Commit graph

3739 commits

Author SHA1 Message Date
clssck
abb44eccb1 feat(lightrag): improve entity extraction prompts and rerank chunking
Enhance entity extraction with better structured prompts:
- Reorganize prompt format for improved clarity and consistency
- Add XML-style formatting tags for better LLM parsing
- Include language parameter in keywords extraction cache key
- Fix language parameter usage in keywords_extraction prompt

Improve rerank module with chunking fixes:
- Fix top_n behavior to limit documents instead of chunks
- Add Cohere reranker support with proper chunking
- Improve error handling for rerank API responses

Update operate.py:
- Better entity extraction parsing and validation
- Improved cache key generation for multilingual support
2025-12-12 16:45:14 +01:00
clssck
59e89772de refactor: consolidate to PostgreSQL-only backend and modernize stack
Remove legacy storage implementations and deprecated examples:
- Delete FAISS, JSON, Memgraph, Milvus, MongoDB, Nano Vector DB, Neo4j, NetworkX, Qdrant, Redis storage backends
- Remove Kubernetes deployment manifests and installation scripts
- Delete unofficial examples for deprecated backends and offline deployment docs
Streamline core infrastructure:
- Consolidate storage layer to PostgreSQL-only implementation
- Add full-text search caching with FTS cache module
- Implement metrics collection and monitoring pipeline
- Add explain and metrics API routes
Modernize frontend and tooling:
- Switch web UI to Bun with bun.lock, remove npm and pnpm lockfiles
- Update Dockerfile for PostgreSQL-only deployment
- Add Makefile for common development tasks
- Update environment and configuration examples
Enhance evaluation and testing capabilities:
- Add prompt optimization with DSPy and auto-tuning
- Implement ground truth regeneration and variant testing
- Add prompt debugging and response comparison utilities
- Expand test coverage with new integration scenarios
Simplify dependencies and configuration:
- Remove offline-specific requirement files
- Update pyproject.toml with streamlined dependencies
- Add Python version pinning with .python-version
- Create project guidelines in CLAUDE.md and AGENTS.md
2025-12-12 16:28:49 +01:00
clssck
da9070ecf7 refactor: remove legacy storage implementations and k8s deployment
Remove deprecated storage backends and Kubernetes deployment configuration:
- Delete unused storage implementations: FAISS, JSON, Memgraph, Milvus, MongoDB, Nano Vector DB, Neo4j, NetworkX, Qdrant, Redis
- Remove Kubernetes deployment manifests and installation scripts
- Delete legacy examples for deprecated backends
- Consolidate to PostgreSQL-only storage backend
Streamline dependencies and add new capabilities:
- Remove deprecated code documentation and migration guides
- Add full-text search caching layer with FTS cache module
- Implement metrics collection and monitoring pipeline
- Add explain and metrics API routes
- Simplify configuration with PostgreSQL-focused setup
Update documentation and configuration:
- Rewrite README to focus on supported features
- Update environment and configuration examples
- Remove Kubernetes-specific documentation
- Add new utility scripts for PDF uploads and pipeline monitoring
2025-12-09 14:02:00 +01:00
clssck
95c83abcf8 feat(lightrag,lightrag_webui): add S3 storage integration and UI
Add S3 storage client and API routes for document management:
- Implement s3_routes.py with file upload, download, delete endpoints
- Enhance s3_client.py with improved error handling and operations
- Add S3 browser UI component with file viewing and management
- Implement FileViewer and PDFViewer components for storage preview
- Add Resizable and Sheet UI components for layout control
Update backend infrastructure:
- Add bulk operations and parameterized queries to postgres_impl.py
- Enhance document routes with improved type hints
- Update API server registration for new S3 routes
- Refine upload routes and utility functions
Modernize web UI:
- Integrate S3 browser into main application layout
- Update localization files for storage UI strings
- Add storage settings to application configuration
- Sync package dependencies and lock files
Remove obsolete reproduction script:
- Delete reproduce_citation.py (replaced by test suite)
Update configuration:
- Enhance pyrightconfig.json for stricter type checking
2025-12-07 11:04:38 +01:00
clssck
082a5a8fad test(lightrag,api): add comprehensive test coverage and S3 support
Add extensive test suites for API routes and utilities:
- Implement test_search_routes.py (406 lines) for search endpoint validation
- Implement test_upload_routes.py (724 lines) for document upload workflows
- Implement test_s3_client.py (618 lines) for S3 storage operations
- Implement test_citation_utils.py (352 lines) for citation extraction
- Implement test_chunking.py (216 lines) for text chunking validation
Add S3 storage client implementation:
- Create lightrag/storage/s3_client.py with S3 operations
- Add storage module initialization with exports
