructure/llm/generic_llm_api/adapter.py

@@ -8,6 +8,7 @@ from cognee.infrastructure.llm.llm_interface import LLMInterface
 from cognee.infrastructure.llm.config import get_llm_config
 import litellm
 
+
 class GenericAPIAdapter(LLMInterface):
     """Adapter for Generic API LLM provider API"""
 
@@ -29,7 +30,6 @@ class GenericAPIAdapter(LLMInterface):
         else:
             self.aclient = instructor.from_litellm(litellm.acompletion)
 
-
     async def acreate_structured_output(
         self, text_input: str, system_prompt: str, response_model: Type[BaseModel]
     ) -> BaseModel:
@@ -49,8 +49,6 @@ class GenericAPIAdapter(LLMInterface):
                 },
             ],
             max_retries=5,
-            api_base = self.endpoint,
-            response_model=response_model
+            api_base=self.endpoint,
+            response_model=response_model,
         )
-
-

cognee/shared/utils.py

@@ -305,7 +305,6 @@ async def convert_to_serializable_graph(G):
     return new_G
 
 
-
 def generate_layout_positions(G, layout_func, layout_scale):
     """
     Generate layout positions for the graph using the specified layout function.
@@ -381,7 +380,7 @@ async def create_cognee_style_network_with_logo(
     layout_func=nx.spring_layout,
     layout_scale=3.0,
     logo_alpha=0.1,
-    bokeh_object = False,
+    bokeh_object=False,
 ):
     """
     Create a Cognee-inspired network visualization with an embedded logo.
@@ -389,7 +388,6 @@ async def create_cognee_style_network_with_logo(
     logging.info("Converting graph to serializable format...")
     G = await convert_to_serializable_graph(G)
 
-
     logging.info("Generating layout positions...")
     layout_positions = generate_layout_positions(G, layout_func, layout_scale)
 
@@ -420,7 +418,6 @@ async def create_cognee_style_network_with_logo(
     embed_logo(p, layout_scale, logo_alpha, "bottom_right")
     embed_logo(p, layout_scale, logo_alpha, "top_left")
 
-
     logging.info("Styling and rendering graph...")
     style_and_render_graph(p, G, layout_positions, label, node_colors, centrality)
 
@@ -434,7 +431,6 @@ async def create_cognee_style_network_with_logo(
     )
     p.add_tools(hover_tool)
 
-
     logging.info(f"Saving visualization to {output_filename}...")
     html_content = file_html(p, CDN, title)
     with open(output_filename, "w") as f:
@@ -442,8 +438,6 @@ async def create_cognee_style_network_with_logo(
 
     logging.info("Visualization complete.")
 
-
-
     if bokeh_object:
         return p
     return html_content
@@ -461,9 +455,8 @@ def graph_to_tuple(graph):
     return (nodes, edges)
 
 
-
 def setup_logging(log_level=logging.INFO):
-    """ This method sets up the logging configuration. """
+    """This method sets up the logging configuration."""
     formatter = logging.Formatter("%(asctime)s - %(levelname)s - %(message)s\n")
     stream_handler = logging.StreamHandler(sys.stdout)
     stream_handler.setFormatter(formatter)
@@ -498,12 +491,17 @@ if __name__ == "__main__":
 
     import asyncio
 
-    output_html = asyncio.run(create_cognee_style_network_with_logo(G,        output_filename="example_network.html",
+    output_html = asyncio.run(
+        create_cognee_style_network_with_logo(
+            G,
+            output_filename="example_network.html",
             title="Example Cognee Network",
             node_attribute="group",  # Attribute to use for coloring nodes
             layout_func=nx.spring_layout,  # Layout function
             layout_scale=3.0,  # Scale for the layout
-        logo_alpha=0.2, ))
+            logo_alpha=0.2,
+        )
+    )
 
     # Call the function
     # output_html = await create_cognee_style_network_with_logo(

cognee/tasks/storage/add_data_points.py

@@ -20,7 +20,7 @@ async def add_data_points(data_points: list[DataPoint], only_root=False):
                 added_nodes=added_nodes,
                 added_edges=added_edges,
                 visited_properties=visited_properties,
-                only_root = only_root,
+                only_root=only_root,
             )
             for data_point in data_points
         ]

cognee/tests/unit/processing/utils/utils_test.py

@@ -102,6 +102,7 @@ def test_prepare_nodes():
     assert isinstance(nodes_df, pd.DataFrame)
     assert len(nodes_df) == 1
 
+
 @pytest.mark.asyncio
 async def test_create_cognee_style_network_with_logo():
     import networkx as nx

examples/python/dynamic_steps_example.py

@@ -191,7 +191,7 @@ async def main(enable_steps):
         print(format_triplets(results))
 
 
-if __name__ == '__main__':
+if __name__ == "__main__":
     setup_logging(logging.ERROR)
 
     rebuild_kg = True