From 8499258272ad52a1b4a6f5cdce35f735a7d5f8dc Mon Sep 17 00:00:00 2001 From: vasilije Date: Sun, 28 Dec 2025 20:00:29 +0100 Subject: [PATCH 01/29] resolve jon doe issue --- cognee/infrastructure/llm/prompts/generate_graph_prompt.txt | 4 ++-- .../llm/prompts/generate_graph_prompt_guided.txt | 2 +- .../llm/prompts/generate_graph_prompt_oneshot.txt | 4 ++-- .../llm/prompts/generate_graph_prompt_simple.txt | 2 +- .../llm/prompts/generate_graph_prompt_strict.txt | 2 +- 5 files changed, 7 insertions(+), 7 deletions(-) diff --git a/cognee/infrastructure/llm/prompts/generate_graph_prompt.txt b/cognee/infrastructure/llm/prompts/generate_graph_prompt.txt index 6392cdc33..ce3317381 100644 --- a/cognee/infrastructure/llm/prompts/generate_graph_prompt.txt +++ b/cognee/infrastructure/llm/prompts/generate_graph_prompt.txt @@ -19,8 +19,8 @@ The aim is to achieve simplicity and clarity in the knowledge graph. - **Naming Convention**: Use snake_case for relationship names, e.g., `acted_in`. # 3. Coreference Resolution - **Maintain Entity Consistency**: When extracting entities, it's vital to ensure consistency. - If an entity, such as "John Doe", is mentioned multiple times in the text but is referred to by different names or pronouns (e.g., "Joe", "he"), - always use the most complete identifier for that entity throughout the knowledge graph. In this example, use "John Doe" as the Persons ID. + If an entity, is mentioned multiple times in the text but is referred to by different names or pronouns, + always use the most complete identifier for that entity throughout the knowledge graph. Remember, the knowledge graph should be coherent and easily understandable, so maintaining consistency in entity references is crucial. # 4. Strict Compliance Adhere to the rules strictly. Non-compliance will result in termination diff --git a/cognee/infrastructure/llm/prompts/generate_graph_prompt_guided.txt b/cognee/infrastructure/llm/prompts/generate_graph_prompt_guided.txt index a216b835f..b087755d3 100644 --- a/cognee/infrastructure/llm/prompts/generate_graph_prompt_guided.txt +++ b/cognee/infrastructure/llm/prompts/generate_graph_prompt_guided.txt @@ -22,7 +22,7 @@ You are an advanced algorithm designed to extract structured information to buil 3. **Coreference Resolution**: - Maintain one consistent node ID for each real-world entity. - Resolve aliases, acronyms, and pronouns to the most complete form. - - *Example*: Always use "John Doe" even if later referred to as "Doe" or "he". + - *Example*: Always use full identifier even if later referred to as in a similar but slightly different way **Property & Data Guidelines**: diff --git a/cognee/infrastructure/llm/prompts/generate_graph_prompt_oneshot.txt b/cognee/infrastructure/llm/prompts/generate_graph_prompt_oneshot.txt index adc31f469..6375e6eb1 100644 --- a/cognee/infrastructure/llm/prompts/generate_graph_prompt_oneshot.txt +++ b/cognee/infrastructure/llm/prompts/generate_graph_prompt_oneshot.txt @@ -42,10 +42,10 @@ You are an advanced algorithm designed to extract structured information from un - **Rule**: Resolve all aliases, acronyms, and pronouns to one canonical identifier. > **One-Shot Example**: -> **Input**: "John Doe is an author. Later, Doe published a book. He is well-known." +> **Input**: "X is an author. Later, Doe published a book. He is well-known." > **Output Node**: > ``` -> John Doe (Person) +> X (Person) > ``` --- diff --git a/cognee/infrastructure/llm/prompts/generate_graph_prompt_simple.txt b/cognee/infrastructure/llm/prompts/generate_graph_prompt_simple.txt index 4a166c027..177c9f34a 100644 --- a/cognee/infrastructure/llm/prompts/generate_graph_prompt_simple.txt +++ b/cognee/infrastructure/llm/prompts/generate_graph_prompt_simple.txt @@ -15,7 +15,7 @@ You are an advanced algorithm that extracts structured data into a knowledge gra - Properties are key-value pairs; do not use escaped quotes. 3. **Coreference Resolution** - - Use a single, complete identifier for each entity (e.g., always "John Doe" not "Joe" or "he"). + - Use a single, complete identifier for each entity 4. **Relationship Labels**: - Use descriptive, lowercase, snake_case names for edges. diff --git a/cognee/infrastructure/llm/prompts/generate_graph_prompt_strict.txt b/cognee/infrastructure/llm/prompts/generate_graph_prompt_strict.txt index a8191033f..08c117ee4 100644 --- a/cognee/infrastructure/llm/prompts/generate_graph_prompt_strict.txt +++ b/cognee/infrastructure/llm/prompts/generate_graph_prompt_strict.txt @@ -26,7 +26,7 @@ Use **basic atomic types** for node labels. Always prefer general types over spe - Good: "Alan Turing", "Google Inc.", "World War II" - Bad: "Entity_001", "1234", "he", "they" - Never use numeric or autogenerated IDs. -- Prioritize **most complete form** of entity names for consistency (e.g., always use "John Doe" instead of "John" or "he"). +- Prioritize **most complete form** of entity names for consistency 2. Dates, Numbers, and Properties --------------------------------- From ce685557bbe992e3474f536eb8afb09fb7211143 Mon Sep 17 00:00:00 2001 From: vasilije Date: Sun, 28 Dec 2025 20:26:47 +0100 Subject: [PATCH 02/29] added fix that raises error if database doesnt exist --- .../api/v1/search/routers/get_search_router.py | 15 ++++++++++++++- cognee/api/v1/search/search.py | 16 +++++++++++++++- 2 files changed, 29 insertions(+), 2 deletions(-) diff --git a/cognee/api/v1/search/routers/get_search_router.py b/cognee/api/v1/search/routers/get_search_router.py index 171c03e49..1aaed7f39 100644 --- a/cognee/api/v1/search/routers/get_search_router.py +++ b/cognee/api/v1/search/routers/get_search_router.py @@ -8,12 +8,14 @@ from fastapi.encoders import jsonable_encoder from cognee.modules.search.types import SearchType, SearchResult, CombinedSearchResult from cognee.api.DTO import InDTO, OutDTO -from cognee.modules.users.exceptions.exceptions import PermissionDeniedError +from cognee.modules.users.exceptions.exceptions import PermissionDeniedError, UserNotFoundError from cognee.modules.users.models import User from cognee.modules.search.operations import get_history from cognee.modules.users.methods import get_authenticated_user from cognee.shared.utils import send_telemetry from cognee import __version__ as cognee_version +from cognee.infrastructure.databases.exceptions import DatabaseNotCreatedError +from cognee.exceptions import CogneeValidationError # Note: Datasets sent by name will only map to datasets owned by the request sender @@ -138,6 +140,17 @@ def get_search_router() -> APIRouter: ) return jsonable_encoder(results) + except (DatabaseNotCreatedError, UserNotFoundError, CogneeValidationError) as e: + # Return a clear 422 with actionable guidance instead of leaking a stacktrace + status_code = getattr(e, "status_code", 422) + return JSONResponse( + status_code=status_code, + content={ + "error": "Search prerequisites not met", + "detail": str(e), + "hint": "Run `await cognee.add(...)` then `await cognee.cognify()` before searching.", + }, + ) except PermissionDeniedError: return [] except Exception as error: diff --git a/cognee/api/v1/search/search.py b/cognee/api/v1/search/search.py index 354331c57..ee7408758 100644 --- a/cognee/api/v1/search/search.py +++ b/cognee/api/v1/search/search.py @@ -11,6 +11,9 @@ from cognee.modules.data.methods import get_authorized_existing_datasets from cognee.modules.data.exceptions import DatasetNotFoundError from cognee.context_global_variables import set_session_user_context_variable from cognee.shared.logging_utils import get_logger +from cognee.infrastructure.databases.exceptions import DatabaseNotCreatedError +from cognee.exceptions import CogneeValidationError +from cognee.modules.users.exceptions.exceptions import UserNotFoundError logger = get_logger() @@ -176,7 +179,18 @@ async def search( datasets = [datasets] if user is None: - user = await get_default_user() + try: + user = await get_default_user() + except (DatabaseNotCreatedError, UserNotFoundError) as error: + # Provide a clear, actionable message instead of surfacing low-level stacktraces + raise CogneeValidationError( + message=( + "Search prerequisites not met: no database/default user found. " + "Initialize Cognee before searching by:\n" + "• running `await cognee.add(...)` followed by `await cognee.cognify()`." + ), + name="SearchPreconditionError", + ) from error await set_session_user_context_variable(user) From 295f623db3da55e047875a0b223f97e81e834d94 Mon Sep 17 00:00:00 2001 From: vasilije Date: Tue, 6 Jan 2026 17:47:54 +0100 Subject: [PATCH 03/29] fix security issue --- pyproject.toml | 1 + uv.lock | 90 +++++++++++++++++++++++++++++--------------------- 2 files changed, 54 insertions(+), 37 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 3b37c27c3..63c715dd0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -60,6 +60,7 @@ dependencies = [ "fakeredis[lua]>=2.32.0", "diskcache>=5.6.3", "aiolimiter>=1.2.1", + "cbor2>=5.8.0" ] [project.optional-dependencies] diff --git a/uv.lock b/uv.lock index c2d97aa12..390d1acb0 100644 --- a/uv.lock +++ b/uv.lock @@ -1,5 +1,4 @@ version = 1 -revision = 1 requires-python = ">=3.10, <3.14" resolution-markers = [ 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a/.github/pull_request_template.md +++ b/.github/pull_request_template.md @@ -24,8 +24,8 @@ DO NOT use AI-generated descriptions. We want to understand your thought process - [ ] Performance improvement - [ ] Other (please specify): -## Screenshots/Videos (if applicable) - +## Screenshots + ## Pre-submission Checklist From 555eef69e31c000b20d02a775908306de4e85b59 Mon Sep 17 00:00:00 2001 From: vasilije Date: Tue, 6 Jan 2026 17:53:42 +0100 Subject: [PATCH 05/29] added update to pr template --- .github/pull_request_template.md | 5 ----- 1 file changed, 5 deletions(-) diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md index 753ecd97d..8f914cfa7 100644 --- a/.github/pull_request_template.md +++ b/.github/pull_request_template.md @@ -10,18 +10,13 @@ DO NOT use AI-generated descriptions. We want to understand your thought process ## Type of Change - [ ] Bug fix (non-breaking change that fixes an issue) - [ ] New feature (non-breaking change that adds functionality) -- [ ] Breaking change (fix or feature that would cause existing functionality to change) -- [ ] Documentation update - [ ] Code refactoring -- [ ] Performance improvement - [ ] Other (please specify): ## Screenshots From f1f955b76a37fbac87ef47496d2759af67b253ce Mon Sep 17 00:00:00 2001 From: vasilije Date: Tue, 6 Jan 2026 18:03:43 +0100 Subject: [PATCH 06/29] fix --- cognee-frontend/package.json | 2 +- pyproject.toml | 3 + uv.lock | 216 ++++++++++++++++++++++------------- 3 files changed, 139 insertions(+), 82 deletions(-) diff --git a/cognee-frontend/package.json b/cognee-frontend/package.json index 525dbb61e..ed43ab99a 100644 --- a/cognee-frontend/package.json +++ b/cognee-frontend/package.json @@ -13,7 +13,7 @@ "classnames": "^2.5.1", "culori": "^4.0.1", "d3-force-3d": "^3.0.6", - "next": "^16.1.0", + 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Tue, 6 Jan 2026 18:05:34 +0100 Subject: [PATCH 07/29] reformat --- .../databases/vector/embeddings/LiteLLMEmbeddingEngine.py | 4 +++- cognee/modules/users/authentication/get_api_auth_backend.py | 2 +- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py index 28fa22b4f..7a1306bf8 100644 --- a/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py +++ b/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py @@ -134,7 +134,9 @@ class LiteLLMEmbeddingEngine(EmbeddingEngine): litellm.aembedding( model=self.model, input=text, - api_key=self.api_key if self.api_key and self.api_key.strip() != "" else "EMPTY", + api_key=self.api_key + if self.api_key and self.api_key.strip() != "" + else "EMPTY", api_base=self.endpoint, api_version=self.api_version, ), diff --git a/cognee/modules/users/authentication/get_api_auth_backend.py b/cognee/modules/users/authentication/get_api_auth_backend.py index ffb591a9d..799d118f9 100644 --- a/cognee/modules/users/authentication/get_api_auth_backend.py +++ b/cognee/modules/users/authentication/get_api_auth_backend.py @@ -20,7 +20,7 @@ def get_api_auth_backend(): lifetime_seconds = int(os.getenv("JWT_LIFETIME_SECONDS", "3600")) except ValueError: lifetime_seconds = 3600 - + return APIJWTStrategy(secret, lifetime_seconds=lifetime_seconds) auth_backend = AuthenticationBackend( From af72dd2fc28bda5839c4ba4e312d26a4f6e7a48f Mon Sep 17 00:00:00 2001 From: vasilije Date: Wed, 7 Jan 2026 16:26:36 +0100 Subject: [PATCH 08/29] fixes to ruff format --- .../databases/vector/embeddings/LiteLLMEmbeddingEngine.py | 4 +++- cognee/modules/users/authentication/get_api_auth_backend.py | 2 +- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py index 28fa22b4f..7a1306bf8 100644 --- a/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py +++ b/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py @@ -134,7 +134,9 @@ class LiteLLMEmbeddingEngine(EmbeddingEngine): litellm.aembedding( model=self.model, input=text, - api_key=self.api_key if self.api_key and self.api_key.strip() != "" else "EMPTY", + api_key=self.api_key + if self.api_key and self.api_key.strip() != "" + else "EMPTY", api_base=self.endpoint, api_version=self.api_version, ), diff --git a/cognee/modules/users/authentication/get_api_auth_backend.py b/cognee/modules/users/authentication/get_api_auth_backend.py index ffb591a9d..799d118f9 100644 --- a/cognee/modules/users/authentication/get_api_auth_backend.py +++ b/cognee/modules/users/authentication/get_api_auth_backend.py @@ -20,7 +20,7 @@ def get_api_auth_backend(): lifetime_seconds = int(os.getenv("JWT_LIFETIME_SECONDS", "3600")) except ValueError: lifetime_seconds = 3600 - + return APIJWTStrategy(secret, lifetime_seconds=lifetime_seconds) auth_backend = AuthenticationBackend( From 07b91f3a5f3d44fd25acc98fd03598de5b451e16 Mon Sep 17 00:00:00 2001 From: Igor Ilic Date: Thu, 8 Jan 2026 12:45:03 +0100 Subject: [PATCH 09/29] refactor: Remove comment from Dockerfile --- Dockerfile | 3 --- .../databases/vector/embeddings/LiteLLMEmbeddingEngine.py | 4 +--- 2 files changed, 1 insertion(+), 6 deletions(-) diff --git a/Dockerfile b/Dockerfile index 9130e60c1..49bb29445 100644 --- a/Dockerfile +++ b/Dockerfile @@ -16,9 +16,6 @@ ARG DEBUG # Set environment variable based on the build argument ENV DEBUG=${DEBUG} -# if you located in China, you can use aliyun mirror to speed up -#RUN sed -i 's@deb.debian.org@mirrors.ustc.edu.cn@g' /etc/apt/sources.list.d/debian.sources - # Install system dependencies RUN apt-get update && apt-get install -y \ gcc \ diff --git a/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py index 7a1306bf8..558b11538 100644 --- a/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py +++ b/cognee/infrastructure/databases/vector/embeddings/LiteLLMEmbeddingEngine.py @@ -134,9 +134,7 @@ class LiteLLMEmbeddingEngine(EmbeddingEngine): litellm.aembedding( model=self.model, input=text, - api_key=self.api_key - if self.api_key and self.api_key.strip() != "" - else "EMPTY", + api_key=self.api_key, api_base=self.endpoint, api_version=self.api_version, ), From f3215e16f90905687ece5b0505a1f32b0d5df88a Mon Sep 17 00:00:00 2001 From: Igor Ilic Date: Thu, 8 Jan 2026 12:51:11 +0100 Subject: [PATCH 10/29] refactor: Remove silent handling of lifetime assignment --- cognee/modules/users/authentication/get_api_auth_backend.py | 5 +---- .../modules/users/authentication/get_client_auth_backend.py | 5 +---- 2 files changed, 2 insertions(+), 8 deletions(-) diff --git a/cognee/modules/users/authentication/get_api_auth_backend.py b/cognee/modules/users/authentication/get_api_auth_backend.py index 799d118f9..6d39c7d8f 100644 --- a/cognee/modules/users/authentication/get_api_auth_backend.py +++ b/cognee/modules/users/authentication/get_api_auth_backend.py @@ -16,10 +16,7 @@ def get_api_auth_backend(): def get_jwt_strategy() -> JWTStrategy[models.UP, models.ID]: secret = os.getenv("FASTAPI_USERS_JWT_SECRET", "super_secret") - try: - lifetime_seconds = int(os.getenv("JWT_LIFETIME_SECONDS", "3600")) - except ValueError: - lifetime_seconds = 3600 + lifetime_seconds = int(os.getenv("JWT_LIFETIME_SECONDS", "3600")) return APIJWTStrategy(secret, lifetime_seconds=lifetime_seconds) diff --git a/cognee/modules/users/authentication/get_client_auth_backend.py b/cognee/modules/users/authentication/get_client_auth_backend.py index bf794377d..ba5dad2b3 100644 --- a/cognee/modules/users/authentication/get_client_auth_backend.py +++ b/cognee/modules/users/authentication/get_client_auth_backend.py @@ -18,10 +18,7 @@ def get_client_auth_backend(): from .default.default_jwt_strategy import DefaultJWTStrategy secret = os.getenv("FASTAPI_USERS_JWT_SECRET", "super_secret") - try: - lifetime_seconds = int(os.getenv("JWT_LIFETIME_SECONDS", "3600")) - except ValueError: - lifetime_seconds = 3600 + lifetime_seconds = int(os.getenv("JWT_LIFETIME_SECONDS", "3600")) return DefaultJWTStrategy(secret, lifetime_seconds=lifetime_seconds) From fd6a77deecc853e2a970b4d8569527aa24bae5b9 Mon Sep 17 00:00:00 2001 From: Igor Ilic Date: Thu, 8 Jan 2026 13:31:25 +0100 Subject: [PATCH 11/29] refactor: Add TODO for missing llm config parameters --- .../litellm_instructor/llm/get_llm_client.py | 1 + 1 file changed, 1 insertion(+) diff --git a/cognee/infrastructure/llm/structured_output_framework/litellm_instructor/llm/get_llm_client.py b/cognee/infrastructure/llm/structured_output_framework/litellm_instructor/llm/get_llm_client.py index dc0fd995a..1ddb9c480 100644 --- a/cognee/infrastructure/llm/structured_output_framework/litellm_instructor/llm/get_llm_client.py +++ b/cognee/infrastructure/llm/structured_output_framework/litellm_instructor/llm/get_llm_client.py @@ -194,6 +194,7 @@ def get_llm_client(raise_api_key_error: bool = True): ) # Get optional local mode parameters (will be None if not set) + # TODO: refactor llm_config to include these parameters, currently they cannot be defined and defaults are used model_path = getattr(llm_config, "llama_cpp_model_path", None) n_ctx = getattr(llm_config, "llama_cpp_n_ctx", 2048) n_gpu_layers = getattr(llm_config, "llama_cpp_n_gpu_layers", 0) From 1772439ea53c0141aa6395a71df4113b7adc1e55 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Thu, 8 Jan 2026 13:49:39 +0100 Subject: [PATCH 12/29] Update aiohttp version in pyproject.toml --- pyproject.toml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 16a56a7c2..8408094db 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -32,7 +32,7 @@ dependencies = [ "litellm>=1.76.0", "instructor>=1.9.1,<2.0.0", "filetype>=1.2.0,<2.0.0", - "aiohttp>=3.11.14,<4.0.0", + "aiohttp>=3.13.3,<4.0.0", "aiofiles>=23.2.1", "rdflib>=7.1.4,<7.2.0", "pypdf>=4.1.0,<7.0.0", @@ -60,8 +60,7 @@ dependencies = [ "fakeredis[lua]>=2.32.0", "diskcache>=5.6.3", "aiolimiter>=1.2.1", - "urllib3>=2.6.0", - "aiohttp>=3.13.3" + "urllib3>=2.6.0" ] [project.optional-dependencies] From 00697c4491f303f8376808c54df24f452c7eb3e8 Mon Sep 17 00:00:00 2001 From: Igor Ilic Date: Thu, 8 Jan 2026 14:21:05 +0100 Subject: [PATCH 13/29] chore: Update poetry lock --- poetry.lock | 72 ++++++++++++++++++++++++++++++++++++++++++++++++++++- 1 file changed, 71 insertions(+), 1 deletion(-) diff --git a/poetry.lock b/poetry.lock index e68695efe..7637811df 100644 --- a/poetry.lock +++ b/poetry.lock @@ -5292,6 +5292,36 @@ proxy = ["PyJWT (>=2.8.0,<3.0.0)", "apscheduler (>=3.10.4,<4.0.0)", "azure-ident semantic-router = ["semantic-router ; python_version >= \"3.9\""] utils = ["numpydoc"] +[[package]] +name = "llama-cpp-python" +version = "0.3.16" +description = "Python bindings for the llama.cpp library" +optional = true +python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"llama-cpp\"" +files = [ + {file = "llama_cpp_python-0.3.16.tar.gz", hash = "sha256:34ed0f9bd9431af045bb63d9324ae620ad0536653740e9bb163a2e1fcb973be6"}, +] + +[package.dependencies] +diskcache = ">=5.6.1" +fastapi = {version = ">=0.100.0", optional = true, markers = "extra == \"server\""} +jinja2 = ">=2.11.3" +numpy = ">=1.20.0" +pydantic-settings = {version = ">=2.0.1", optional = true, markers = "extra == \"server\""} +PyYAML = {version = ">=5.1", optional = true, markers = "extra == \"server\""} +sse-starlette = {version = ">=1.6.1", optional = true, markers = "extra == \"server\""} +starlette-context = {version = ">=0.3.6,<0.4", optional = true, markers = "extra == \"server\""} +typing-extensions = ">=4.5.0" +uvicorn = {version = ">=0.22.0", optional = true, markers = "extra == \"server\""} + +[package.extras] +all = ["llama_cpp_python[dev,server,test]"] +dev = ["black (>=23.3.0)", "httpx (>=0.24.1)", "mkdocs (>=1.4.3)", "mkdocs-material (>=9.1.18)", "mkdocstrings[python] (>=0.22.0)", "pytest (>=7.4.0)", "twine (>=4.0.2)"] +server = ["PyYAML (>=5.1)", "fastapi (>=0.100.0)", "pydantic-settings (>=2.0.1)", "sse-starlette (>=1.6.1)", "starlette-context (>=0.3.6,<0.4)", "uvicorn (>=0.22.0)"] +test = ["fastapi (>=0.100.0)", "httpx (>=0.24.1)", "huggingface-hub (>=0.23.0)", "pydantic-settings (>=2.0.1)", "pytest (>=7.4.0)", "scipy (>=1.10)", "sse-starlette (>=1.6.1)", "starlette-context (>=0.3.6,<0.4)"] + [[package]] name = "llama-index-core" version = "0.12.52.post1" @@ -12338,6 +12368,29 @@ files = [ dev = ["duckdb (>=0.6)", "maturin (>=1.4,<2.0)", "mypy", "pandas", "pandas-stubs", "pdoc", "pre-commit", "pyperf", "python-dateutil", "pytz", "ruff (==0.7.2)", "types-python-dateutil", "types-pytz", "typing_extensions"] rs = ["sqlglotrs (==0.7.3)"] +[[package]] +name = "sse-starlette" +version = "3.1.2" +description = "SSE plugin for Starlette" +optional = true +python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"llama-cpp\"" +files = [ + {file = "sse_starlette-3.1.2-py3-none-any.whl", hash = "sha256:cd800dd349f4521b317b9391d3796fa97b71748a4da9b9e00aafab32dda375c8"}, + {file = "sse_starlette-3.1.2.tar.gz", hash = "sha256:55eff034207a83a0eb86de9a68099bd0157838f0b8b999a1b742005c71e33618"}, +] + +[package.dependencies] +anyio = ">=4.7.0" +starlette = ">=0.49.1" + +[package.extras] +daphne = ["daphne (>=4.2.0)"] +examples = ["aiosqlite (>=0.21.0)", "fastapi (>=0.115.12)", "sqlalchemy[asyncio] (>=2.0.41)", "uvicorn (>=0.34.0)"] +granian = ["granian (>=2.3.1)"] +uvicorn = ["uvicorn (>=0.34.0)"] + [[package]] name = "stack-data" version = "0.6.3" @@ -12378,6 +12431,22 @@ typing-extensions = {version = ">=4.10.0", markers = "python_version < \"3.13\"" [package.extras] full = ["httpx (>=0.27.0,<0.29.0)", "itsdangerous", "jinja2", "python-multipart (>=0.0.18)", "pyyaml"] +[[package]] +name = "starlette-context" +version = "0.3.6" +description = "Middleware for Starlette that allows you to store and access the context data of a request. Can be used with logging so logs automatically use request headers such as x-request-id or x-correlation-id." +optional = true +python-versions = ">=3.8,<4.0" +groups = ["main"] +markers = "extra == \"llama-cpp\"" +files = [ + {file = "starlette_context-0.3.6-py3-none-any.whl", hash = "sha256:b14ce373fbb6895a2182a7104b9f63ba20c8db83444005fb9a844dd77ad9895c"}, + {file = "starlette_context-0.3.6.tar.gz", hash = "sha256:d361a36ba2d4acca3ab680f917b25e281533d725374752d47607a859041958cb"}, +] + +[package.dependencies] +starlette = "*" + [[package]] name = "structlog" version = "25.5.0" @@ -14428,6 +14497,7 @@ graphiti = ["graphiti-core"] groq = ["groq"] huggingface = ["transformers"] langchain = ["langchain_text_splitters", "langsmith"] +llama-cpp = ["llama-cpp-python"] llama-index = ["llama-index-core"] mistral = ["mistral-common"] monitoring = ["langfuse", "sentry-sdk"] @@ -14444,4 +14514,4 @@ scraping = ["APScheduler", "beautifulsoup4", "lxml", "lxml", "playwright", "prot [metadata] lock-version = "2.1" python-versions = ">=3.10,<3.14" -content-hash = "09f7040236a62a2d610e79e92394bb0c23e13ed41ba4de92c064ab4d5430b84e" +content-hash = "deb552cfd9e8752ae2513a420ec008d7acda2ddf9a93cde4abb95967451c3d36" From 7de3356b1f8cd217a9bbbef8ac595c333197902c Mon Sep 17 00:00:00 2001 From: Igor Ilic Date: Thu, 8 Jan 2026 14:28:39 +0100 Subject: [PATCH 14/29] fix: Resolve issue with migration order --- .../1a58b986e6e1_enable_delete_for_old_tutorial_notebooks.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/alembic/versions/1a58b986e6e1_enable_delete_for_old_tutorial_notebooks.py b/alembic/versions/1a58b986e6e1_enable_delete_for_old_tutorial_notebooks.py index f6a965c35..2d5d099a1 100644 --- a/alembic/versions/1a58b986e6e1_enable_delete_for_old_tutorial_notebooks.py +++ b/alembic/versions/1a58b986e6e1_enable_delete_for_old_tutorial_notebooks.py @@ -14,7 +14,7 @@ import sqlalchemy as sa # revision identifiers, used by Alembic. revision: str = "1a58b986e6e1" -down_revision: Union[str, None] = "46a6ce2bd2b2" +down_revision: Union[str, None] = "e1ec1dcb50b6" branch_labels: Union[str, Sequence[str], None] = None depends_on: Union[str, Sequence[str], None] = None From 1eb4197f1ac9d640ea94cca485d06879d6f3e4b2 Mon Sep 17 00:00:00 2001 From: vasilije Date: Thu, 8 Jan 2026 16:05:36 +0100 Subject: [PATCH 15/29] add uv lock --- uv.lock | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/uv.lock b/uv.lock index 951992d5c..931c18c54 100644 --- a/uv.lock +++ b/uv.lock @@ -1126,8 +1126,7 @@ scraping = [ [package.metadata] requires-dist = [ { name = "aiofiles", specifier = ">=23.2.1" }, - { name = "aiohttp", specifier = ">=3.11.14,<4.0.0" }, - { name = "aiohttp", specifier = ">=3.13.3" }, + { name = "aiohttp", specifier = ">=3.13.3,<4.0.0" }, { name = "aiolimiter", specifier = ">=1.2.1" }, { name = "aiosqlite", specifier = ">=0.20.0,<1.0.0" }, { name = "alembic", specifier = ">=1.13.3,<2" }, From 7a48e22b13e58dbb12d0a4a4e230dfd4c5204ed4 Mon Sep 17 00:00:00 2001 From: Pavel Zorin Date: Thu, 8 Jan 2026 17:15:53 +0100 Subject: [PATCH 16/29] chore: Remove trailing whitespaces in the project, fix YAMLs --- .coderabbit.yaml | 6 ++--- .gitguardian.yml | 2 +- .github/ISSUE_TEMPLATE/bug_report.yml | 16 ++++++------ .github/ISSUE_TEMPLATE/documentation.yml | 13 +++++----- .github/ISSUE_TEMPLATE/feature_request.yml | 15 +++++------ .github/actions/setup_neo4j/action.yml | 8 +++--- .github/core-team.txt | 2 -- .github/release-drafter.yml | 2 +- .../disable_independent_workflows.sh | 24 ++++++++--------- .github/workflows/dockerhub.yml | 2 +- .github/workflows/label-core-team.yml | 2 -- .github/workflows/load_tests.yml | 2 -- .github/workflows/pre_test.yml | 2 +- .github/workflows/release.yml | 26 +++++++++---------- .github/workflows/release_test.yml | 1 - .../test_different_operating_systems.yml | 2 +- .github/workflows/test_llms.yml | 2 +- .github/workflows/test_suites.yml | 4 +-- .mergify.yml | 2 +- .pre-commit-config.yaml | 1 + AGENTS.md | 2 -- CONTRIBUTING.md | 10 +++---- README.md | 12 ++++----- alembic/README | 2 +- assets/community/README.pt.md | 10 +++---- assets/community/README.ru.md | 2 +- assets/community/README.zh.md | 2 +- cognee-frontend/package.json | 2 +- .../src/app/(graph)/CogneeAddWidget.tsx | 2 +- .../src/app/(graph)/GraphControls.tsx | 2 +- .../src/app/(graph)/GraphVisualization.tsx | 10 +++---- .../src/app/(graph)/example_data.json | 2 +- .../src/app/dashboard/DatasetsAccordion.tsx | 2 +- cognee-frontend/src/app/plan/Plan.tsx | 2 +- .../src/modules/chat/hooks/useChat.ts | 2 +- .../src/modules/ingestion/useDatasets.ts | 2 +- .../src/modules/notebooks/createNotebook.ts | 2 +- .../src/modules/notebooks/getNotebooks.ts | 2 +- .../src/modules/notebooks/saveNotebook.ts | 2 +- cognee-frontend/src/ui/Icons/GitHubIcon.tsx | 2 +- cognee-frontend/src/ui/Layout/Header.tsx | 2 +- .../src/ui/Partials/SearchView/SearchView.tsx | 4 +-- .../src/ui/elements/Modal/index.ts | 1 - .../ui/elements/Notebook/MarkdownPreview.tsx | 1 - .../src/ui/elements/Notebook/Notebook.tsx | 2 +- cognee-frontend/src/ui/elements/TextArea.tsx | 4 +-- cognee-frontend/src/ui/elements/index.ts | 2 +- cognee-frontend/src/utils/fetch.ts | 6 ++--- cognee-mcp/README.md | 14 +++++----- cognee-mcp/entrypoint.sh | 16 ++++++------ cognee-starter-kit/.env.template | 2 +- cognee-starter-kit/README.md | 4 +-- cognee/api/.env.example | 2 +- cognee/api/v1/sync/routers/get_sync_router.py | 6 ++--- cognee/cli/commands/add_command.py | 2 +- cognee/cli/commands/config_command.py | 2 +- .../NeptuneAnalyticsAdapter.py | 4 +-- .../llm/prompts/extract_query_time.txt | 2 +- .../prompts/generate_event_entity_prompt.txt | 2 +- .../prompts/generate_event_graph_prompt.txt | 2 +- .../prompts/search_type_selector_prompt.txt | 12 ++++----- cognee/infrastructure/llm/prompts/test.txt | 2 +- .../data/copilot_conversations.json | 1 - .../data/guido_contributions.json | 2 +- .../data/my_developer_rules.md | 2 +- .../data/pep_style_guide.md | 1 - .../data/zen_principles.md | 1 - cognee/modules/retrieval/__init__.py | 1 - cognee/tasks/temporal_graph/__init__.py | 1 - cognee/tests/test_cleanup_unused_data.py | 8 +++--- cognee/tests/test_delete_by_id.py | 12 ++++----- deployment/helm/README.md | 2 +- deployment/helm/docker-compose-helm.yml | 1 - .../helm/templates/postgres_service.yaml | 1 - evals/requirements.txt | 2 +- examples/data/car_and_tech_companies.txt | 2 +- .../neptune_analytics_example.py | 8 +++--- examples/low_level/product_recommendation.py | 4 +-- examples/python/temporal_example.py | 12 ++++----- .../python/weighted_graph_visualization.html | 17 ++++++------ mise.toml | 2 ++ mypy.ini | 2 +- ...ne_analytics_aws_database_configuration.py | 8 +++--- .../data/companies.json | 1 - .../organizational_hierarchy/data/people.json | 1 - .../data/customers.json | 1 - .../product_recommendation_example.py | 4 +-- .../demos/temporal_awareness_example.py | 12 ++++----- tools/check-package.sh | 1 - tools/poetry-deps.sh | 2 +- 90 files changed, 196 insertions(+), 218 deletions(-) create mode 100644 mise.toml diff --git a/.coderabbit.yaml b/.coderabbit.yaml index 0cad35c84..38cd529ee 100644 --- a/.coderabbit.yaml +++ b/.coderabbit.yaml @@ -3,7 +3,7 @@ language: en early_access: false enable_free_tier: true -reviews: +reviews: profile: chill instructions: >- # Code Review Instructions @@ -118,10 +118,10 @@ reviews: - E117 - D208 line_length: 100 - dummy_variable_rgx: '^(_.*|junk|extra)$' # Variables starting with '_' or named 'junk' or 'extras', are considered dummy variables + dummy_variable_rgx: '^(_.*|junk|extra)$' # Variables starting with '_' or named 'junk' or 'extras', are considered dummy variables markdownlint: enabled: true yamllint: enabled: true chat: - auto_reply: true \ No newline at end of file + auto_reply: true diff --git a/.gitguardian.yml b/.gitguardian.yml index 5a5808340..f84e8ce15 100644 --- a/.gitguardian.yml +++ b/.gitguardian.yml @@ -28,4 +28,4 @@ secret-scan: - path: 'docker-compose.yml' comment: 'Development docker compose with test credentials (neo4j/pleaseletmein, postgres cognee/cognee)' - path: 'deployment/helm/docker-compose-helm.yml' - comment: 'Helm deployment docker compose with test postgres credentials (cognee/cognee)' \ No newline at end of file + comment: 'Helm deployment docker compose with test postgres credentials (cognee/cognee)' diff --git a/.github/ISSUE_TEMPLATE/bug_report.yml b/.github/ISSUE_TEMPLATE/bug_report.yml index 5a6d7b124..115553f69 100644 --- a/.github/ISSUE_TEMPLATE/bug_report.yml +++ b/.github/ISSUE_TEMPLATE/bug_report.yml @@ -8,7 +8,7 @@ body: attributes: value: | Thanks for taking the time to fill out this bug report! Please provide a clear and detailed description. - + - type: textarea id: description attributes: @@ -17,7 +17,7 @@ body: placeholder: Describe the bug in detail... validations: required: true - + - type: textarea id: reproduction attributes: @@ -29,7 +29,7 @@ body: 3. See error... validations: required: true - + - type: textarea id: expected attributes: @@ -38,7 +38,7 @@ body: placeholder: Describe what you expected... validations: required: true - + - type: textarea id: actual attributes: @@ -47,7 +47,7 @@ body: placeholder: Describe what actually happened... validations: required: true - + - type: textarea id: environment attributes: @@ -61,7 +61,7 @@ body: - Database: [e.g. Neo4j] validations: required: true - + - type: textarea id: logs attributes: @@ -71,7 +71,7 @@ body: render: shell validations: required: false - + - type: textarea id: additional attributes: @@ -80,7 +80,7 @@ body: placeholder: Any additional information... validations: required: false - + - type: checkboxes id: checklist attributes: diff --git a/.github/ISSUE_TEMPLATE/documentation.yml b/.github/ISSUE_TEMPLATE/documentation.yml index b01459ac6..546634aac 100644 --- a/.github/ISSUE_TEMPLATE/documentation.yml +++ b/.github/ISSUE_TEMPLATE/documentation.yml @@ -8,7 +8,7 @@ body: attributes: value: | Thanks for helping improve our documentation! Please provide details about the documentation issue or improvement. - + - type: dropdown id: doc-type attributes: @@ -22,7 +22,7 @@ body: - New documentation request validations: required: true - + - type: textarea id: location attributes: @@ -31,7 +31,7 @@ body: placeholder: https://cognee.ai/docs/... or specific file/section validations: required: true - + - type: textarea id: issue attributes: @@ -40,7 +40,7 @@ body: placeholder: The documentation is unclear about... validations: required: true - + - type: textarea id: suggestion attributes: @@ -49,7 +49,7 @@ body: placeholder: I suggest changing this to... validations: required: false - + - type: textarea id: additional attributes: @@ -58,7 +58,7 @@ body: placeholder: Additional context... validations: required: false - + - type: checkboxes id: checklist attributes: @@ -71,4 +71,3 @@ body: required: true - label: I have specified the location of the documentation issue required: true - diff --git a/.github/ISSUE_TEMPLATE/feature_request.yml b/.github/ISSUE_TEMPLATE/feature_request.yml index cf743e6e4..d7bfdf902 100644 --- a/.github/ISSUE_TEMPLATE/feature_request.yml +++ b/.github/ISSUE_TEMPLATE/feature_request.yml @@ -8,7 +8,7 @@ body: attributes: value: | Thanks for suggesting a new feature! Please provide a clear and detailed description of your idea. - + - type: textarea id: problem attributes: @@ -17,7 +17,7 @@ body: placeholder: I'm always frustrated when... validations: required: true - + - type: textarea id: solution attributes: @@ -26,7 +26,7 @@ body: placeholder: I would like to see... validations: required: true - + - type: textarea id: alternatives attributes: @@ -35,7 +35,7 @@ body: placeholder: I have also considered... validations: required: false - + - type: textarea id: use-case attributes: @@ -44,7 +44,7 @@ body: placeholder: This feature would help me... validations: required: true - + - type: textarea id: implementation attributes: @@ -53,7 +53,7 @@ body: placeholder: This could be implemented by... validations: required: false - + - type: textarea id: additional attributes: @@ -62,7 +62,7 @@ body: placeholder: Additional context... validations: required: false - + - type: checkboxes id: checklist attributes: @@ -75,4 +75,3 @@ body: required: true - label: I have described my specific use case required: true - diff --git a/.github/actions/setup_neo4j/action.yml b/.github/actions/setup_neo4j/action.yml index 20b7726b1..8685efc61 100644 --- a/.github/actions/setup_neo4j/action.yml +++ b/.github/actions/setup_neo4j/action.yml @@ -34,14 +34,14 @@ runs: -e NEO4J_apoc_export_file_enabled=true \ -e NEO4J_apoc_import_file_enabled=true \ neo4j:${{ inputs.neo4j-version }} - + - name: Wait for Neo4j to be ready shell: bash run: | echo "Waiting for Neo4j to start..." timeout=60 counter=0 - + while [ $counter -lt $timeout ]; do if docker exec neo4j-test cypher-shell -u neo4j -p "${{ inputs.neo4j-password }}" "RETURN 1" > /dev/null 2>&1; then echo "Neo4j is ready!" @@ -51,13 +51,13 @@ runs: sleep 2 counter=$((counter + 2)) done - + if [ $counter -ge $timeout ]; then echo "Neo4j failed to start within $timeout seconds" docker logs neo4j-test exit 1 fi - + - name: Verify GDS is available shell: bash run: | diff --git a/.github/core-team.txt b/.github/core-team.txt index 2e69a268c..ce8d83e87 100644 --- a/.github/core-team.txt +++ b/.github/core-team.txt @@ -8,5 +8,3 @@ lxobr pazone siillee vasilije1990 - - diff --git a/.github/release-drafter.yml b/.github/release-drafter.yml index 8acf0a601..1df30ce66 100644 --- a/.github/release-drafter.yml +++ b/.github/release-drafter.yml @@ -3,7 +3,7 @@ tag-template: 'v$NEXT_PATCH_VERSION' categories: - title: 'Features' - labels: ['feature', 'enhancement'] + labels: ['feature', 'enhancement'] - title: 'Bug Fixes' labels: ['bug', 'fix'] - title: 'Maintenance' diff --git a/.github/workflows/disable_independent_workflows.sh b/.github/workflows/disable_independent_workflows.sh index ff57da80d..042ce2b82 100755 --- a/.github/workflows/disable_independent_workflows.sh +++ b/.github/workflows/disable_independent_workflows.sh @@ -31,54 +31,54 @@ WORKFLOWS=( for workflow in "${WORKFLOWS[@]}"; do if [ -f "$workflow" ]; then echo "Processing $workflow..." - + # Create a backup cp "$workflow" "${workflow}.bak" - + # Check if the file begins with a workflow_call trigger if grep -q "workflow_call:" "$workflow"; then echo "$workflow already has workflow_call trigger, skipping..." continue fi - + # Get the content after the 'on:' section on_line=$(grep -n "^on:" "$workflow" | cut -d ':' -f1) - + if [ -z "$on_line" ]; then echo "Warning: No 'on:' section found in $workflow, skipping..." continue fi - + # Create a new file with the modified content { # Copy the part before 'on:' head -n $((on_line-1)) "$workflow" - + # Add the new on: section that only includes workflow_call echo "on:" echo " workflow_call:" echo " secrets:" echo " inherit: true" - + # Find where to continue after the original 'on:' section next_section=$(awk "NR > $on_line && /^[a-z]/ {print NR; exit}" "$workflow") - + if [ -z "$next_section" ]; then next_section=$(wc -l < "$workflow") next_section=$((next_section+1)) fi - + # Copy the rest of the file starting from the next section tail -n +$next_section "$workflow" } > "${workflow}.new" - + # Replace the original with the new version mv "${workflow}.new" "$workflow" - + echo "Modified $workflow to only run when called from test-suites.yml" else echo "Warning: $workflow not found, skipping..." fi done -echo "Finished modifying workflows!" \ No newline at end of file +echo "Finished modifying workflows!" diff --git a/.github/workflows/dockerhub.yml b/.github/workflows/dockerhub.yml index 8ed7e802a..107272852 100644 --- a/.github/workflows/dockerhub.yml +++ b/.github/workflows/dockerhub.yml @@ -45,4 +45,4 @@ jobs: cache-to: type=registry,ref=cognee/cognee:buildcache,mode=max - name: Image digest - run: echo ${{ steps.build.outputs.digest }} \ No newline at end of file + run: echo ${{ steps.build.outputs.digest }} diff --git a/.github/workflows/label-core-team.yml b/.github/workflows/label-core-team.yml index 8e32923d1..869f48247 100644 --- a/.github/workflows/label-core-team.yml +++ b/.github/workflows/label-core-team.yml @@ -72,5 +72,3 @@ jobs: } catch (error) { core.warning(`Failed to add label: ${error.message}`); } - - diff --git a/.github/workflows/load_tests.yml b/.github/workflows/load_tests.yml index f5b64d8ce..7e81179a6 100644 --- a/.github/workflows/load_tests.yml +++ b/.github/workflows/load_tests.yml @@ -66,5 +66,3 @@ jobs: AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_DEV_USER_KEY_ID }} AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_DEV_USER_SECRET_KEY }} run: uv run python ./cognee/tests/test_load.py - - diff --git a/.github/workflows/pre_test.yml b/.github/workflows/pre_test.yml index e15173cb4..115313eac 100644 --- a/.github/workflows/pre_test.yml +++ b/.github/workflows/pre_test.yml @@ -17,6 +17,6 @@ jobs: uses: astral-sh/setup-uv@v4 with: enable-cache: true - + - name: Validate uv lockfile and project metadata run: uv lock --check || { echo "'uv lock --check' failed."; echo "Run 'uv lock' and push your changes."; exit 1; } diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 26ccce1f0..f594b4c5a 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -42,10 +42,10 @@ jobs: echo "tag=${TAG}" >> "$GITHUB_OUTPUT" echo "version=${VERSION}" >> "$GITHUB_OUTPUT" - + git tag "${TAG}" git push origin "${TAG}" - + - name: Create GitHub Release uses: softprops/action-gh-release@v2 @@ -54,8 +54,8 @@ jobs: generate_release_notes: true env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} - - release-pypi-package: + + release-pypi-package: needs: release-github name: Release PyPI Package from ${{ inputs.flavour }} permissions: @@ -67,25 +67,25 @@ jobs: uses: actions/checkout@v4 with: ref: ${{ inputs.flavour }} - + - name: Install uv uses: astral-sh/setup-uv@v7 - + - name: Install Python run: uv python install - + - name: Install dependencies run: uv sync --locked --all-extras - + - name: Build distributions run: uv build - + - name: Publish ${{ inputs.flavour }} release to PyPI env: UV_PUBLISH_TOKEN: ${{ secrets.PYPI_TOKEN }} run: uv publish - - release-docker-image: + + release-docker-image: needs: release-github name: Release Docker Image from ${{ inputs.flavour }} permissions: @@ -128,7 +128,7 @@ jobs: context: . platforms: linux/amd64,linux/arm64 push: true - tags: | + tags: | cognee/cognee:${{ needs.release-github.outputs.version }} cognee/cognee:latest labels: | @@ -163,4 +163,4 @@ jobs: -H "Authorization: Bearer ${{ secrets.REPO_DISPATCH_PAT_TOKEN }}" \ -H "X-GitHub-Api-Version: 2022-11-28" \ https://api.github.com/repos/topoteretes/cognee-community/dispatches \ - -d '{"event_type":"new-main-release","client_payload":{"caller_repo":"'"${GITHUB_REPOSITORY}"'"}}' \ No newline at end of file + -d '{"event_type":"new-main-release","client_payload":{"caller_repo":"'"${GITHUB_REPOSITORY}"'"}}' diff --git a/.github/workflows/release_test.yml b/.github/workflows/release_test.yml index b31b431a4..9797c1e2d 100644 --- a/.github/workflows/release_test.yml +++ b/.github/workflows/release_test.yml @@ -15,4 +15,3 @@ jobs: name: Load Tests uses: ./.github/workflows/load_tests.yml secrets: inherit - diff --git a/.github/workflows/test_different_operating_systems.yml b/.github/workflows/test_different_operating_systems.yml index 02651b474..5a08ba6a0 100644 --- a/.github/workflows/test_different_operating_systems.yml +++ b/.github/workflows/test_different_operating_systems.yml @@ -10,7 +10,7 @@ on: required: false type: string default: '["3.10.x", "3.12.x", "3.13.x"]' - os: + os: required: false type: string default: '["ubuntu-22.04", "macos-15", "windows-latest"]' diff --git a/.github/workflows/test_llms.yml b/.github/workflows/test_llms.yml index 8f9d30d10..245406172 100644 --- a/.github/workflows/test_llms.yml +++ b/.github/workflows/test_llms.yml @@ -173,4 +173,4 @@ jobs: EMBEDDING_MODEL: "amazon.titan-embed-text-v2:0" EMBEDDING_DIMENSIONS: "1024" EMBEDDING_MAX_TOKENS: "8191" - run: uv run python ./examples/python/simple_example.py \ No newline at end of file + run: uv run python ./examples/python/simple_example.py diff --git a/.github/workflows/test_suites.yml b/.github/workflows/test_suites.yml index 27f4508e0..a1e3ff9e6 100644 --- a/.github/workflows/test_suites.yml +++ b/.github/workflows/test_suites.yml @@ -18,11 +18,11 @@ env: RUNTIME__LOG_LEVEL: ERROR ENV: 'dev' -jobs: +jobs: pre-test: name: basic checks uses: ./.github/workflows/pre_test.yml - + basic-tests: name: Basic Tests uses: ./.github/workflows/basic_tests.yml diff --git a/.mergify.yml b/.mergify.yml index 55a2c4345..c8aef74bf 100644 --- a/.mergify.yml +++ b/.mergify.yml @@ -6,4 +6,4 @@ pull_request_rules: actions: backport: branches: - - main \ No newline at end of file + - main diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 54d0a7d94..40a577496 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -7,6 +7,7 @@ repos: - id: trailing-whitespace - id: end-of-file-fixer - id: check-yaml + exclude: ^deployment/helm/templates/ - id: check-added-large-files - repo: https://github.com/astral-sh/ruff-pre-commit # Ruff version. diff --git a/AGENTS.md b/AGENTS.md index 4cadfbdc1..2a8b7af76 100644 --- a/AGENTS.md +++ b/AGENTS.md @@ -128,5 +128,3 @@ MCP server and Frontend: ## CI Mirrors Local Commands Our GitHub Actions run the same ruff checks and pytest suites shown above (`.github/workflows/basic_tests.yml` and related workflows). Use the commands in this document locally to minimize CI surprises. - - diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 87e3dc91c..2e8ed4aa9 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,16 +1,16 @@ > [!IMPORTANT] > **Note for contributors:** When branching out, create a new branch from the `dev` branch. -# 🎉 Welcome to **cognee**! +# 🎉 Welcome to **cognee**! -We're excited that you're interested in contributing to our project! -We want to ensure that every user and contributor feels welcome, included and supported to participate in cognee community. +We're excited that you're interested in contributing to our project! +We want to ensure that every user and contributor feels welcome, included and supported to participate in cognee community. This guide will help you get started and ensure your contributions can be efficiently integrated into the project. ## 🌟 Quick Links - [Code of Conduct](CODE_OF_CONDUCT.md) -- [Discord Community](https://discord.gg/bcy8xFAtfd) +- [Discord Community](https://discord.gg/bcy8xFAtfd) - [Issue Tracker](https://github.com/topoteretes/cognee/issues) - [Cognee Docs](https://docs.cognee.ai) @@ -106,7 +106,7 @@ Make sure to run ```shell uv sync ``` in the root cloned folder or set up a virt ```shell python cognee/cognee/examples/python/simple_example.py ``` -or +or ```shell uv run python cognee/cognee/examples/python/simple_example.py diff --git a/README.md b/README.md index 9fd5635ae..ebcaa414f 100644 --- a/README.md +++ b/README.md @@ -65,12 +65,12 @@ Use your data to build personalized and dynamic memory for AI Agents. Cognee let ## About Cognee -Cognee is an open-source tool and platform that transforms your raw data into persistent and dynamic AI memory for Agents. It combines vector search with graph databases to make your documents both searchable by meaning and connected by relationships. +Cognee is an open-source tool and platform that transforms your raw data into persistent and dynamic AI memory for Agents. It combines vector search with graph databases to make your documents both searchable by meaning and connected by relationships. You can use Cognee in two ways: 1. [Self-host Cognee Open Source](https://docs.cognee.ai/getting-started/installation), which stores all data locally by default. -2. [Connect to Cognee Cloud](https://platform.cognee.ai/), and get the same OSS stack on managed infrastructure for easier development and productionization. +2. [Connect to Cognee Cloud](https://platform.cognee.ai/), and get the same OSS stack on managed infrastructure for easier development and productionization. ### Cognee Open Source (self-hosted): @@ -81,8 +81,8 @@ You can use Cognee in two ways: - Offers high customizability through user-defined tasks, modular pipelines, and built-in search endpoints ### Cognee Cloud (managed): -- Hosted web UI dashboard -- Automatic version updates +- Hosted web UI dashboard +- Automatic version updates - Resource usage analytics - GDPR compliant, enterprise-grade security @@ -119,7 +119,7 @@ To integrate other LLM providers, see our [LLM Provider Documentation](https://d ### Step 3: Run the Pipeline -Cognee will take your documents, generate a knowledge graph from them and then query the graph based on combined relationships. +Cognee will take your documents, generate a knowledge graph from them and then query the graph based on combined relationships. Now, run a minimal pipeline: @@ -157,7 +157,7 @@ As you can see, the output is generated from the document we previously stored i Cognee turns documents into AI memory. ``` -### Use the Cognee CLI +### Use the Cognee CLI As an alternative, you can get started with these essential commands: diff --git a/alembic/README b/alembic/README index e0d0858f2..a23d4fb51 100644 --- a/alembic/README +++ b/alembic/README @@ -1 +1 @@ -Generic single-database configuration with an async dbapi. \ No newline at end of file +Generic single-database configuration with an async dbapi. diff --git a/assets/community/README.pt.md b/assets/community/README.pt.md index f42f8c0b0..3a089e3e1 100644 --- a/assets/community/README.pt.md +++ b/assets/community/README.pt.md @@ -43,10 +43,10 @@ Saiba mais sobre os [casos de uso](https://docs.cognee.ai/use-cases) e [avaliaç ## Funcionalidades -- Conecte e recupere suas conversas passadas, documentos, imagens e transcrições de áudio -- Reduza alucinações, esforço de desenvolvimento e custos -- Carregue dados em bancos de dados de grafos e vetores usando apenas Pydantic -- Transforme e organize seus dados enquanto os coleta de mais de 30 fontes diferentes +- Conecte e recupere suas conversas passadas, documentos, imagens e transcrições de áudio +- Reduza alucinações, esforço de desenvolvimento e custos +- Carregue dados em bancos de dados de grafos e vetores usando apenas Pydantic +- Transforme e organize seus dados enquanto os coleta de mais de 30 fontes diferentes ## Primeiros Passos @@ -108,7 +108,7 @@ if __name__ == '__main__': Exemplo do output: ``` O Processamento de Linguagem Natural (NLP) é um campo interdisciplinar e transdisciplinar que envolve ciência da computação e recuperação de informações. Ele se concentra na interação entre computadores e a linguagem humana, permitindo que as máquinas compreendam e processem a linguagem natural. - + ``` Visualização do grafo: diff --git a/assets/community/README.ru.md b/assets/community/README.ru.md index c5a7b4a48..8e7a98479 100644 --- a/assets/community/README.ru.md +++ b/assets/community/README.ru.md @@ -141,7 +141,7 @@ if __name__ == '__main__': 2. Простая демонстрация GraphRAG [Видео](https://github.com/user-attachments/assets/d80b0776-4eb9-4b8e-aa22-3691e2d44b8f) -3. Cognee с Ollama +3. Cognee с Ollama [Видео](https://github.com/user-attachments/assets/8621d3e8-ecb8-4860-afb2-5594f2ee17db) ## Правила поведения diff --git a/assets/community/README.zh.md b/assets/community/README.zh.md index 573a77b31..e002b1f22 100644 --- a/assets/community/README.zh.md +++ b/assets/community/README.zh.md @@ -114,7 +114,7 @@ if __name__ == '__main__': 示例输出： ``` 自然语言处理（NLP）是计算机科学和信息检索的跨学科领域。它关注计算机和人类语言之间的交互，使机器能够理解和处理自然语言。 - + ``` 图形可视化： 图形可视化 diff --git a/cognee-frontend/package.json b/cognee-frontend/package.json index 525dbb61e..bc19f515b 100644 --- a/cognee-frontend/package.json +++ b/cognee-frontend/package.json @@ -34,4 +34,4 @@ "tailwindcss": "^4.1.7", "typescript": "^5" } -} \ No newline at end of file +} diff --git a/cognee-frontend/src/app/(graph)/CogneeAddWidget.tsx b/cognee-frontend/src/app/(graph)/CogneeAddWidget.tsx index 3efdb47af..597978953 100644 --- a/cognee-frontend/src/app/(graph)/CogneeAddWidget.tsx +++ b/cognee-frontend/src/app/(graph)/CogneeAddWidget.tsx @@ -55,7 +55,7 @@ export default function CogneeAddWidget({ onData, useCloud = false }: CogneeAddW setTrue: setProcessingFilesInProgress, setFalse: setProcessingFilesDone, } = useBoolean(false); - + const handleAddFiles = (dataset: Dataset, event: ChangeEvent) => { event.stopPropagation(); diff --git a/cognee-frontend/src/app/(graph)/GraphControls.tsx b/cognee-frontend/src/app/(graph)/GraphControls.tsx index e83fb1107..edb8fb5fc 100644 --- a/cognee-frontend/src/app/(graph)/GraphControls.tsx +++ b/cognee-frontend/src/app/(graph)/GraphControls.tsx @@ -111,7 +111,7 @@ export default function GraphControls({ data, isAddNodeFormOpen, onGraphShapeCha const [isAuthShapeChangeEnabled, setIsAuthShapeChangeEnabled] = useState(true); const shapeChangeTimeout = useRef(null); - + useEffect(() => { onGraphShapeChange(DEFAULT_GRAPH_SHAPE); diff --git a/cognee-frontend/src/app/(graph)/GraphVisualization.tsx b/cognee-frontend/src/app/(graph)/GraphVisualization.tsx index db4494d73..23cfab918 100644 --- a/cognee-frontend/src/app/(graph)/GraphVisualization.tsx +++ b/cognee-frontend/src/app/(graph)/GraphVisualization.tsx @@ -57,7 +57,7 @@ export default function GraphVisualization({ ref, data, graphControls, className // Initial size calculation handleResize(); - // ResizeObserver + // ResizeObserver const resizeObserver = new ResizeObserver(() => { handleResize(); }); @@ -216,7 +216,7 @@ export default function GraphVisualization({ ref, data, graphControls, className }, [data, graphRef]); const [graphShape, setGraphShape] = useState(); - + const zoomToFit: ForceGraphMethods["zoomToFit"] = ( durationMs?: number, padding?: number, @@ -227,15 +227,15 @@ export default function GraphVisualization({ ref, data, graphControls, className // eslint-disable-next-line @typescript-eslint/no-explicit-any return undefined as any; } - + return graphRef.current.zoomToFit?.(durationMs, padding, nodeFilter); }; - + useImperativeHandle(ref, () => ({ zoomToFit, setGraphShape, })); - + return (