- Integrate S3 client with document upload handling
Enhance API routes and core functionality:
- Add search_routes.py with full-text and graph search endpoints
- Add upload_routes.py with multipart document upload support
- Update operate.py with bulk operations and health checks
- Enhance postgres_impl.py with bulk upsert and parameterized queries
- Update lightrag_server.py to register new API routes
- Improve utils.py with citation and formatting utilities
Update dependencies and configuration:
- Add S3 and test dependencies to pyproject.toml
- Update docker-compose.test.yml for testing environment
- Sync uv.lock with new dependencies
Apply code quality improvements across all modified files:
- Add type hints to function signatures
- Update imports and router initialization
- Fix logging and error handling
2025-12-05 23:13:39 +01:00
clssck
65d2cd16b1 feat(examples, lightrag): fix logging and code improvements
Fix logging output in evaluation test harness and examples:
- Replace print() statements with logger calls in e2e_test_harness.py
- Update copy_llm_cache_to_another_storage.py to use logger instead of print
- Remove redundant logging configuration in copy_llm_cache_to_another_storage.py
Fix path handling and typos:
- Correct makedirs() call in lightrag_openai_demo.py to create log_dir directly
- Update constants.py comments to clarify SOURCE_IDS_LIMIT_METHOD options
- Remove duplicate return statement in utils.py normalize_extracted_info()
- Fix error string formatting in chroma_impl.py with !s conversion
- Remove unused pipmaster import from chroma_impl.py
2025-12-05 18:10:19 +01:00
clssck
dd1413f3eb test(lightrag,examples): add prompt accuracy and quality tests
Add comprehensive test suites for prompt evaluation:
- test_prompt_accuracy.py: 365 lines testing prompt extraction accuracy
- test_prompt_quality_deep.py: 672 lines for deep quality analysis
- Refactor prompt.py to consolidate optimized variants (removed prompt_optimized.py)
- Apply ruff formatting and type hints across 30 files
- Update pyrightconfig.json for static type checking
- Modernize reproduce scripts and examples with improved type annotations
- Sync uv.lock dependencies
2025-12-05 16:39:52 +01:00
clssck
69358d830d test(lightrag,examples,api): comprehensive ruff formatting and type hints
Format entire codebase with ruff and add type hints across all modules:
- Apply ruff formatting to all Python files (121 files, 17K insertions)
- Add type hints to function signatures throughout lightrag core and API
- Update test suite with improved type annotations and docstrings
- Add pyrightconfig.json for static type checking configuration
- Create prompt_optimized.py and test_extraction_prompt_ab.py test files
- Update ruff.toml and .gitignore for improved linting configuration
- Standardize code style across examples, reproduce scripts, and utilities
2025-12-05 15:17:06 +01:00
clssck
a6b87df758 feat(postgres): add bulk operations and health check
- Implement bulk upsert_nodes/edges via UNWIND reducing round trips
- Add health_check for graph connectivity and AGE catalog status
- Switch to parameterized queries preventing Cypher injection
- Fix node ID sanitization: strip control chars, escape quotes
2025-12-03 18:19:26 +00:00
clssck
c5f230a30c test: fix env handling, add type hints, improve docs
Improve code quality and test robustness:
- Refactor environment variable parsing in rerank config using centralized get_env_value helper
- Add return type hints to all test methods for better type safety
- Fix patch path in test from lightrag.utils to lightrag.rerank for correct import location
- Clarify batch insert endpoint behavior regarding duplicate content rejection
- Expand .dockerignore to comprehensively exclude node_modules (200MB+), Python cache files, and venv directories
- Update dependency groups: align evaluation and test extras with pytest/pre-commit/ruff tools
2025-12-03 15:02:11 +01:00
clssck
9bae6267f6
chore: sync with upstream (#4)
* chore: sync with upstream

- Cohere rerank improvements
- Content deduplication
- Dependency updates

* fix: address CodeRabbit review feedback

- Harden env parsing for RERANK_MAX_TOKENS_PER_DOC with try/except
- Add @pytest.mark.offline to test_overlap_validation
- Remove unused doc_indices variable
2025-12-03 13:16:28 +01:00
clssck
8d099fc3ac chore: sync with upstream HKUDS/LightRAG
- Add KaTeX extensions (mhchem for chemistry, copy-tex for copying)
- Add CASCADE to AGE extension for PostgreSQL
- Remove future dependency, replace passlib with bcrypt
- Fix Jina embedding configuration and provider defaults
- Update gunicorn help text and bump API version to 0258
- Documentation and README updates
2025-12-01 21:30:19 +01:00
clssck
1bdd906753 chore(lightrag): remove legacy prompts and clean up prompt.py
Remove unused LLM-generated citation prompts that were kept for backward
compatibility but never referenced in codebase. Consolidate duplicate
instructions in entity summarization prompt and fix minor typos.

