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chore: uv lock check in pre-test workflow (#1773)

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<!-- .github/pull_request_template.md -->
`.github/actions/cognee_setup/action.yml` - makes `uv.lock` rebuild
disabled by default.
`.github/workflows/pre_test.yml` - lightweight checks that signal that
PR is not ready for testing. For that moment it verifies that `uv.lock`
corresponds to `pyproject.toml`. For the case of failure the run
provides the instructions how to fix the `uv.lock`

Warning: made an exclusion for python 3.13 dependencies. This doesn't
look good to me

## Description
Make
## Type of Change
<!-- Please check the relevant option -->
- [ ] Bug fix (non-breaking change that fixes an issue)
- [ ] New feature (non-breaking change that adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update
- [ ] Code refactoring
- [ ] Performance improvement
- [x] Other (please specify): CI improvement

## Screenshots/Videos (if applicable)
<!-- Add screenshots or videos to help explain your changes -->

## Pre-submission Checklist
<!-- Please check all boxes that apply before submitting your PR -->
- [ ] **I have tested my changes thoroughly before submitting this PR**
- [ ] **This PR contains minimal changes necessary to address the
issue/feature**
- [ ] My code follows the project's coding standards and style
guidelines
- [ ] I have added tests that prove my fix is effective or that my
feature works
- [ ] I have added necessary documentation (if applicable)
- [ ] All new and existing tests pass
- [ ] I have searched existing PRs to ensure this change hasn't been
submitted already
- [ ] I have linked any relevant issues in the description
- [ ] My commits have clear and descriptive messages

## DCO Affirmation
I affirm that all code in every commit of this pull request conforms to
the terms of the Topoteretes Developer Certificate of Origin.


<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit

* **Chores**
  * Made uv lockfile rebuilding optional in CI (disabled by default).
* Added a pre-validation workflow to check lockfile integrity before
tests.
* Ensured pre-test validation runs before basic and end-to-end test
jobs.
* Updated dependencies to support Python 3.13 with version-specific lxml
constraints and adjusted docs dependency structure.

<sub>✏️ Tip: You can customize this high-level summary in your review
settings.</sub>
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
This commit is contained in:
Pavel Zorin 2025-12-04 15:50:39 +01:00 • committed by GitHub
commit 386e0c8234
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GPG key ID: B5690EEEBB952194
6 changed files with 302 additions and 40 deletions
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5
.github/actions/cognee_setup/action.yml vendored
View file

@ -10,6 +10,10 @@ inputs:
description: "Additional extra dependencies to install (space-separated)"
required: false
default: ""
rebuild-lockfile:
description: "Whether to rebuild the uv lockfile"
required: false
default: "false"
runs:
using: "composite"
@ -26,6 +30,7 @@ runs:
enable-cache: true
- name: Rebuild uv lockfile
if: ${{ inputs.rebuild-lockfile == 'true' }}
shell: bash
run: |
rm uv.lock

22
.github/workflows/pre_test.yml vendored Normal file
View file

@ -0,0 +1,22 @@
on:
workflow_call:
permissions:
contents: read
jobs:
check-uv-lock:
name: Validate uv lockfile and project metadata
runs-on: ubuntu-22.04
steps:
- name: Check out repository
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Install uv
uses: astral-sh/setup-uv@v4
with:
enable-cache: true
- name: Validate uv lockfile and project metadata
run: uv lock --check || { echo "'uv lock --check' failed."; echo "Run 'uv lock' and push your changes."; exit 1; }

8
.github/workflows/test_suites.yml vendored
View file

@ -18,15 +18,21 @@ env:
RUNTIME__LOG_LEVEL: ERROR
ENV: 'dev'
jobs:
jobs:
pre-test:
name: basic checks
uses: ./.github/workflows/pre_test.yml
basic-tests:
name: Basic Tests
uses: ./.github/workflows/basic_tests.yml
needs: [ pre-test ]
secrets: inherit
e2e-tests:
name: End-to-End Tests
uses: ./.github/workflows/e2e_tests.yml
needs: [ pre-test ]
secrets: inherit
distributed-tests:

164
poetry.lock generated
View file

@ -1,4 +1,4 @@
# This file is automatically @generated by Poetry 2.1.3 and should not be changed by hand.
# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand.
[[package]]
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@ -10553,6 +10692,13 @@ optional = false
python-versions = ">=3.8"
groups = ["main"]
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@ -13177,7 +13323,7 @@ description = "Provider of IANA time zone data"
optional = true
python-versions = ">=2"
groups = ["main"]
markers = "(extra == \"scraping\" or extra == \"notebook\" or extra == \"dev\" or extra == \"docs\" or extra == \"evals\" or extra == \"docling\" or extra == \"dlt\") and (platform_system == \"Windows\" or extra == \"notebook\" or extra == \"dev\" or extra == \"docs\" or extra == \"evals\" or extra == \"docling\" or extra == \"dlt\")"
markers = "(platform_system == \"Windows\" or extra == \"notebook\" or extra == \"dev\" or extra == \"docs\" or extra == \"evals\" or extra == \"docling\" or extra == \"dlt\") and (extra == \"scraping\" or extra == \"notebook\" or extra == \"dev\" or extra == \"docs\" or extra == \"evals\" or extra == \"docling\" or extra == \"dlt\")"
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@ -13448,7 +13594,7 @@ description = "Fast implementation of asyncio event loop on top of libuv"
optional = true
python-versions = ">=3.8.1"
groups = ["main"]
markers = "sys_platform != \"win32\" and sys_platform != \"cygwin\" and extra == \"chromadb\" and platform_python_implementation != \"PyPy\""
markers = "platform_python_implementation != \"PyPy\" and extra == \"chromadb\" and sys_platform != \"win32\" and sys_platform != \"cygwin\""
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@ -14300,7 +14446,7 @@ dev = ["coverage", "deptry", "gitpython", "mkdocs-material", "mkdocs-minify-plug
distributed = ["modal"]
dlt = ["dlt"]
docling = ["docling", "transformers"]
docs = ["lxml", "unstructured"]
docs = ["lxml", "lxml", "unstructured"]
evals = ["gdown", "matplotlib", "pandas", "plotly", "scikit-learn"]
graphiti = ["graphiti-core"]
groq = ["groq"]
@ -14317,9 +14463,9 @@ postgres = ["asyncpg", "pgvector", "psycopg2"]
postgres-binary = ["asyncpg", "pgvector", "psycopg2-binary"]
posthog = ["posthog"]
redis = ["redis"]
scraping = ["APScheduler", "beautifulsoup4", "lxml", "playwright", "protego", "tavily-python"]
scraping = ["APScheduler", "beautifulsoup4", "lxml", "lxml", "playwright", "protego", "tavily-python"]
[metadata]
lock-version = "2.1"
python-versions = ">=3.10,<3.14"
content-hash = "4e044eddd2d2995cf28a413df341c62333fa4206df7088049fbc5e0ccc85f454"
content-hash = "6c8f26955a23ff510ddd0ba4eac4046fb2738e8b5787c5eb3b7abca91fec6905"

9
pyproject.toml
View file

@ -72,7 +72,8 @@ scraping = [
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"beautifulsoup4>=4.13.1",
"playwright>=1.9.0",
"lxml>=4.9.3",
"lxml>=4.9.3,<5 ; python_version < '3.13'",
"lxml>=5,<6 ; python_version >= '3.13'",
"protego>=0.1",
"APScheduler>=3.10.0,<=3.11.0"
]
@ -106,7 +107,11 @@ chromadb = [
"chromadb>=0.6,<0.7",
"pypika==0.48.9",
]
docs = ["lxml<6.0.0", "unstructured[csv, doc, docx, epub, md, odt, org, ppt, pptx, rst, rtf, tsv, xlsx, pdf]>=0.18.1,<19"]
docs = [
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"lxml>=5,<6 ; python_version >= '3.13'",
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134
uv.lock generated
View file

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