diff --git a/cognee-frontend/src/app/(graph)/example_data.json b/cognee-frontend/src/app/(graph)/example_data.json index 74095afd6..98f4c5ca4 100644 --- a/cognee-frontend/src/app/(graph)/example_data.json +++ b/cognee-frontend/src/app/(graph)/example_data.json @@ -1373,4 +1373,4 @@ "padding": 20 } } -} \ No newline at end of file +} diff --git a/cognee-frontend/src/app/dashboard/DatasetsAccordion.tsx b/cognee-frontend/src/app/dashboard/DatasetsAccordion.tsx index 0c764ef92..69cdbc277 100644 --- a/cognee-frontend/src/app/dashboard/DatasetsAccordion.tsx +++ b/cognee-frontend/src/app/dashboard/DatasetsAccordion.tsx @@ -134,7 +134,7 @@ export default function DatasetsAccordion({ } = useBoolean(false); const [datasetToRemove, setDatasetToRemove] = useState(null); - + const handleDatasetRemove = (dataset: Dataset) => { setDatasetToRemove(dataset); openRemoveDatasetModal(); diff --git a/cognee-frontend/src/app/plan/Plan.tsx b/cognee-frontend/src/app/plan/Plan.tsx index 3fd181270..8dfcc470f 100644 --- a/cognee-frontend/src/app/plan/Plan.tsx +++ b/cognee-frontend/src/app/plan/Plan.tsx @@ -45,7 +45,7 @@ export default function Plan() {
Affordable and transparent pricing
- +
Basic
diff --git a/cognee-frontend/src/modules/chat/hooks/useChat.ts b/cognee-frontend/src/modules/chat/hooks/useChat.ts index ed5bc4d79..be6ab8e51 100644 --- a/cognee-frontend/src/modules/chat/hooks/useChat.ts +++ b/cognee-frontend/src/modules/chat/hooks/useChat.ts @@ -40,7 +40,7 @@ export default function useChat(dataset: Dataset) { setTrue: disableSearchRun, setFalse: enableSearchRun, } = useBoolean(false); - + const refreshChat = useCallback(async () => { const data = await fetchMessages(); return setMessages(data); diff --git a/cognee-frontend/src/modules/ingestion/useDatasets.ts b/cognee-frontend/src/modules/ingestion/useDatasets.ts index ab8006a9f..9e9cb8fc0 100644 --- a/cognee-frontend/src/modules/ingestion/useDatasets.ts +++ b/cognee-frontend/src/modules/ingestion/useDatasets.ts @@ -46,7 +46,7 @@ function useDatasets(useCloud = false) { // checkDatasetStatuses(datasets); // }, 50000); // }, [fetchDatasetStatuses]); - + // useEffect(() => { // return () => { // if (statusTimeout.current !== null) { diff --git a/cognee-frontend/src/modules/notebooks/createNotebook.ts b/cognee-frontend/src/modules/notebooks/createNotebook.ts index b7c1279ec..270a932ad 100644 --- a/cognee-frontend/src/modules/notebooks/createNotebook.ts +++ b/cognee-frontend/src/modules/notebooks/createNotebook.ts @@ -7,7 +7,7 @@ export default function createNotebook(notebookName: string, instance: CogneeIns headers: { "Content-Type": "application/json", }, - }).then((response: Response) => + }).then((response: Response) => response.ok ? response.json() : Promise.reject(response) ); } diff --git a/cognee-frontend/src/modules/notebooks/getNotebooks.ts b/cognee-frontend/src/modules/notebooks/getNotebooks.ts index 1951012e7..2f6afa817 100644 --- a/cognee-frontend/src/modules/notebooks/getNotebooks.ts +++ b/cognee-frontend/src/modules/notebooks/getNotebooks.ts @@ -6,7 +6,7 @@ export default function getNotebooks(instance: CogneeInstance) { headers: { "Content-Type": "application/json", }, - }).then((response: Response) => + }).then((response: Response) => response.ok ? response.json() : Promise.reject(response) ); } diff --git a/cognee-frontend/src/modules/notebooks/saveNotebook.ts b/cognee-frontend/src/modules/notebooks/saveNotebook.ts index a99ff5be1..58a042300 100644 --- a/cognee-frontend/src/modules/notebooks/saveNotebook.ts +++ b/cognee-frontend/src/modules/notebooks/saveNotebook.ts @@ -7,7 +7,7 @@ export default function saveNotebook(notebookId: string, notebookData: object, i headers: { "Content-Type": "application/json", }, - }).then((response: Response) => + }).then((response: Response) => response.ok ? response.json() : Promise.reject(response) ); } diff --git a/cognee-frontend/src/ui/Icons/GitHubIcon.tsx b/cognee-frontend/src/ui/Icons/GitHubIcon.tsx index 590b2c217..76b34a81f 100644 --- a/cognee-frontend/src/ui/Icons/GitHubIcon.tsx +++ b/cognee-frontend/src/ui/Icons/GitHubIcon.tsx @@ -7,4 +7,4 @@ export default function GitHubIcon({ width = 24, height = 24, color = 'currentCo ); -} \ No newline at end of file +} diff --git a/cognee-frontend/src/ui/Layout/Header.tsx b/cognee-frontend/src/ui/Layout/Header.tsx index 1bc57f699..53f053f2e 100644 --- a/cognee-frontend/src/ui/Layout/Header.tsx +++ b/cognee-frontend/src/ui/Layout/Header.tsx @@ -46,7 +46,7 @@ export default function Header({ user }: HeaderProps) { checkMCPConnection(); const interval = setInterval(checkMCPConnection, 30000); - + return () => clearInterval(interval); }, [setMCPConnected, setMCPDisconnected]); diff --git a/cognee-frontend/src/ui/Partials/SearchView/SearchView.tsx b/cognee-frontend/src/ui/Partials/SearchView/SearchView.tsx index 8b471dd51..c9a2c328a 100644 --- a/cognee-frontend/src/ui/Partials/SearchView/SearchView.tsx +++ b/cognee-frontend/src/ui/Partials/SearchView/SearchView.tsx @@ -90,7 +90,7 @@ export default function SearchView() { scrollToBottom(); setSearchInputValue(""); - + // Pass topK to sendMessage sendMessage(chatInput, searchType, topK) .then(scrollToBottom) @@ -171,4 +171,4 @@ export default function SearchView() {
); -} \ No newline at end of file +} diff --git a/cognee-frontend/src/ui/elements/Modal/index.ts b/cognee-frontend/src/ui/elements/Modal/index.ts index 6386401d6..b4740f10c 100644 --- a/cognee-frontend/src/ui/elements/Modal/index.ts +++ b/cognee-frontend/src/ui/elements/Modal/index.ts @@ -1,3 +1,2 @@ export { default as Modal } from "./Modal"; export { default as useModal } from "./useModal"; - diff --git a/cognee-frontend/src/ui/elements/Notebook/MarkdownPreview.tsx b/cognee-frontend/src/ui/elements/Notebook/MarkdownPreview.tsx index 6ea69bfc6..9e9f82a2e 100644 --- a/cognee-frontend/src/ui/elements/Notebook/MarkdownPreview.tsx +++ b/cognee-frontend/src/ui/elements/Notebook/MarkdownPreview.tsx @@ -74,4 +74,3 @@ function MarkdownPreview({ content, className = "" }: MarkdownPreviewProps) { } export default memo(MarkdownPreview); - diff --git a/cognee-frontend/src/ui/elements/Notebook/Notebook.tsx b/cognee-frontend/src/ui/elements/Notebook/Notebook.tsx index b6b935229..3ddafe728 100644 --- a/cognee-frontend/src/ui/elements/Notebook/Notebook.tsx +++ b/cognee-frontend/src/ui/elements/Notebook/Notebook.tsx @@ -534,7 +534,7 @@ function transformInsightsGraphData(triplets: Triplet[]) { target: string, label: string, } - } = {}; + } = {}; for (const triplet of triplets) { nodes[triplet[0].id] = { diff --git a/cognee-frontend/src/ui/elements/TextArea.tsx b/cognee-frontend/src/ui/elements/TextArea.tsx index 4e8b36457..0a901bcc7 100644 --- a/cognee-frontend/src/ui/elements/TextArea.tsx +++ b/cognee-frontend/src/ui/elements/TextArea.tsx @@ -34,8 +34,8 @@ export default function TextArea({ // Cache maxHeight on first calculation if (maxHeightRef.current === null) { const computedStyle = getComputedStyle(textarea); - maxHeightRef.current = computedStyle.maxHeight === "none" - ? Infinity + maxHeightRef.current = computedStyle.maxHeight === "none" + ? Infinity : parseInt(computedStyle.maxHeight) || Infinity; } diff --git a/cognee-frontend/src/ui/elements/index.ts b/cognee-frontend/src/ui/elements/index.ts index 0133f56f6..73dd661e1 100644 --- a/cognee-frontend/src/ui/elements/index.ts +++ b/cognee-frontend/src/ui/elements/index.ts @@ -10,4 +10,4 @@ export { default as NeutralButton } from "./NeutralButton"; export { default as StatusIndicator } from "./StatusIndicator"; export { default as StatusDot } from "./StatusDot"; export { default as Accordion } from "./Accordion"; -export { default as Notebook } from "./Notebook"; +export { default as Notebook } from "./Notebook"; diff --git a/cognee-frontend/src/utils/fetch.ts b/cognee-frontend/src/utils/fetch.ts index 3159c8426..4e1b40e4b 100644 --- a/cognee-frontend/src/utils/fetch.ts +++ b/cognee-frontend/src/utils/fetch.ts @@ -57,7 +57,7 @@ export default async function fetch(url: string, options: RequestInit = {}, useC new Error("Backend server is not responding. Please check if the server is running.") ); } - + if (error.detail === undefined) { return Promise.reject( new Error("No connection to the server.") @@ -74,7 +74,7 @@ export default async function fetch(url: string, options: RequestInit = {}, useC fetch.checkHealth = async () => { const maxRetries = 5; const retryDelay = 1000; // 1 second - + for (let i = 0; i < maxRetries; i++) { try { const response = await global.fetch(`${backendApiUrl.replace("/api", "")}/health`); @@ -90,7 +90,7 @@ fetch.checkHealth = async () => { await new Promise(resolve => setTimeout(resolve, retryDelay)); } } - + throw new Error("Backend server is not responding after multiple attempts"); }; diff --git a/cognee-mcp/README.md b/cognee-mcp/README.md index ccfd37928..85363b2c6 100644 --- a/cognee-mcp/README.md +++ b/cognee-mcp/README.md @@ -105,14 +105,14 @@ If you'd rather run cognee-mcp in a container, you have two options: ```bash # For HTTP transport (recommended for web deployments) docker run -e TRANSPORT_MODE=http --env-file ./.env -p 8000:8000 --rm -it cognee/cognee-mcp:main - # For SSE transport + # For SSE transport docker run -e TRANSPORT_MODE=sse --env-file ./.env -p 8000:8000 --rm -it cognee/cognee-mcp:main # For stdio transport (default) docker run -e TRANSPORT_MODE=stdio --env-file ./.env --rm -it cognee/cognee-mcp:main ``` - + **Installing optional dependencies at runtime:** - + You can install optional dependencies when running the container by setting the `EXTRAS` environment variable: ```bash # Install a single optional dependency group at runtime @@ -122,7 +122,7 @@ If you'd rather run cognee-mcp in a container, you have two options: --env-file ./.env \ -p 8000:8000 \ --rm -it cognee/cognee-mcp:main - + # Install multiple optional dependency groups at runtime (comma-separated) docker run \ -e TRANSPORT_MODE=sse \ @@ -131,7 +131,7 @@ If you'd rather run cognee-mcp in a container, you have two options: -p 8000:8000 \ --rm -it cognee/cognee-mcp:main ``` - + **Available optional dependency groups:** - `aws` - S3 storage support - `postgres` / `postgres-binary` - PostgreSQL database support @@ -160,7 +160,7 @@ If you'd rather run cognee-mcp in a container, you have two options: # With stdio transport (default) docker run -e TRANSPORT_MODE=stdio --env-file ./.env --rm -it cognee/cognee-mcp:main ``` - + **With runtime installation of optional dependencies:** ```bash # Install optional dependencies from Docker Hub image @@ -357,7 +357,7 @@ You can configure both transports simultaneously for testing: "url": "http://localhost:8000/sse" }, "cognee-http": { - "type": "http", + "type": "http", "url": "http://localhost:8000/mcp" } } diff --git a/cognee-mcp/entrypoint.sh b/cognee-mcp/entrypoint.sh index cf7d19f0a..b4df5ba00 100644 --- a/cognee-mcp/entrypoint.sh +++ b/cognee-mcp/entrypoint.sh @@ -7,11 +7,11 @@ echo "Environment: $ENVIRONMENT" # Install optional dependencies if EXTRAS is set if [ -n "$EXTRAS" ]; then echo "Installing optional dependencies: $EXTRAS" - + # Get the cognee version that's currently installed COGNEE_VERSION=$(uv pip show cognee | grep "Version:" | awk '{print $2}') echo "Current cognee version: $COGNEE_VERSION" - + # Build the extras list for cognee IFS=',' read -ra EXTRA_ARRAY <<< "$EXTRAS" # Combine base extras from pyproject.toml with requested extras @@ -28,11 +28,11 @@ if [ -n "$EXTRAS" ]; then fi fi done - + echo "Installing cognee with extras: $ALL_EXTRAS" echo "Running: uv pip install 'cognee[$ALL_EXTRAS]==$COGNEE_VERSION'" uv pip install "cognee[$ALL_EXTRAS]==$COGNEE_VERSION" - + # Verify installation echo "" echo "✓ Optional dependencies installation completed" @@ -93,19 +93,19 @@ if [ -n "$API_URL" ]; then if echo "$API_URL" | grep -q "localhost" || echo "$API_URL" | grep -q "127.0.0.1"; then echo "⚠️ Warning: API_URL contains localhost/127.0.0.1" echo " Original: $API_URL" - + # Try to use host.docker.internal (works on Mac/Windows and recent Linux with Docker Desktop) FIXED_API_URL=$(echo "$API_URL" | sed 's/localhost/host.docker.internal/g' | sed 's/127\.0\.0\.1/host.docker.internal/g') - + echo " Converted to: $FIXED_API_URL" echo " This will work on Mac/Windows/Docker Desktop." echo " On Linux without Docker Desktop, you may need to:" echo " - Use --network host, OR" echo " - Set API_URL=http://172.17.0.1:8000 (Docker bridge IP)" - + API_URL="$FIXED_API_URL" fi - + API_ARGS="--api-url $API_URL" if [ -n "$API_TOKEN" ]; then API_ARGS="$API_ARGS --api-token $API_TOKEN" diff --git a/cognee-starter-kit/.env.template b/cognee-starter-kit/.env.template index 1aefd2739..d895c16ed 100644 --- a/cognee-starter-kit/.env.template +++ b/cognee-starter-kit/.env.template @@ -16,4 +16,4 @@ EMBEDDING_API_VERSION="" GRAPHISTRY_USERNAME="" -GRAPHISTRY_PASSWORD="" \ No newline at end of file +GRAPHISTRY_PASSWORD="" diff --git a/cognee-starter-kit/README.md b/cognee-starter-kit/README.md index 9cdcd5795..e47a1c270 100644 --- a/cognee-starter-kit/README.md +++ b/cognee-starter-kit/README.md @@ -14,7 +14,7 @@ This starter kit is deprecated. Its examples have been integrated into the `/new # Cognee Starter Kit Welcome to the cognee Starter Repo! This repository is designed to help you get started quickly by providing a structured dataset and pre-built data pipelines using cognee to build powerful knowledge graphs. -You can use this repo to ingest, process, and visualize data in minutes. +You can use this repo to ingest, process, and visualize data in minutes. By following this guide, you will: @@ -80,7 +80,7 @@ Custom model uses custom pydantic model for graph extraction. This script catego python src/pipelines/custom-model.py ``` -## Graph preview +## Graph preview cognee provides a visualize_graph function that will render the graph for you. diff --git a/cognee/api/.env.example b/cognee/api/.env.example index 1e06871df..ad08f6e4e 100644 --- a/cognee/api/.env.example +++ b/cognee/api/.env.example @@ -2,4 +2,4 @@ # Example: # CORS_ALLOWED_ORIGINS="https://yourdomain.com,https://another.com" # For local development, you might use: -# CORS_ALLOWED_ORIGINS="http://localhost:3000" \ No newline at end of file +# CORS_ALLOWED_ORIGINS="http://localhost:3000" diff --git a/cognee/api/v1/sync/routers/get_sync_router.py b/cognee/api/v1/sync/routers/get_sync_router.py index a7d466c10..fe974649a 100644 --- a/cognee/api/v1/sync/routers/get_sync_router.py +++ b/cognee/api/v1/sync/routers/get_sync_router.py @@ -71,7 +71,7 @@ def get_sync_router() -> APIRouter: -H "Content-Type: application/json" \\ -H "Cookie: auth_token=your-token" \\ -d '{"dataset_ids": ["123e4567-e89b-12d3-a456-426614174000", "456e7890-e12b-34c5-d678-901234567000"]}' - + # Sync all user datasets (empty request body or null dataset_ids) curl -X POST "http://localhost:8000/api/v1/sync" \\ -H "Content-Type: application/json" \\ @@ -88,7 +88,7 @@ def get_sync_router() -> APIRouter: - **413 Payload Too Large**: Dataset too large for current cloud plan - **429 Too Many Requests**: Rate limit exceeded - ## Notes + ## Notes - Sync operations run in the background - you get an immediate response - Use the returned run_id to track progress (status API coming soon) - Large datasets are automatically chunked for efficient transfer @@ -179,7 +179,7 @@ def get_sync_router() -> APIRouter: ``` ## Example Responses - + **No running syncs:** ```json { diff --git a/cognee/cli/commands/add_command.py b/cognee/cli/commands/add_command.py index e05998ec5..f3eee26a8 100644 --- a/cognee/cli/commands/add_command.py +++ b/cognee/cli/commands/add_command.py @@ -21,7 +21,7 @@ binary streams, then stores them in a specified dataset for further processing. Supported Input Types: - **Text strings**: Direct text content -- **File paths**: Local file paths (absolute paths starting with "/") +- **File paths**: Local file paths (absolute paths starting with "/") - **File URLs**: "file:///absolute/path" or "file://relative/path" - **S3 paths**: "s3://bucket-name/path/to/file" - **Lists**: Multiple files or text strings in a single call diff --git a/cognee/cli/commands/config_command.py b/cognee/cli/commands/config_command.py index 752db6403..a0d18ec7b 100644 --- a/cognee/cli/commands/config_command.py +++ b/cognee/cli/commands/config_command.py @@ -17,7 +17,7 @@ The `cognee config` command allows you to view and modify configuration settings You can: - View all current configuration settings -- Get specific configuration values +- Get specific configuration values - Set configuration values - Unset (reset to default) specific configuration values - Reset all configuration to defaults diff --git a/cognee/infrastructure/databases/hybrid/neptune_analytics/NeptuneAnalyticsAdapter.py b/cognee/infrastructure/databases/hybrid/neptune_analytics/NeptuneAnalyticsAdapter.py index 1e16642b5..72a1fac01 100644 --- a/cognee/infrastructure/databases/hybrid/neptune_analytics/NeptuneAnalyticsAdapter.py +++ b/cognee/infrastructure/databases/hybrid/neptune_analytics/NeptuneAnalyticsAdapter.py @@ -290,7 +290,7 @@ class NeptuneAnalyticsAdapter(NeptuneGraphDB, VectorDBInterface): query_string = f""" CALL neptune.algo.vectors.topKByEmbeddingWithFiltering({{ topK: {limit}, - embedding: {embedding}, + embedding: {embedding}, nodeFilter: {{ equals: {{property: '{self._COLLECTION_PREFIX}', value: '{collection_name}'}} }} }} ) @@ -299,7 +299,7 @@ class NeptuneAnalyticsAdapter(NeptuneGraphDB, VectorDBInterface): if with_vector: query_string += """ - WITH node, score, id(node) as node_id + WITH node, score, id(node) as node_id MATCH (n) WHERE id(n) = id(node) CALL neptune.algo.vectors.get(n) diff --git a/cognee/infrastructure/llm/prompts/extract_query_time.txt b/cognee/infrastructure/llm/prompts/extract_query_time.txt index ce78c3471..b87c845a7 100644 --- a/cognee/infrastructure/llm/prompts/extract_query_time.txt +++ b/cognee/infrastructure/llm/prompts/extract_query_time.txt @@ -10,4 +10,4 @@ Extraction rules: 5. Current-time references ("now", "current", "today"): If the query explicitly refers to the present, set both starts_at and ends_at to now (the ingestion timestamp). 