- Remove rag_response_with_llm_citations prompt (dead code)
- Remove naive_rag_response_with_llm_citations prompt (dead code)
- Remove unused cite_ready_* backward compatibility aliases
- Consolidate duplicate context/objectivity instructions in summarize prompt
- Fix typo in example (extra parenthesis)
- Clarify delimiter documentation comment
2025-12-01 21:02:44 +01:00
clssck
663ada943a chore: add citation system and enhance RAG UI components
Add citation tracking and display system across backend and frontend components.
Backend changes include citation.py for document attribution, enhanced query routes
with citation metadata, improved prompt templates, and PostgreSQL schema updates.
Frontend includes CitationMarker component, HoverCard UI, QuerySettings refinements,
and ChatMessage enhancements for displaying document sources. Update dependencies
and docker-compose test configuration for improved development workflow.
2025-12-01 17:50:00 +01:00
clssck
77df910525 chore: add citation system and code formatting setup
Add citation.py module for document citation tracking and management.
Configure Biome and Ruff for consistent code formatting across TypeScript
and Python. Update webui with improved component organization, API client
refactoring, and enhanced user interface patterns. Add formatting configs
and dependency updates for build toolchain optimization.
2025-11-30 20:51:43 +01:00
clssck
9f5948650e chore(lightrag): add wikipedia test dataset for evaluation
Add comprehensive test dataset with 7 domain-specific Wikipedia documents
(climate, finance, medical, sports) and corresponding test cases in JSON format.
Total of 2292 lines of test data across 8 files for RAG quality evaluation
and end-to-end testing infrastructure.
2025-11-30 20:14:52 +01:00
clssck
43af31f888 feat: add db_degree visibility and orphan connection UI
Graph Connectivity Awareness:
- Add db_degree property to all KG implementations (NetworkX, Postgres, Neo4j, Mongo, Memgraph)
- Show database degree vs visual degree in node panel with amber badge
- Add visual indicator (amber border) for nodes with hidden connections
- Add "Load X hidden connection(s)" button to expand hidden neighbors
- Add configurable "Expand Depth" setting (1-5) in graph settings
- Use global maxNodes setting for node expansion consistency

Orphan Connection UI:
- Add OrphanConnectionDialog component for manual orphan entity connection
- Add OrphanConnectionControl button in graph sidebar
- Expose /graph/orphans/connect API endpoint for frontend use

Backend Improvements:
- Add get_orphan_entities() and connect_orphan_entities() to base storage
- Add orphan connection configuration parameters
- Improve entity extraction with relationship density requirements

