Add S3 storage client and API routes for document management:
- Implement s3_routes.py with file upload, download, delete endpoints
- Enhance s3_client.py with improved error handling and operations
- Add S3 browser UI component with file viewing and management
- Implement FileViewer and PDFViewer components for storage preview
- Add Resizable and Sheet UI components for layout control
Update backend infrastructure:
- Add bulk operations and parameterized queries to postgres_impl.py
- Enhance document routes with improved type hints
- Update API server registration for new S3 routes
- Refine upload routes and utility functions
Modernize web UI:
- Integrate S3 browser into main application layout
- Update localization files for storage UI strings
- Add storage settings to application configuration
- Sync package dependencies and lock files
Remove obsolete reproduction script:
- Delete reproduce_citation.py (replaced by test suite)
Update configuration:
- Enhance pyrightconfig.json for stricter type checking
- Add KaTeX extensions (mhchem for chemistry, copy-tex for copying)
- Add CASCADE to AGE extension for PostgreSQL
- Remove future dependency, replace passlib with bcrypt
- Fix Jina embedding configuration and provider defaults
- Update gunicorn help text and bump API version to 0258
- Documentation and README updates
• Add unist-util-visit dependency
• Create remarkFootnotes plugin
• Style footnotes with CSS classes
• Support footnote refs and definitions
• Update Vite config for new dependency
- Set OpenAPI schema URL to `/openapi.json`
- Set docs URL to `/docs`
- Set redoc URL to `/redoc`
- Update Vite config for API docs routing
- Ensure proper path handling for docs endpoints
- Removed local Vite config file
- Updated dev scripts to use default config
- Added env.d.ts for type definitions
- Enhanced Vite config with dynamic proxy
- Simplified build and dev script commands