6. "Who is" and "Who was" questions: These imply a general identity or biographical inquiry without a specific temporal scope. Set both starts_at and ends_at to None. 7. Ordering rule: Always ensure the earlier date is assigned to starts_at and the later date to ends_at. -8. No temporal information: If no valid or inferable time reference is found, set both starts_at and ends_at to None. \ No newline at end of file +8. No temporal information: If no valid or inferable time reference is found, set both starts_at and ends_at to None. diff --git a/cognee/infrastructure/llm/prompts/generate_event_entity_prompt.txt b/cognee/infrastructure/llm/prompts/generate_event_entity_prompt.txt index 7a34ef25b..a193dec8d 100644 --- a/cognee/infrastructure/llm/prompts/generate_event_entity_prompt.txt +++ b/cognee/infrastructure/llm/prompts/generate_event_entity_prompt.txt @@ -22,4 +22,4 @@ The `attributes` should be a list of dictionaries, each containing: - Relationships should be technical with one or at most two words. If two words, use underscore camelcase style - Relationships could imply general meaning like: subject, object, participant, recipient, agent, instrument, tool, source, cause, effect, purpose, manner, resource, etc. - You can combine two words to form a relationship name: subject_role, previous_owner, etc. -- Focus on how the entity specifically relates to the event \ No newline at end of file +- Focus on how the entity specifically relates to the event diff --git a/cognee/infrastructure/llm/prompts/generate_event_graph_prompt.txt b/cognee/infrastructure/llm/prompts/generate_event_graph_prompt.txt index c81ae6d3d..c0d64a0ea 100644 --- a/cognee/infrastructure/llm/prompts/generate_event_graph_prompt.txt +++ b/cognee/infrastructure/llm/prompts/generate_event_graph_prompt.txt @@ -27,4 +27,4 @@ class Event(BaseModel): time_from: Optional[Timestamp] = None time_to: Optional[Timestamp] = None location: Optional[str] = None -``` \ No newline at end of file +``` diff --git a/cognee/infrastructure/llm/prompts/search_type_selector_prompt.txt b/cognee/infrastructure/llm/prompts/search_type_selector_prompt.txt index 1a00bce7e..7804a3030 100644 --- a/cognee/infrastructure/llm/prompts/search_type_selector_prompt.txt +++ b/cognee/infrastructure/llm/prompts/search_type_selector_prompt.txt @@ -2,12 +2,12 @@ You are an expert query analyzer for a **GraphRAG system**. Your primary goal is Here are the available `SearchType` tools and their specific functions: -- **`SUMMARIES`**: The `SUMMARIES` search type retrieves summarized information from the knowledge graph. +- **`SUMMARIES`**: The `SUMMARIES` search type retrieves summarized information from the knowledge graph. - **Best for:** + **Best for:** - - Getting concise overviews of topics - - Summarizing large amounts of information + - Getting concise overviews of topics + - Summarizing large amounts of information - Quick understanding of complex subjects **Best for:** @@ -16,7 +16,7 @@ Here are the available `SearchType` tools and their specific functions: - Understanding relationships between concepts - Exploring the structure of your knowledge graph -* **`CHUNKS`**: The `CHUNKS` search type retrieves specific facts and information chunks from the knowledge graph. +* **`CHUNKS`**: The `CHUNKS` search type retrieves specific facts and information chunks from the knowledge graph. **Best for:** @@ -122,4 +122,4 @@ Response: `NATURAL_LANGUAGE` -Your response MUST be a single word, consisting of only the chosen `SearchType` name. Do not provide any explanation. \ No newline at end of file +Your response MUST be a single word, consisting of only the chosen `SearchType` name. Do not provide any explanation. diff --git a/cognee/infrastructure/llm/prompts/test.txt b/cognee/infrastructure/llm/prompts/test.txt index 529a11d86..265acebc7 100644 --- a/cognee/infrastructure/llm/prompts/test.txt +++ b/cognee/infrastructure/llm/prompts/test.txt @@ -1 +1 @@ -Respond with: test \ No newline at end of file +Respond with: test diff --git a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/copilot_conversations.json b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/copilot_conversations.json index 9471928c2..dcab8ddc6 100644 --- a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/copilot_conversations.json +++ b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/copilot_conversations.json @@ -105,4 +105,3 @@ } } } - diff --git a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/guido_contributions.json b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/guido_contributions.json index 918486b8c..6424d7a55 100644 --- a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/guido_contributions.json +++ b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/guido_contributions.json @@ -973,4 +973,4 @@ "python_version": null, "pep_status": null } -] \ No newline at end of file +] diff --git a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/my_developer_rules.md b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/my_developer_rules.md index 18a7ba18d..751fda2bd 100644 --- a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/my_developer_rules.md +++ b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/my_developer_rules.md @@ -76,4 +76,4 @@ Section: Open Questions or TODOs Create a checklist of unresolved decisions, logic that needs clarification, or tasks that are still pending. Section: Last Updated -Include the most recent update date and who made the update. \ No newline at end of file +Include the most recent update date and who made the update. diff --git a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/pep_style_guide.md b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/pep_style_guide.md index 8982d7e81..bc6466324 100644 --- a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/pep_style_guide.md +++ b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/pep_style_guide.md @@ -72,4 +72,3 @@ profile = "black" - E501: line too long -> break with parentheses - E225: missing whitespace around operator - E402: module import not at top of file - diff --git a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/zen_principles.md b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/zen_principles.md index bbcb4e56d..d49dc9c13 100644 --- a/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/zen_principles.md +++ b/cognee/modules/notebooks/tutorials/python-development-with-cognee/data/zen_principles.md @@ -72,4 +72,3 @@ Use modules/packages to separate concerns; avoid wildcard imports. - Is this the simplest working solution? - Are errors explicit and logged? - Are modules/namespaces used appropriately? - diff --git a/cognee/modules/retrieval/__init__.py b/cognee/modules/retrieval/__init__.py index 8b1378917..e69de29bb 100644 --- a/cognee/modules/retrieval/__init__.py +++ b/cognee/modules/retrieval/__init__.py @@ -1 +0,0 @@ - diff --git a/cognee/tasks/temporal_graph/__init__.py b/cognee/tasks/temporal_graph/__init__.py index 8b1378917..e69de29bb 100644 --- a/cognee/tasks/temporal_graph/__init__.py +++ b/cognee/tasks/temporal_graph/__init__.py @@ -1 +0,0 @@ - diff --git a/cognee/tests/test_cleanup_unused_data.py b/cognee/tests/test_cleanup_unused_data.py index fa5c174c2..abb6d8f3e 100644 --- a/cognee/tests/test_cleanup_unused_data.py +++ b/cognee/tests/test_cleanup_unused_data.py @@ -46,10 +46,10 @@ async def test_textdocument_cleanup_with_sql(): # Step 1: Add and cognify a test document dataset_name = "test_cleanup_dataset" - test_text = """ - Machine learning is a subset of artificial intelligence that enables systems to learn - and improve from experience without being explicitly programmed. Deep learning uses - neural networks with multiple layers to process data. + test_text = """ + Machine learning is a subset of artificial intelligence that enables systems to learn + and improve from experience without being explicitly programmed. Deep learning uses + neural networks with multiple layers to process data. """ await setup() diff --git a/cognee/tests/test_delete_by_id.py b/cognee/tests/test_delete_by_id.py index 8fc5395eb..90b2d6b42 100644 --- a/cognee/tests/test_delete_by_id.py +++ b/cognee/tests/test_delete_by_id.py @@ -47,20 +47,20 @@ async def main(): # Test data text_1 = """ - Apple Inc. is an American multinational technology company that specializes in consumer electronics, - software, and online services. Apple is the world's largest technology company by revenue and, + Apple Inc. is an American multinational technology company that specializes in consumer electronics, + software, and online services. Apple is the world's largest technology company by revenue and, since January 2021, the world's most valuable company. """ text_2 = """ - Microsoft Corporation is an American multinational technology corporation which produces computer software, - consumer electronics, personal computers, and related services. Its best known software products are the + Microsoft Corporation is an American multinational technology corporation which produces computer software, + consumer electronics, personal computers, and related services. Its best known software products are the Microsoft Windows line of operating systems and the Microsoft Office suite. """ text_3 = """ - Google LLC is an American multinational technology company that specializes in Internet-related services and products, - which include online advertising technologies, search engine, cloud computing, software, and hardware. Google has been + Google LLC is an American multinational technology company that specializes in Internet-related services and products, + which include online advertising technologies, search engine, cloud computing, software, and hardware. Google has been referred to as the most powerful company in the world and one of the world's most valuable brands. """ diff --git a/deployment/helm/README.md b/deployment/helm/README.md index b7aaa6325..6ee79cc80 100644 --- a/deployment/helm/README.md +++ b/deployment/helm/README.md @@ -19,7 +19,7 @@ Clone the Repository Clone this repository to your local machine and navigate t helm install cognee ./cognee-chart ``` -**Uninstall Helm Release**: +**Uninstall Helm Release**: ```bash helm uninstall cognee ``` diff --git a/deployment/helm/docker-compose-helm.yml b/deployment/helm/docker-compose-helm.yml index 8aaa63816..90c3ca206 100644 --- a/deployment/helm/docker-compose-helm.yml +++ b/deployment/helm/docker-compose-helm.yml @@ -43,4 +43,3 @@ networks: volumes: postgres_data: - diff --git a/deployment/helm/templates/postgres_service.yaml b/deployment/helm/templates/postgres_service.yaml index 7a944a128..c1195fcaa 100644 --- a/deployment/helm/templates/postgres_service.yaml +++ b/deployment/helm/templates/postgres_service.yaml @@ -11,4 +11,3 @@ spec: targetPort: {{ .Values.postgres.port }} selector: app: {{ .Release.Name }}-postgres - diff --git a/evals/requirements.txt b/evals/requirements.txt index cb11af255..97b3ea3e7 100644 --- a/evals/requirements.txt +++ b/evals/requirements.txt @@ -3,4 +3,4 @@ numpy==1.26.4 matplotlib==3.10.0 seaborn==0.13.2 scipy==1.11.4 -pathlib \ No newline at end of file +pathlib diff --git a/examples/data/car_and_tech_companies.txt b/examples/data/car_and_tech_companies.txt index 699f9812d..154232d86 100644 --- a/examples/data/car_and_tech_companies.txt +++ b/examples/data/car_and_tech_companies.txt @@ -34,4 +34,4 @@ What began as an online bookstore has grown into one of the largest e-commerce p Meta, originally known as Facebook, revolutionized social media by connecting billions of people worldwide. Beyond its core social networking service, Meta is investing in the next generation of digital experiences through virtual and augmented reality technologies, with projects like Oculus. The company's efforts signal a commitment to evolving digital interaction and building the metaverse—a shared virtual space where users can connect and collaborate. Each of these companies has significantly impacted the technology landscape, driving innovation and transforming everyday life through their groundbreaking products and services. -""" \ No newline at end of file +""" diff --git a/examples/database_examples/neptune_analytics_example.py b/examples/database_examples/neptune_analytics_example.py index d98d1768c..1c6eb791f 100644 --- a/examples/database_examples/neptune_analytics_example.py +++ b/examples/database_examples/neptune_analytics_example.py @@ -63,10 +63,10 @@ async def main(): traversals. """ - sample_text_2 = """Neptune Analytics is an ideal choice for investigatory, exploratory, or data-science workloads - that require fast iteration for data, analytical and algorithmic processing, or vector search on graph data. It - complements Amazon Neptune Database, a popular managed graph database. To perform intensive analysis, you can load - the data from a Neptune Database graph or snapshot into Neptune Analytics. You can also load graph data that's + sample_text_2 = """Neptune Analytics is an ideal choice for investigatory, exploratory, or data-science workloads + that require fast iteration for data, analytical and algorithmic processing, or vector search on graph data. It + complements Amazon Neptune Database, a popular managed graph database. To perform intensive analysis, you can load + the data from a Neptune Database graph or snapshot into Neptune Analytics. You can also load graph data that's stored in Amazon S3. """ diff --git a/examples/low_level/product_recommendation.py b/examples/low_level/product_recommendation.py index 782311618..142625318 100644 --- a/examples/low_level/product_recommendation.py +++ b/examples/low_level/product_recommendation.py @@ -165,8 +165,8 @@ async def main(): // If a stored preference exists and it does not match the new value, // raise an error using APOC's utility procedure. CALL apoc.util.validate( - preference IS NOT NULL AND preference.value <> new_size, - "Conflicting shoe size preference: existing size is " + preference.value + " and new size is " + new_size, + preference IS NOT NULL AND preference.value <> new_size, + "Conflicting shoe size preference: existing size is " + preference.value + " and new size is " + new_size, [] ) diff --git a/examples/python/temporal_example.py b/examples/python/temporal_example.py index f5e7d4a9a..a647f31be 100644 --- a/examples/python/temporal_example.py +++ b/examples/python/temporal_example.py @@ -35,16 +35,16 @@ biography_1 = """ biography_2 = """ Arnulf Øverland Ole Peter Arnulf Øverland ( 27 April 1889 – 25 March 1968 ) was a Norwegian poet and artist . He is principally known for his poetry which served to inspire the Norwegian resistance movement during the German occupation of Norway during World War II . - + Biography . Øverland was born in Kristiansund and raised in Bergen . His parents were Peter Anton Øverland ( 1852–1906 ) and Hanna Hage ( 1854–1939 ) . The early death of his father , left the family economically stressed . He was able to attend Bergen Cathedral School and in 1904 Kristiania Cathedral School . He graduated in 1907 and for a time studied philology at University of Kristiania . Øverland published his first collection of poems ( 1911 ) . - + Øverland became a communist sympathizer from the early 1920s and became a member of Mot Dag . He also served as chairman of the Norwegian Students Society 1923–28 . He changed his stand in 1937 , partly as an expression of dissent against the ongoing Moscow Trials . He was an avid opponent of Nazism and in 1936 he wrote the poem Du må ikke sove which was printed in the journal Samtiden . It ends with . ( I thought: : Something is imminent . Our era is over – Europe’s on fire! ) . Probably the most famous line of the poem is ( You mustnt endure so well the injustice that doesnt affect you yourself! ) - + During the German occupation of Norway from 1940 in World War II , he wrote to inspire the Norwegian resistance movement . He wrote a series of poems which were clandestinely distributed , leading to the arrest of both him and his future wife Margrete Aamot Øverland in 1941 . Arnulf Øverland was held first in the prison camp of Grini before being transferred to Sachsenhausen concentration camp in Germany . He spent a four-year imprisonment until the liberation of Norway in 1945 . His poems were later collected in Vi overlever alt and published in 1945 . - + Øverland played an important role in the Norwegian language struggle in the post-war era . He became a noted supporter for the conservative written form of Norwegian called Riksmål , he was president of Riksmålsforbundet ( an organization in support of Riksmål ) from 1947 to 1956 . In addition , Øverland adhered to the traditionalist style of writing , criticising modernist poetry on several occasions . His speech Tungetale fra parnasset , published in Arbeiderbladet in 1954 , initiated the so-called Glossolalia debate . - + Personal life . In 1918 he had married the singer Hildur Arntzen ( 1888–1957 ) . Their marriage was dissolved in 1939 . In 1940 , he married Bartholine Eufemia Leganger ( 1903–1995 ) . They separated shortly after , and were officially divorced in 1945 . Øverland was married to journalist Margrete Aamot Øverland ( 1913–1978 ) during June 1945 . In 1946 , the Norwegian Parliament arranged for Arnulf and Margrete Aamot Øverland to reside at the Grotten . He lived there until his death in 1968 and she lived there for another ten years until her death in 1978 . Arnulf Øverland was buried at Vår Frelsers Gravlund in Oslo . Joseph Grimeland designed the bust of Arnulf Øverland ( bronze , 1970 ) at his grave site . @@ -56,7 +56,7 @@ biography_2 = """ - Vi overlever alt ( 1945 ) - Sverdet bak døren ( 1956 ) - Livets minutter ( 1965 ) - + Awards . - Gyldendals Endowment ( 1935 ) - Dobloug Prize ( 1951 ) diff --git a/examples/python/weighted_graph_visualization.html b/examples/python/weighted_graph_visualization.html index 89920a780..3866d8cd6 100644 --- a/examples/python/weighted_graph_visualization.html +++ b/examples/python/weighted_graph_visualization.html @@ -14,7 +14,7 @@ .nodes circle { stroke: white; stroke-width: 0.5px; filter: drop-shadow(0 0 5px rgba(255,255,255,0.3)); } .node-label { font-size: 5px; font-weight: bold; fill: white; text-anchor: middle; dominant-baseline: middle; font-family: 'Inter', sans-serif; pointer-events: none; } .edge-label { font-size: 3px; fill: rgba(255, 255, 255, 0.7); text-anchor: middle; dominant-baseline: middle; font-family: 'Inter', sans-serif; pointer-events: none; } - + .tooltip { position: absolute; text-align: left; @@ -76,7 +76,7 @@ // Create tooltip content for edge var content = "Edge Information
"; content += "Relationship: " + d.relation + "
"; - + // Show all weights if (d.all_weights && Object.keys(d.all_weights).length > 0) { content += "Weights:
"; @@ -86,23 +86,23 @@ } else if (d.weight !== null && d.weight !== undefined) { content += "Weight: " + d.weight + "
"; } - + if (d.relationship_type) { content += "Type: " + d.relationship_type + "
"; } - + // Add other edge properties if (d.edge_info) { Object.keys(d.edge_info).forEach(function(key) { - if (key !== 'weight' && key !== 'weights' && key !== 'relationship_type' && - key !== 'source_node_id' && key !== 'target_node_id' && - key !== 'relationship_name' && key !== 'updated_at' && + if (key !== 'weight' && key !== 'weights' && key !== 'relationship_type' && + key !== 'source_node_id' && key !== 'target_node_id' && + key !== 'relationship_name' && key !== 'updated_at' && !key.startsWith('weight_')) { content += key + ": " + d.edge_info[key] + "
"; } }); } - + tooltip.html(content) .style("left", (d3.event.pageX + 10) + "px") .style("top", (d3.event.pageY - 10) + "px") @@ -209,4 +209,3 @@ - \ No newline at end of file diff --git a/mise.toml b/mise.toml new file mode 100644 index 000000000..c8ddcd4b3 --- /dev/null +++ b/mise.toml @@ -0,0 +1,2 @@ +[tools] +python = "latest" diff --git a/mypy.ini b/mypy.ini index ba3dd40a4..cd0c68752 100644 --- a/mypy.ini +++ b/mypy.ini @@ -118,4 +118,4 @@ ignore_missing_imports = True ignore_missing_imports = True [mypy-pytz.*] -ignore_missing_imports = True \ No newline at end of file +ignore_missing_imports = True diff --git a/new-examples/configurations/database_examples/neptune_analytics_aws_database_configuration.py b/new-examples/configurations/database_examples/neptune_analytics_aws_database_configuration.py index d98d1768c..1c6eb791f 100644 --- a/new-examples/configurations/database_examples/neptune_analytics_aws_database_configuration.py +++ b/new-examples/configurations/database_examples/neptune_analytics_aws_database_configuration.py @@ -63,10 +63,10 @@ async def main(): traversals. """ - sample_text_2 = """Neptune Analytics is an ideal choice for investigatory, exploratory, or data-science workloads - that require fast iteration for data, analytical and algorithmic processing, or vector search on graph data. It - complements Amazon Neptune Database, a popular managed graph database. To perform intensive analysis, you can load - the data from a Neptune Database graph or snapshot into Neptune Analytics. You can also load graph data that's + sample_text_2 = """Neptune Analytics is an ideal choice for investigatory, exploratory, or data-science workloads + that require fast iteration for data, analytical and algorithmic processing, or vector search on graph data. It + complements Amazon Neptune Database, a popular managed graph database. To perform intensive analysis, you can load + the data from a Neptune Database graph or snapshot into Neptune Analytics. You can also load graph data that's stored in Amazon S3. """ diff --git a/new-examples/custom_pipelines/organizational_hierarchy/data/companies.json b/new-examples/custom_pipelines/organizational_hierarchy/data/companies.json index eb2f65089..c402ec802 100644 --- a/new-examples/custom_pipelines/organizational_hierarchy/data/companies.json +++ b/new-examples/custom_pipelines/organizational_hierarchy/data/companies.json @@ -36,4 +36,3 @@ ] } ] - diff --git a/new-examples/custom_pipelines/organizational_hierarchy/data/people.json b/new-examples/custom_pipelines/organizational_hierarchy/data/people.json index 73835e2ff..3474d8794 100644 --- a/new-examples/custom_pipelines/organizational_hierarchy/data/people.json +++ b/new-examples/custom_pipelines/organizational_hierarchy/data/people.json @@ -50,4 +50,3 @@ "department": "HR" } ] - diff --git a/new-examples/custom_pipelines/product_recommendation/data/customers.json b/new-examples/custom_pipelines/product_recommendation/data/customers.json index 61b89b9d0..fa83f011d 100644 --- a/new-examples/custom_pipelines/product_recommendation/data/customers.json +++ b/new-examples/custom_pipelines/product_recommendation/data/customers.json @@ -106,4 +106,3 @@ "action": "purchased" }] }] - diff --git a/new-examples/custom_pipelines/product_recommendation/product_recommendation_example.py b/new-examples/custom_pipelines/product_recommendation/product_recommendation_example.py index 16adbbf3a..33623b052 100644 --- a/new-examples/custom_pipelines/product_recommendation/product_recommendation_example.py +++ b/new-examples/custom_pipelines/product_recommendation/product_recommendation_example.py @@ -165,8 +165,8 @@ async def main(): // If a stored preference exists and it does not match the new value, // raise an error using APOC's utility procedure. CALL apoc.util.validate( - preference IS NOT NULL AND preference.value <> new_size, - "Conflicting shoe size preference: existing size is " + preference.value + " and new size is " + new_size, + preference IS NOT NULL AND preference.value <> new_size, + "Conflicting shoe size preference: existing size is " + preference.value + " and new size is " + new_size, [] ) diff --git a/new-examples/demos/temporal_awareness_example.py b/new-examples/demos/temporal_awareness_example.py index f5e7d4a9a..a647f31be 100644 --- a/new-examples/demos/temporal_awareness_example.py +++ b/new-examples/demos/temporal_awareness_example.py @@ -35,16 +35,16 @@ biography_1 = """ biography_2 = """ Arnulf Øverland Ole Peter Arnulf Øverland ( 27 April 1889 – 25 March 1968 ) was a Norwegian poet and artist . He is principally known for his poetry which served to inspire the Norwegian resistance movement during the German occupation of Norway during World War II . - + Biography . Øverland was born in Kristiansund and raised in Bergen . His parents were Peter Anton Øverland ( 1852–1906 ) and Hanna Hage ( 1854–1939 ) . The early death of his father , left the family economically stressed . He was able to attend Bergen Cathedral School and in 1904 Kristiania Cathedral School . He graduated in 1907 and for a time studied philology at University of Kristiania . Øverland published his first collection of poems ( 1911 ) . - + Øverland became a communist sympathizer from the early 1920s and became a member of Mot Dag . He also served as chairman of the Norwegian Students Society 1923–28 . He changed his stand in 1937 , partly as an expression of dissent against the ongoing Moscow Trials . He was an avid opponent of Nazism and in 1936 he wrote the poem Du må ikke sove which was printed in the journal Samtiden . It ends with . ( I thought: : Something is imminent . Our era is over – Europe’s on fire! ) . Probably the most famous line of the poem is ( You mustnt endure so well the injustice that doesnt affect you yourself! ) - + During the German occupation of Norway from 1940 in World War II , he wrote to inspire the Norwegian resistance movement . He wrote a series of poems which were clandestinely distributed , leading to the arrest of both him and his future wife Margrete Aamot Øverland in 1941 . Arnulf Øverland was held first in the prison camp of Grini before being transferred to Sachsenhausen concentration camp in Germany . He spent a four-year imprisonment until the liberation of Norway in 1945 . His poems were later collected in Vi overlever alt and published in 1945 . - + Øverland played an important role in the Norwegian language struggle in the post-war era . He became a noted supporter for the conservative written form of Norwegian called Riksmål , he was president of Riksmålsforbundet ( an organization in support of Riksmål ) from 1947 to 1956 . In addition , Øverland adhered to the traditionalist style of writing , criticising modernist poetry on several occasions . His speech Tungetale fra parnasset , published in Arbeiderbladet in 1954 , initiated the so-called Glossolalia debate . - + Personal life . In 1918 he had married the singer Hildur Arntzen ( 1888–1957 ) . Their marriage was dissolved in 1939 . In 1940 , he married Bartholine Eufemia Leganger ( 1903–1995 ) . They separated shortly after , and were officially divorced in 1945 . Øverland was married to journalist Margrete Aamot Øverland ( 1913–1978 ) during June 1945 . In 1946 , the Norwegian Parliament arranged for Arnulf and Margrete Aamot Øverland to reside at the Grotten . He lived there until his death in 1968 and she lived there for another ten years until her death in 1978 . Arnulf Øverland was buried at Vår Frelsers Gravlund in Oslo . Joseph Grimeland designed the bust of Arnulf Øverland ( bronze , 1970 ) at his grave site . @@ -56,7 +56,7 @@ biography_2 = """ - Vi overlever alt ( 1945 ) - Sverdet bak døren ( 1956 ) - Livets minutter ( 1965 ) - + Awards . - Gyldendals Endowment ( 1935 ) - Dobloug Prize ( 1951 ) diff --git a/tools/check-package.sh b/tools/check-package.sh index 237ecf2d0..ca3fc1c13 100644 --- a/tools/check-package.sh +++ b/tools/check-package.sh @@ -58,4 +58,3 @@ fi # error in package exit 1 - diff --git a/tools/poetry-deps.sh b/tools/poetry-deps.sh index 17767b3eb..79b0b77d4 100644 --- a/tools/poetry-deps.sh +++ b/tools/poetry-deps.sh @@ -26,4 +26,4 @@ if [ -z $error ]; then fi # error in package -exit 1 \ No newline at end of file +exit 1 From 962ddf4257b74190fdcfa59f6f72988066d61813 Mon Sep 17 00:00:00 2001 From: Pavel Zorin Date: Thu, 8 Jan 2026 16:11:22 +0100 Subject: [PATCH 17/29] Chore: pre-commit, pre-commit action, contribution guide update --- cognee/api/.env.example => .env.example | 4 ++++ .github/pull_request_template.md | 2 +- .github/workflows/pre_test.yml | 11 ++++++++--- .gitignore | 1 + CONTRIBUTING.md | 19 +++++++++++++------ 5 files changed, 27 insertions(+), 10 deletions(-) rename cognee/api/.env.example => .env.example (75%) diff --git a/cognee/api/.env.example b/.env.example similarity index 75% rename from cognee/api/.env.example rename to .env.example index ad08f6e4e..8a1f9830d 100644 --- a/cognee/api/.env.example +++ b/.env.example @@ -3,3 +3,7 @@ # CORS_ALLOWED_ORIGINS="https://yourdomain.com,https://another.com" # For local development, you might use: # CORS_ALLOWED_ORIGINS="http://localhost:3000" + +LLM_API_KEY="your-openai-api-key" +LLM_MODEL="openai/gpt-4o-mini" +LLM_PROVIDER="openai" diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md index be9d219c1..4bd15a4ad 100644 --- a/.github/pull_request_template.md +++ b/.github/pull_request_template.md @@ -29,7 +29,7 @@ DO NOT use AI-generated descriptions. We want to understand your thought process ## Pre-submission Checklist -- [ ] **I have tested my changes thoroughly before submitting this PR** +- [ ] **I have tested my changes thoroughly before submitting this PR** (See `CONTRIBUTING.md`) - [ ] **This PR contains minimal changes necessary to address the issue/feature** - [ ] My code follows the project's coding standards and style guidelines - [ ] I have added tests that prove my fix is effective or that my feature works diff --git a/.github/workflows/pre_test.yml b/.github/workflows/pre_test.yml index 115313eac..aa4a26347 100644 --- a/.github/workflows/pre_test.yml +++ b/.github/workflows/pre_test.yml @@ -13,10 +13,15 @@ jobs: with: fetch-depth: 0 - - name: Install uv - uses: astral-sh/setup-uv@v4 + - name: Cognee Setup + uses: ./.github/actions/cognee_setup with: - enable-cache: true + python-version: '3.11.x' - name: Validate uv lockfile and project metadata run: uv lock --check || { echo "'uv lock --check' failed."; echo "Run 'uv lock' and push your changes."; exit 1; } + + - name: Run pre-commit hooks + run: | + uv run pip install pre-commit + pre-commit run diff --git a/.gitignore b/.gitignore index ff42efc97..3d7d33d3c 100644 --- a/.gitignore +++ b/.gitignore @@ -147,6 +147,7 @@ venv/ ENV/ env.bak/ venv.bak/ +mise.toml # Spyder project settings .spyderproject diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 2e8ed4aa9..3a810733b 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -62,6 +62,11 @@ Looking for a place to start? Try filtering for [good first issues](https://gith ## 2. 🛠️ Development Setup +### Required tools +* [Python](https://www.python.org/downloads/) +* [uv](https://docs.astral.sh/uv/getting-started/installation/) +* pre-commit: `uv run pip install pre-commit && pre-commit install` + ### Fork and Clone 1. Fork the [**cognee**](https://github.com/topoteretes/cognee) repository @@ -93,29 +98,31 @@ git checkout -b feature/your-feature-name 4. **Commits**: Write clear commit messages ### Running Tests + +Rename `.env.example` into `.env` and provide your OPENAI_API_KEY as LLM_API_KEY + ```shell -python cognee/cognee/tests/test_library.py +uv run python cognee/tests/test_library.py ``` ### Running Simple Example -Change .env.example into .env and provide your OPENAI_API_KEY as LLM_API_KEY +Rename `.env.example` into `.env` and provide your OPENAI_API_KEY as LLM_API_KEY Make sure to run ```shell uv sync ``` in the root cloned folder or set up a virtual environment to run cognee ```shell -python cognee/cognee/examples/python/simple_example.py +python examples/python/simple_example.py ``` or ```shell -uv run python cognee/cognee/examples/python/simple_example.py +uv run python examples/python/simple_example.py ``` ## 4. 📤 Submitting Changes -1. Install ruff on your system -2. Run ```ruff format .``` and ``` ruff check ``` and fix the issues +1. Make sure that `pre-commit` and hooks are installed. See `Required tools` section for more information. Try executing `pre-commit run` if you are not sure. 3. Push your changes: ```shell git add . From b0fe1a8439eac842cb6de855c2960faf4ec56c19 Mon Sep 17 00:00:00 2001 From: Pavel Zorin Date: Thu, 8 Jan 2026 16:31:59 +0100 Subject: [PATCH 18/29] CI: Speed up pre-test workflow --- .github/workflows/pre_test.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/pre_test.yml b/.github/workflows/pre_test.yml index aa4a26347..27931ea45 100644 --- a/.github/workflows/pre_test.yml +++ b/.github/workflows/pre_test.yml @@ -13,10 +13,10 @@ jobs: with: fetch-depth: 0 - - name: Cognee Setup - uses: ./.github/actions/cognee_setup + - name: Install uv + uses: astral-sh/setup-uv@v4 with: - python-version: '3.11.x' + enable-cache: true - name: Validate uv lockfile and project metadata run: uv lock --check || { echo "'uv lock --check' failed."; echo "Run 'uv lock' and push your changes."; exit 1; } From 15a88accac056e46d948bb0c4feba73276b66a6d Mon Sep 17 00:00:00 2001 From: Pavel Zorin Date: Thu, 8 Jan 2026 16:51:48 +0100 Subject: [PATCH 19/29] Chore: use pre-commit action --- .github/workflows/pre_test.yml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/.github/workflows/pre_test.yml b/.github/workflows/pre_test.yml index 27931ea45..a36b17f89 100644 --- a/.github/workflows/pre_test.yml +++ b/.github/workflows/pre_test.yml @@ -22,6 +22,4 @@ jobs: run: uv lock --check || { echo "'uv lock --check' failed."; echo "Run 'uv lock' and push your changes."; exit 1; } - name: Run pre-commit hooks - run: | - uv run pip install pre-commit - pre-commit run + uses: pre-commit/action@v3.0.1 From 3e602fdad72f712030ae1ec94d2c2b27599faebe Mon Sep 17 00:00:00 2001 From: Pavel Zorin Date: Thu, 8 Jan 2026 18:40:02 +0100 Subject: [PATCH 20/29] Renamed the pre_test workflow --- .github/workflows/pre_test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pre_test.yml b/.github/workflows/pre_test.yml index a36b17f89..912dc7bc7 100644 --- a/.github/workflows/pre_test.yml +++ 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llama-cpp = ["llama-cpp-python"] llama-index = ["llama-index-core"] mistral = ["mistral-common"] @@ -14514,4 +14542,4 @@ scraping = ["APScheduler", "beautifulsoup4", "lxml", "lxml", "playwright", "prot [metadata] lock-version = "2.1" python-versions = ">=3.10,<3.14" -content-hash = "deb552cfd9e8752ae2513a420ec008d7acda2ddf9a93cde4abb95967451c3d36" +content-hash = "58cae432164caef56438d23e8d96b1d5778cd3c4b1caaffbefe7ec363a15dd19" From aeb2f39fd847efc6ff6a1ad3e400ea7583ee7d4f Mon Sep 17 00:00:00 2001 From: Pavel Zorin Date: Fri, 9 Jan 2026 14:15:36 +0100 Subject: [PATCH 22/29] Chore: Remove Lint and Format check in favor to pre-commit --- .github/workflows/basic_tests.yml | 37 ------------------------------- 1 file changed, 37 deletions(-) diff --git a/.github/workflows/basic_tests.yml b/.github/workflows/basic_tests.yml index 1fc20a148..6d9ddce3a 100644 --- a/.github/workflows/basic_tests.yml +++ b/.github/workflows/basic_tests.yml @@ -34,43 +34,6 @@ env: ENV: 'dev' jobs: - - lint: - name: Run Linting - runs-on: ubuntu-22.04 - steps: - - name: Check out repository - uses: actions/checkout@v4 - with: - fetch-depth: 0 - - - name: Cognee Setup - uses: ./.github/actions/cognee_setup - with: - python-version: ${{ inputs.python-version }} - - - name: Run Linting - uses: astral-sh/ruff-action@v2 - - format-check: - name: Run Formatting Check - runs-on: ubuntu-22.04 - steps: - - name: Check out repository - uses: actions/checkout@v4 - with: - fetch-depth: 0 - - - name: Cognee Setup - uses: ./.github/actions/cognee_setup - with: - python-version: ${{ inputs.python-version }} - - - name: Run Formatting Check - uses: astral-sh/ruff-action@v2 - with: - args: "format --check" - unit-tests: name: Run Unit Tests runs-on: ubuntu-22.04 From fb4796204a92a84436f083b6c93b3ed41a719839 Mon Sep 17 00:00:00 2001 From: Pavel Zorin Date: Fri, 9 Jan 2026 18:06:08 +0100 Subject: [PATCH 23/29] Chore: Fix helm chart --- .gitignore | 1 + deployment/helm/README.md | 18 +++++++++++---- .../helm/templates/cognee_deployment.yaml | 23 +++++++++++++++++++ deployment/helm/templates/cognee_service.yaml | 2 +- deployment/helm/templates/secrets.yml | 7 ++++++ deployment/helm/values.yaml | 6 +++-- 6 files changed, 50 insertions(+), 7 deletions(-) create mode 100644 deployment/helm/templates/secrets.yml diff --git a/.gitignore b/.gitignore index 3d7d33d3c..7c3095d08 100644 --- a/.gitignore +++ b/.gitignore @@ -148,6 +148,7 @@ ENV/ env.bak/ venv.bak/ mise.toml +deployment/helm/values-local.yml # Spyder project settings .spyderproject diff --git a/deployment/helm/README.md b/deployment/helm/README.md index 6ee79cc80..3b496c54b 100644 --- a/deployment/helm/README.md +++ b/deployment/helm/README.md @@ -1,6 +1,7 @@ -# cognee-infra-helm -General infrastructure setup for Cognee on Kubernetes using a Helm chart. +# Example helm chart +Example Helm chart fro Cognee with PostgreSQL and pgvector extension +It is not ready for production usage ## Prerequisites Before deploying the Helm chart, ensure the following prerequisites are met:  @@ -13,13 +14,22 @@ Before deploying the Helm chart, ensure the following prerequisites are met:  Clone the Repository Clone this repository to your local machine and navigate to the directory. -## Deploy Helm Chart: +## Example deploy Helm Chart: ```bash - helm install cognee ./cognee-chart + helm upgrade --install cognee deployment/helm \ + --namespace cognee --create-namespace \ + --set cognee.env.LLM_API_KEY="$YOUR_KEY" ``` **Uninstall Helm Release**: ```bash helm uninstall cognee ``` + +## Port forwarding +To access cognee, run +``` +kubectl port-forward svc/cognee-service -n cognee 8000 +``` +it will be available at localhost:8000 diff --git a/deployment/helm/templates/cognee_deployment.yaml b/deployment/helm/templates/cognee_deployment.yaml index f16a475ec..cf44d7301 100644 --- a/deployment/helm/templates/cognee_deployment.yaml +++ b/deployment/helm/templates/cognee_deployment.yaml @@ -20,12 +20,35 @@ spec: ports: - containerPort: {{ .Values.cognee.port }} env: + - name: ENABLE_BACKEND_ACCESS_CONTROL + value: "false" - name: HOST value: {{ .Values.cognee.env.HOST }} - name: ENVIRONMENT value: {{ .Values.cognee.env.ENVIRONMENT }} - name: PYTHONPATH value: {{ .Values.cognee.env.PYTHONPATH }} + - name: VECTOR_DB_PROVIDER + value: pgvector + - name: DB_HOST + value: {{ .Release.Name }}-postgres + - name: DB_PORT + value: "{{ .Values.postgres.port }}" + - name: DB_NAME + value: {{ .Values.postgres.env.POSTGRES_DB }} + - name: DB_USERNAME + value: {{ .Values.postgres.env.POSTGRES_USER }} + - name: DB_PASSWORD + value: {{ .Values.postgres.env.POSTGRES_PASSWORD }} + - name: LLM_API_KEY + valueFrom: + secretKeyRef: + name: {{ .Release.Name }}-llm-api-key + key: LLM_API_KEY + - name: LLM_MODEL + value: {{ .Values.cognee.env.LLM_MODEL }} + - name: LLM_PROVIDER + value: {{ .Values.cognee.env.LLM_PROVIDER }} resources: limits: cpu: {{ .Values.cognee.resources.cpu }} diff --git a/deployment/helm/templates/cognee_service.yaml b/deployment/helm/templates/cognee_service.yaml index 21e9e470e..b3ecbd5e3 100644 --- a/deployment/helm/templates/cognee_service.yaml +++ b/deployment/helm/templates/cognee_service.yaml @@ -5,7 +5,7 @@ metadata: labels: app: {{ .Release.Name }}-cognee spec: - type: NodePort + type: ClusterIP ports: - port: {{ .Values.cognee.port }} targetPort: {{ .Values.cognee.port }} diff --git a/deployment/helm/templates/secrets.yml b/deployment/helm/templates/secrets.yml new file mode 100644 index 000000000..1088865d2 --- /dev/null +++ b/deployment/helm/templates/secrets.yml @@ -0,0 +1,7 @@ +apiVersion: v1 +kind: Secret +metadata: + name: {{ .Release.Name }}-llm-api-key +type: Opaque +data: + LLM_API_KEY: {{ .Values.cognee.env.LLM_API_KEY | b64enc | quote }} diff --git a/deployment/helm/values.yaml b/deployment/helm/values.yaml index 278312373..4a8fd4622 100644 --- a/deployment/helm/values.yaml +++ b/deployment/helm/values.yaml @@ -7,9 +7,11 @@ cognee: HOST: "0.0.0.0" ENVIRONMENT: "local" PYTHONPATH: "." + LLM_MODEL: "openai/gpt-4o-mini" + LLM_PROVIDER: "openai" resources: cpu: "4.0" - memory: "8Gi" + memory: "2Gi" # Configuration for the 'postgres' database service postgres: @@ -19,4 +21,4 @@ postgres: POSTGRES_USER: "cognee" POSTGRES_PASSWORD: "cognee" POSTGRES_DB: "cognee_db" - storage: "8Gi" + storage: "2Gi" From f73457ef725772670969cdd25ce8878b2af77266 Mon Sep 17 00:00:00 2001 From: HectorSin Date: Sat, 10 Jan 2026 20:24:00 +0900 Subject: [PATCH 24/29] refactor: add type hints for user_id and visualization server args Signed-off-by: HectorSin --- cognee/shared/utils.py | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/cognee/shared/utils.py b/cognee/shared/utils.py index 7c76cfa59..17501a512 100644 --- a/cognee/shared/utils.py +++ b/cognee/shared/utils.py @@ -8,7 +8,8 @@ import http.server import socketserver from threading import Thread import pathlib -from uuid import uuid4, uuid5, NAMESPACE_OID +from typing import Union +from uuid import uuid4, uuid5, NAMESPACE_OID, UUID from cognee.base_config import get_base_config from cognee.shared.logging_utils import get_logger @@ -78,7 +79,7 @@ def _sanitize_nested_properties(obj, property_names: list[str]): return obj -def send_telemetry(event_name: str, user_id, additional_properties: dict = {}): +def send_telemetry(event_name: str, user_id: Union[str, UUID], additional_properties: dict = {}): if os.getenv("TELEMETRY_DISABLED"): return @@ -138,7 +139,9 @@ def embed_logo(p, layout_scale, logo_alpha, position): def start_visualization_server( - host="0.0.0.0", port=8001, handler_class=http.server.SimpleHTTPRequestHandler + host: str = "0.0.0.0", + port: int = 8001, + handler_class=http.server.SimpleHTTPRequestHandler, ): """ Spin up a simple HTTP server in a background thread to serve files. From ebf2aaaa5c4f049bf5e9af893912d7053f175a9c Mon Sep 17 00:00:00 2001 From: HectorSin Date: Sat, 10 Jan 2026 20:58:08 +0900 Subject: [PATCH 25/29] refactor: add type hint for handler_class Signed-off-by: HectorSin --- cognee/shared/utils.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/cognee/shared/utils.py b/cognee/shared/utils.py index 17501a512..460a10bfb 100644 --- a/cognee/shared/utils.py +++ b/cognee/shared/utils.py @@ -141,7 +141,9 @@ def embed_logo(p, layout_scale, logo_alpha, position): def start_visualization_server( host: str = "0.0.0.0", port: int = 8001, - handler_class=http.server.SimpleHTTPRequestHandler, + handler_class: type[ + http.server.SimpleHTTPRequestHandler + ] = http.server.SimpleHTTPRequestHandler, ): """ Spin up a simple HTTP server in a background thread to serve files. From 46c12cc0ee7dda7b379b52f34a3f84f6607b3c6f Mon Sep 17 00:00:00 2001 From: HectorSin Date: Sat, 10 Jan 2026 21:13:10 +0900 Subject: [PATCH 26/29] refactor: resolve remaining ANN001 errors in utils.py Signed-off-by: HectorSin --- cognee/shared/utils.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/cognee/shared/utils.py b/cognee/shared/utils.py index 460a10bfb..7eb036ef1 100644 --- a/cognee/shared/utils.py +++ b/cognee/shared/utils.py @@ -8,7 +8,7 @@ import http.server import socketserver from threading import Thread import pathlib -from typing import Union +from typing import Union, Any, Dict, List from uuid import uuid4, uuid5, NAMESPACE_OID, UUID from cognee.base_config import get_base_config @@ -59,7 +59,7 @@ def get_anonymous_id(): return anonymous_id -def _sanitize_nested_properties(obj, property_names: list[str]): +def _sanitize_nested_properties(obj: Union[Dict, List, Any], property_names: list[str]): """ Recursively replaces any property whose key matches one of `property_names` (e.g., ['url', 'path']) in a nested dict or list with a uuid5 hash @@ -109,7 +109,7 @@ def send_telemetry(event_name: str, user_id: Union[str, UUID], additional_proper print(f"Error sending telemetry through proxy: {response.status_code}") -def embed_logo(p, layout_scale, logo_alpha, position): +def embed_logo(p: Any, layout_scale: float, logo_alpha: float, position: str): """ Embed a logo into the graph visualization as a watermark. """ From da5660b7169c32a744430b06201c282a338dcf76 Mon Sep 17 00:00:00 2001 From: HectorSin Date: Sat, 10 Jan 2026 21:21:04 +0900 Subject: [PATCH 27/29] refactor: fix mutable default argument in send_telemetry Signed-off-by: HectorSin --- cognee/shared/utils.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/cognee/shared/utils.py b/cognee/shared/utils.py index 7eb036ef1..ce9fb2169 100644 --- a/cognee/shared/utils.py +++ b/cognee/shared/utils.py @@ -80,6 +80,8 @@ def _sanitize_nested_properties(obj: Union[Dict, List, Any], property_names: lis def send_telemetry(event_name: str, user_id: Union[str, UUID], additional_properties: dict = {}): + if additional_properties is None: + additional_properties = {} if os.getenv("TELEMETRY_DISABLED"): return From 4189cda89518c779d329b7cd05c9050533b6a40e Mon Sep 17 00:00:00 2001 From: HectorSin Date: Sat, 10 Jan 2026 21:25:25 +0900 Subject: [PATCH 28/29] refactor: simplify type hint and add return type for sanitize function Signed-off-by: HectorSin --- cognee/shared/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cognee/shared/utils.py b/cognee/shared/utils.py index ce9fb2169..3b6e7ba14 100644 --- a/cognee/shared/utils.py +++ b/cognee/shared/utils.py @@ -59,7 +59,7 @@ def get_anonymous_id(): return anonymous_id -def _sanitize_nested_properties(obj: Union[Dict, List, Any], property_names: list[str]): +def _sanitize_nested_properties(obj: Any, property_names: list[str]) -> Any: """ Recursively replaces any property whose key matches one of `property_names` (e.g., ['url', 'path']) in a nested dict or list with a uuid5 hash From ab990f7c5c2c21a02f85f0c383ae6f157b72bfe9 Mon Sep 17 00:00:00 2001 From: vasilije Date: Sun, 11 Jan 2026 16:04:11 +0100 Subject: [PATCH 29/29] docs: add CLAUDE.md for Claude Code guidance MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Add comprehensive CLAUDE.md file to guide future Claude Code instances working in this repository. Includes: - Development commands (setup, testing, code quality) - Architecture overview (ECL pipeline, data flows, key patterns) - Complete configuration guide (LLM providers, databases, storage) - All 15 search types with descriptions - Extension points for custom functionality - Troubleshooting common issues 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 --- CLAUDE.md | 588 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 588 insertions(+) create mode 100644 CLAUDE.md diff --git a/CLAUDE.md b/CLAUDE.md new file mode 100644 index 000000000..7ac4f01d0 --- /dev/null +++ b/CLAUDE.md @@ -0,0 +1,588 @@ +# CLAUDE.md + +This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository. + +## Project Overview + +Cognee is an open-source AI memory platform that transforms raw data into persistent knowledge graphs for AI agents. It replaces traditional RAG (Retrieval-Augmented Generation) with an ECL (Extract, Cognify, Load) pipeline combining vector search, graph databases, and LLM-powered entity extraction. + +**Requirements**: Python 3.9 - 3.12 + +## Development Commands + +### Setup +```bash +# Create virtual environment (recommended: uv) +uv venv && source .venv/bin/activate + +# Install with pip, poetry, or uv +uv pip install -e . + +# Install with dev dependencies +uv pip install -e ".[dev]" + +# Install with specific extras +uv pip install -e ".[postgres,neo4j,docs,chromadb]" + +# Set up pre-commit hooks +pre-commit install +``` + +### Available Installation Extras +- **postgres** / **postgres-binary** - PostgreSQL + PGVector support +- **neo4j** - Neo4j graph database support +- **neptune** - AWS Neptune support +- **chromadb** - ChromaDB vector database +- **docs** - Document processing (unstructured library) +- **scraping** - Web scraping (Tavily, BeautifulSoup, Playwright) +- **langchain** - LangChain integration +- **llama-index** - LlamaIndex integration +- **anthropic** - Anthropic Claude models +- **gemini** - Google Gemini models +- **ollama** - Ollama local models +- **mistral** - Mistral AI models +- **groq** - Groq API support +- **llama-cpp** - Llama.cpp local inference +- **huggingface** - HuggingFace transformers +- **aws** - S3 storage backend +- **redis** - Redis caching +- **graphiti** - Graphiti-core integration +- **baml** - BAML structured output +- **dlt** - Data load tool (dlt) integration +- **docling** - Docling document processing +- **codegraph** - Code graph extraction +- **evals** - Evaluation tools +- **deepeval** - DeepEval testing framework +- **posthog** - PostHog analytics +- **monitoring** - Sentry + Langfuse observability +- **distributed** - Modal distributed execution +- **dev** - All development tools (pytest, mypy, ruff, etc.) +- **debug** - Debugpy for debugging + +### Testing +```bash +# Run all tests +pytest + +# Run with coverage +pytest --cov=cognee --cov-report=html + +# Run specific test file +pytest cognee/tests/test_custom_model.py + +# Run specific test function +pytest cognee/tests/test_custom_model.py::test_function_name + +# Run async tests +pytest -v cognee/tests/integration/ + +# Run unit tests only +pytest cognee/tests/unit/ + +# Run integration tests only +pytest cognee/tests/integration/ +``` + +### Code Quality +```bash +# Run ruff linter +ruff check . + +# Run ruff formatter +ruff format . + +# Run both linting and formatting (pre-commit) +pre-commit run --all-files + +# Type checking with mypy +mypy cognee/ + +# Run pylint +pylint cognee/ +``` + +### Running Cognee +```bash +# Using Python SDK +python examples/python/simple_example.py + +# Using CLI +cognee-cli add "Your text here" +cognee-cli cognify +cognee-cli search "Your query" +cognee-cli delete --all + +# Launch full stack with UI +cognee-cli -ui +``` + +## Architecture Overview + +### Core Workflow: add → cognify → search/memify + +1. **add()** - Ingest data (files, URLs, text) into datasets +2. **cognify()** - Extract entities/relationships and build knowledge graph +3. **search()** - Query knowledge using various retrieval strategies +4. **memify()** - Enrich graph with additional context and rules + +### Key Architectural Patterns + +#### 1. Pipeline-Based Processing +All data flows through task-based pipelines (`cognee/modules/pipelines/`). Tasks are composable units that can run sequentially or in parallel. Example pipeline tasks: `classify_documents`, `extract_graph_from_data`, `add_data_points`. + +#### 2. Interface-Based Database Adapters +Multiple backends are supported through adapter interfaces: +- **Graph**: Kuzu (default), Neo4j, Neptune via `GraphDBInterface` +- **Vector**: LanceDB (default), ChromaDB, PGVector via `VectorDBInterface` +- **Relational**: SQLite (default), PostgreSQL + +Key files: +- `cognee/infrastructure/databases/graph/graph_db_interface.py` +- `cognee/infrastructure/databases/vector/vector_db_interface.py` + +#### 3. Multi-Tenant Access Control +User → Dataset → Data hierarchy with permission-based filtering. Enable with `ENABLE_BACKEND_ACCESS_CONTROL=True`. Each user+dataset combination can have isolated graph/vector databases (when using supported backends: Kuzu, LanceDB, SQLite, Postgres). + +### Layer Structure + +``` +API Layer (cognee/api/v1/) + ↓ +Main Functions (add, cognify, search, memify) + ↓ +Pipeline Orchestrator (cognee/modules/pipelines/) + ↓ +Task Execution Layer (cognee/tasks/) + ↓ +Domain Modules (graph, retrieval, ingestion, etc.) + ↓ +Infrastructure Adapters (LLM, databases) + ↓ +External Services (OpenAI, Kuzu, LanceDB, etc.) +``` + +### Critical Data Flow Paths + +#### ADD: Data Ingestion +`add()` → `resolve_data_directories` → `ingest_data` → `save_data_item_to_storage` → Create Dataset + Data records in relational DB + +Key files: `cognee/api/v1/add/add.py`, `cognee/tasks/ingestion/ingest_data.py` + +#### COGNIFY: Knowledge Graph Construction +`cognify()` → `classify_documents` → `extract_chunks_from_documents` → `extract_graph_from_data` (LLM extracts entities/relationships using Instructor) → `summarize_text` → `add_data_points` (store in graph + vector DBs) + +Key files: +- `cognee/api/v1/cognify/cognify.py` +- `cognee/tasks/graph/extract_graph_from_data.py` +- `cognee/tasks/storage/add_data_points.py` + +#### SEARCH: Retrieval +`search(query_text, query_type)` → route to retriever type → filter by permissions → return results + +Available search types (from `cognee/modules/search/types/SearchType.py`): +- **GRAPH_COMPLETION** (default) - Graph traversal + LLM completion +- **GRAPH_SUMMARY_COMPLETION** - Uses pre-computed summaries with graph context +- **GRAPH_COMPLETION_COT** - Chain-of-thought reasoning over graph +- **GRAPH_COMPLETION_CONTEXT_EXTENSION** - Extended context graph retrieval +- **TRIPLET_COMPLETION** - Triplet-based (subject-predicate-object) search +- **RAG_COMPLETION** - Traditional RAG with chunks +- **CHUNKS** - Vector similarity search over chunks +- **CHUNKS_LEXICAL** - Lexical (keyword) search over chunks +- **SUMMARIES** - Search pre-computed document summaries +- **CYPHER** - Direct Cypher query execution (requires `ALLOW_CYPHER_QUERY=True`) +- **NATURAL_LANGUAGE** - Natural language to structured query +- **TEMPORAL** - Time-aware graph search +- **FEELING_LUCKY** - Automatic search type selection +- **FEEDBACK** - User feedback-based refinement +- **CODING_RULES** - Code-specific search rules + +Key files: +- `cognee/api/v1/search/search.py` +- `cognee/modules/retrieval/context_providers/TripletSearchContextProvider.py` +- `cognee/modules/search/types/SearchType.py` + +### Core Data Models + +#### Engine Models (`cognee/infrastructure/engine/models/`) +- **DataPoint** - Base class for all graph nodes (versioned, with metadata) +- **Edge** - Graph relationships (source, target, relationship type) +- **Triplet** - (Subject, Predicate, Object) representation + +#### Graph Models (`cognee/shared/data_models.py`) +- **KnowledgeGraph** - Container for nodes and edges +- **Node** - Entity (id, name, type, description) +- **Edge** - Relationship (source_node_id, target_node_id, relationship_name) + +### Key Infrastructure Components + +#### LLM Gateway (`cognee/infrastructure/llm/LLMGateway.py`) +Unified interface for multiple LLM providers: OpenAI, Anthropic, Gemini, Ollama, Mistral, Bedrock. Uses Instructor for structured output extraction. + +#### Embedding Engines +Factory pattern for embeddings: `cognee/infrastructure/databases/vector/embeddings/get_embedding_engine.py` + +#### Document Loaders +Support for PDF, DOCX, CSV, images, audio, code files in `cognee/infrastructure/files/` + +## Important Configuration + +### Environment Setup +Copy `.env.template` to `.env` and configure: + +```bash +# Minimal setup (defaults to OpenAI + local file-based databases) +LLM_API_KEY="your_openai_api_key" +LLM_MODEL="openai/gpt-4o-mini" # Default model +``` + +**Important**: If you configure only LLM or only embeddings, the other defaults to OpenAI. Ensure you have a working OpenAI API key, or configure both to avoid unexpected defaults. + +Default databases (no extra setup needed): +- **Relational**: SQLite (metadata and state storage) +- **Vector**: LanceDB (embeddings for semantic search) +- **Graph**: Kuzu (knowledge graph and relationships) + +All stored in `.venv` by default. Override with `DATA_ROOT_DIRECTORY` and `SYSTEM_ROOT_DIRECTORY`. + +### Switching Databases + +#### Relational Databases +```bash +# PostgreSQL (requires postgres extra: pip install cognee[postgres]) +DB_PROVIDER=postgres +DB_HOST=localhost +DB_PORT=5432 +DB_USERNAME=cognee +DB_PASSWORD=cognee +DB_NAME=cognee_db +``` + +#### Vector Databases +Supported: lancedb (default), pgvector, chromadb, qdrant, weaviate, milvus +```bash +# ChromaDB (requires chromadb extra) +VECTOR_DB_PROVIDER=chromadb + +# PGVector (requires postgres extra) +VECTOR_DB_PROVIDER=pgvector +VECTOR_DB_URL=postgresql://cognee:cognee@localhost:5432/cognee_db +``` + +#### Graph Databases +Supported: kuzu (default), neo4j, neptune, kuzu-remote +```bash +# Neo4j (requires neo4j extra: pip install cognee[neo4j]) +GRAPH_DATABASE_PROVIDER=neo4j +GRAPH_DATABASE_URL=bolt://localhost:7687 +GRAPH_DATABASE_NAME=neo4j +GRAPH_DATABASE_USERNAME=neo4j +GRAPH_DATABASE_PASSWORD=yourpassword + +# Remote Kuzu +GRAPH_DATABASE_PROVIDER=kuzu-remote +GRAPH_DATABASE_URL=http://localhost:8000 +GRAPH_DATABASE_USERNAME=your_username +GRAPH_DATABASE_PASSWORD=your_password +``` + +### LLM Provider Configuration + +Supported providers: OpenAI (default), Azure OpenAI, Google Gemini, Anthropic, AWS Bedrock, Ollama, LM Studio, Custom (OpenAI-compatible APIs) + +#### OpenAI (Recommended - Minimal Setup) +```bash +LLM_API_KEY="your_openai_api_key" +LLM_MODEL="openai/gpt-4o-mini" # or gpt-4o, gpt-4-turbo, etc. +LLM_PROVIDER="openai" +``` + +#### Azure OpenAI +```bash +LLM_PROVIDER="azure" +LLM_MODEL="azure/gpt-4o-mini" +LLM_ENDPOINT="https://YOUR-RESOURCE.openai.azure.com/openai/deployments/gpt-4o-mini" +LLM_API_KEY="your_azure_api_key" +LLM_API_VERSION="2024-12-01-preview" +``` + +#### Google Gemini (requires gemini extra) +```bash +LLM_PROVIDER="gemini" +LLM_MODEL="gemini/gemini-2.0-flash-exp" +LLM_API_KEY="your_gemini_api_key" +``` + +#### Anthropic Claude (requires anthropic extra) +```bash +LLM_PROVIDER="anthropic" +LLM_MODEL="claude-3-5-sonnet-20241022" +LLM_API_KEY="your_anthropic_api_key" +``` + +#### Ollama (Local - requires ollama extra) +```bash +LLM_PROVIDER="ollama" +LLM_MODEL="llama3.1:8b" +LLM_ENDPOINT="http://localhost:11434/v1" +LLM_API_KEY="ollama" +EMBEDDING_PROVIDER="ollama" +EMBEDDING_MODEL="nomic-embed-text:latest" +EMBEDDING_ENDPOINT="http://localhost:11434/api/embed" +HUGGINGFACE_TOKENIZER="nomic-ai/nomic-embed-text-v1.5" +``` + +#### Custom / OpenRouter / vLLM +```bash +LLM_PROVIDER="custom" +LLM_MODEL="openrouter/google/gemini-2.0-flash-lite-preview-02-05:free" +LLM_ENDPOINT="https://openrouter.ai/api/v1" +LLM_API_KEY="your_api_key" +``` + +#### AWS Bedrock (requires aws extra) +```bash +LLM_PROVIDER="bedrock" +LLM_MODEL="anthropic.claude-3-sonnet-20240229-v1:0" +AWS_REGION="us-east-1" +AWS_ACCESS_KEY_ID="your_access_key" +AWS_SECRET_ACCESS_KEY="your_secret_key" +# Optional for temporary credentials: +# AWS_SESSION_TOKEN="your_session_token" +``` + +#### LLM Rate Limiting +```bash +LLM_RATE_LIMIT_ENABLED=true +LLM_RATE_LIMIT_REQUESTS=60 # Requests per interval +LLM_RATE_LIMIT_INTERVAL=60 # Interval in seconds +``` + +#### Instructor Mode (Structured Output) +```bash +# LLM_INSTRUCTOR_MODE controls how structured data is extracted +# Each LLM has its own default (e.g., gpt-4o models use "json_schema_mode") +# Override if needed: +LLM_INSTRUCTOR_MODE="json_schema_mode" # or "tool_call", "md_json", etc. +``` + +### Structured Output Framework +```bash +# Use Instructor (default, via litellm) +STRUCTURED_OUTPUT_FRAMEWORK="instructor" + +# Or use BAML (requires baml extra: pip install cognee[baml]) +STRUCTURED_OUTPUT_FRAMEWORK="baml" +BAML_LLM_PROVIDER=openai +BAML_LLM_MODEL="gpt-4o-mini" +BAML_LLM_API_KEY="your_api_key" +``` + +### Storage Backend +```bash +# Local filesystem (default) +STORAGE_BACKEND="local" + +# S3 (requires aws extra: pip install cognee[aws]) +STORAGE_BACKEND="s3" +STORAGE_BUCKET_NAME="your-bucket-name" +AWS_REGION="us-east-1" +AWS_ACCESS_KEY_ID="your_access_key" +AWS_SECRET_ACCESS_KEY="your_secret_key" +DATA_ROOT_DIRECTORY="s3://your-bucket/cognee/data" +SYSTEM_ROOT_DIRECTORY="s3://your-bucket/cognee/system" +``` + +## Extension Points + +### Adding New Functionality + +1. **New Task Type**: Create task function in `cognee/tasks/`, return Task object, register in pipeline +2. **New Database Backend**: Implement `GraphDBInterface` or `VectorDBInterface` in `cognee/infrastructure/databases/` +3. **New LLM Provider**: Add configuration in LLM config (uses litellm) +4. **New Document Processor**: Extend loaders in `cognee/modules/data/processing/` +5. **New Search Type**: Add to `SearchType` enum and implement retriever in `cognee/modules/retrieval/` +6. **Custom Graph Models**: Define Pydantic models extending `DataPoint` in your code + +### Working with Ontologies +Cognee supports ontology-based entity extraction to ground knowledge graphs in standardized semantic frameworks (e.g., OWL ontologies). + +Configuration: +```bash +ONTOLOGY_RESOLVER=rdflib # Default: uses rdflib and OWL files +MATCHING_STRATEGY=fuzzy # Default: fuzzy matching with 80% similarity +ONTOLOGY_FILE_PATH=/path/to/your/ontology.owl # Full path to ontology file +``` + +Implementation: `cognee/modules/ontology/` + +## Branching Strategy + +**IMPORTANT**: Always branch from `dev`, not `main`. The `dev` branch is the active development branch. + +```bash +git checkout dev +git pull origin dev +git checkout -b feature/your-feature-name +``` + +## Code Style + +- Ruff for linting and formatting (configured in `pyproject.toml`) +- Line length: 100 characters +- Pre-commit hooks run ruff automatically +- Type hints encouraged (mypy checks enabled) + +## Testing Strategy + +Tests are organized in `cognee/tests/`: +- `unit/` - Unit tests for individual modules +- `integration/` - Full pipeline integration tests +- `cli_tests/` - CLI command tests +- `tasks/` - Task-specific tests + +When adding features, add corresponding tests. Integration tests should cover the full add → cognify → search flow. + +## API Structure + +FastAPI application with versioned routes under `cognee/api/v1/`: +- `/add` - Data ingestion +- `/cognify` - Knowledge graph processing +- `/search` - Query interface +- `/memify` - Graph enrichment +- `/datasets` - Dataset management +- `/users` - Authentication (if `REQUIRE_AUTHENTICATION=True`) +- `/visualize` - Graph visualization server + +## Python SDK Entry Points + +Main functions exported from `cognee/__init__.py`: +- `add(data, dataset_name)` - Ingest data +- `cognify(datasets)` - Build knowledge graph +- `search(query_text, query_type)` - Query knowledge +- `memify(extraction_tasks, enrichment_tasks)` - Enrich graph +- `delete(data_id)` - Remove data +- `config()` - Configuration management +- `datasets()` - Dataset operations + +All functions are async - use `await` or `asyncio.run()`. + +## Security Considerations + +Several security environment variables in `.env`: +- `ACCEPT_LOCAL_FILE_PATH` - Allow local file paths (default: True) +- `ALLOW_HTTP_REQUESTS` - Allow HTTP requests from Cognee (default: True) +- `ALLOW_CYPHER_QUERY` - Allow raw Cypher queries (default: True) +- `REQUIRE_AUTHENTICATION` - Enable API authentication (default: False) +- `ENABLE_BACKEND_ACCESS_CONTROL` - Multi-tenant isolation (default: True) + +For production deployments, review and tighten these settings. + +## Common Patterns + +### Creating a Custom Pipeline Task +```python +from cognee.modules.pipelines.tasks.Task import Task + +async def my_custom_task(data): + # Your logic here + processed_data = process(data) + return processed_data + +# Use in pipeline +task = Task(my_custom_task) +``` + +### Accessing Databases Directly +```python +from cognee.infrastructure.databases.graph import get_graph_engine +from cognee.infrastructure.databases.vector import get_vector_engine + +graph_engine = await get_graph_engine() +vector_engine = await get_vector_engine() +``` + +### Using LLM Gateway +```python +from cognee.infrastructure.llm.get_llm_client import get_llm_client + +llm_client = get_llm_client() +response = await llm_client.acreate_structured_output( + text_input="Your prompt", + system_prompt="System instructions", + response_model=YourPydanticModel +) +``` + +## Key Concepts + +### Datasets +Datasets are project-level containers that support organization, permissions, and isolated processing workflows. Each user can have multiple datasets with different access permissions. + +```python +# Create/use a dataset +await cognee.add(data, dataset_name="my_project") +await cognee.cognify(datasets=["my_project"]) +``` + +### DataPoints +Atomic knowledge units that form the foundation of graph structures. All graph nodes extend the `DataPoint` base class with versioning and metadata support. + +### Permissions System +Multi-tenant architecture with users, roles, and Access Control Lists (ACLs): +- Read, write, delete, and share permissions per dataset +- Enable with `ENABLE_BACKEND_ACCESS_CONTROL=True` +- Supports isolated databases per user+dataset (Kuzu, LanceDB, SQLite, Postgres) + +### Graph Visualization +Launch visualization server: +```bash +# Via CLI +cognee-cli -ui # Launches full stack with UI at http://localhost:3000 + +# Via Python +from cognee.api.v1.visualize import start_visualization_server +await start_visualization_server(port=8080) +``` + +## Debugging & Troubleshooting + +### Debug Configuration +- Set `LITELLM_LOG="DEBUG"` for verbose LLM logs (default: "ERROR") +- Enable debug mode: `ENV="development"` or `ENV="debug"` +- Disable telemetry: `TELEMETRY_DISABLED=1` +- Check logs in structured format (uses structlog) +- Use `debugpy` optional dependency for debugging: `pip install cognee[debug]` + +### Common Issues + +**Ollama + OpenAI Embeddings NoDataError** +- Issue: Mixing Ollama with OpenAI embeddings can cause errors +- Solution: Configure both LLM and embeddings to use the same provider, or ensure `HUGGINGFACE_TOKENIZER` is set when using Ollama + +**LM Studio Structured Output** +- Issue: LM Studio requires explicit instructor mode +- Solution: Set `LLM_INSTRUCTOR_MODE="json_schema_mode"` (or appropriate mode) + +**Default Provider Fallback** +- Issue: Configuring only LLM or only embeddings defaults the other to OpenAI +- Solution: Always configure both LLM and embedding providers, or ensure valid OpenAI API key + +**Permission Denied on Search** +- Behavior: Returns empty list rather than error (prevents information leakage) +- Solution: Check dataset permissions and user access rights + +**Database Connection Issues** +- Check: Verify database URLs, credentials, and that services are running +- Docker users: Use `DB_HOST=host.docker.internal` for local databases + +**Rate Limiting Errors** +- Enable client-side rate limiting: `LLM_RATE_LIMIT_ENABLED=true` +- Adjust limits: `LLM_RATE_LIMIT_REQUESTS` and `LLM_RATE_LIMIT_INTERVAL` + +## Resources + +- [Documentation](https://docs.cognee.ai/) +- [Discord Community](https://discord.gg/NQPKmU5CCg) +- [GitHub Issues](https://github.com/topoteretes/cognee/issues) +- [Example Notebooks](examples/python/) +- [Research Paper](https://arxiv.org/abs/2505.24478) - Optimizing knowledge graphs for LLM reasoning