Frontend:
- Add graphExpandDepth and graphIncludeOrphans to settings store
- Add min_degree and include_orphans graph filtering parameters
- Update translations (en.json, zh.json)
2025-11-29 21:08:07 +01:00
clssck
ef7327bb3e chore(docker-compose, lightrag): optimize test infrastructure and add evaluation tools
Add comprehensive E2E testing infrastructure with PostgreSQL performance tuning,
Gunicorn multi-worker support, and evaluation scripts for RAGAS-based quality
assessment. Introduces 4 new evaluation utilities: compare_results.py for A/B test
analysis, download_wikipedia.py for reproducible test datasets, e2e_test_harness.py
for automated evaluation pipelines, and ingest_test_docs.py for batch document
ingestion. Updates docker-compose.test.yml with aggressive async settings, memory
limits, and optimized chunking parameters. Parallelize entity summarization in
operate.py for improved extraction performance. Fix typos in merge node/edge logs.
2025-11-29 10:39:20 +01:00
clssck
d2c9e6e2ec test(lightrag): add orphan connection feature with quality validation tests
Implement automatic orphan entity connection system that identifies entities with
no relationships and creates meaningful connections via vector similarity + LLM
validation. This improves knowledge graph connectivity and retrieval quality.
Changes:
- Add orphan connection configuration parameters (thresholds, cross-connect settings)
- Implement aconnect_orphan_entities() method with 4-step validation pipeline
- Add SQL templates for efficient orphan and candidate entity queries
- Create POST /graph/orphans/connect API endpoint with configurable parameters
- Add orphan connection validation prompt for LLM-based relationship verification
- Include relationship density requirement in extraction prompts to prevent orphans
- Update docker-compose.test.yml with optimized extraction parameters
- Add quality validation test suite (run_quality_tests.py) for retrieval evaluation
- Add unit test framework (test_orphan_connection_quality.py) with test cases
- Enable auto-run of orphan connection after document processing
2025-11-28 18:23:30 +01:00
clssck
b6074b9a81 chore(lightrag, lightrag_webui): improve code quality and security
- Extract PostgreSQL storage check into named variable for clarity
- Move APIRouter initialization into create_table_routes function scope
- Add robust type handling for database query results
- Add input validation for table names and pagination parameters
- Add regex-based SQL injection prevention for table name sanitization
- Improve clipboard copy fallback logic and error handling
- Add memoization for JSON serialization to prevent unnecessary recalculations
- Hide meta column from table explorer UI display
- Sort table columns alphabetically for consistent ordering
- Add keyboard accessibility to status filter buttons
- Add preprocessed status filter to document manager
- Update @tanstack/react-query from 5.60.0 to 5.87.1
- Extract dev storage config into constant to reduce duplication
- Update documentation comments for clarity
2025-11-27 21:39:42 +01:00
clssck
a9edadef45 feat: add Table Explorer feature with dynamic table data fetching and schema display
- Implemented Table Explorer component to allow users to select and view database tables.
- Added API calls for fetching table list, schema, and paginated data.
- Introduced row detail modal for displaying and copying row data.
- Enhanced DataTable component to support row click events.
- Updated UI components for better user experience and accessibility.
- Added mock data for development mode to facilitate testing.
- Updated localization files to include new terms related to tables.
- Modified settings store to include storage configuration for conditional UI rendering.
- Improved styling and layout for various components to align with new design standards.
2025-11-27 18:27:14 +01:00
clssck
48c7732edc feat: add automatic entity resolution with 3-layer matching
Implement automatic entity resolution to prevent duplicate nodes in the
knowledge graph. The system uses a 3-layer approach:

1. Case-insensitive exact matching (free, instant)
2. Fuzzy string matching >85% threshold (free, instant)
3. Vector similarity + LLM verification (for acronyms/synonyms)

Key features:
- Pre-resolution phase prevents race conditions in parallel processing
- Numeric suffix detection blocks false matches (IL-4 ≠ IL-13)
- PostgreSQL alias cache for fast lookups on subsequent ingestion
- Configurable thresholds via environment variables

Bug fixes included:
- Fix fuzzy matching false positives for numbered entities
- Fix alias cache not being populated (missing db parameter)
- Skip entity_aliases table from generic id index creation

New files:
- lightrag/entity_resolution/ - Core resolution module
- tests/test_entity_resolution/ - Unit tests
- docker/postgres-age-vector/ - Custom PG image with pgvector + AGE
- docker-compose.test.yml - Integration test environment

Configuration (env.example):
- ENTITY_RESOLUTION_ENABLED=true
- ENTITY_RESOLUTION_FUZZY_THRESHOLD=0.85
- ENTITY_RESOLUTION_VECTOR_THRESHOLD=0.5
- ENTITY_RESOLUTION_MAX_CANDIDATES=3
2025-11-27 15:35:02 +01:00
yangdx
4f12fe121d Change entity extraction logging from warning to info level
• Reduce log noise for empty entities
2025-11-27 11:00:34 +08:00
yangdx
93d445dfdd Add pipeline status lock function for legacy compatibility
- Add get_pipeline_status_lock function
- Return NamespaceLock for consistency
- Support workspace parameter
- Enable logging option
- Legacy code compatibility
2025-11-25 18:24:39 +08:00
EightyOliveira
8994c70f2f fix:exception handling order error 2025-11-25 16:36:41 +08:00
yangdx
48b67d3077 Handle missing WebUI assets gracefully without blocking server startup
- Change build check from error to warning
- Redirect to /docs when WebUI unavailable
- Add webui_available to health endpoint
- Only mount /webui if assets exist
- Return status tuple from build check
2025-11-25 02:51:55 +08:00
yangdx
8c4d7a00ad Refactor: Extract retry decorator to reduce code duplication in Neo4J storage
• Define READ_RETRY_EXCEPTIONS constant
• Create reusable READ_RETRY decorator
• Replace 11 duplicate retry decorators
• Improve code maintainability
• Add missing retry to edge_degrees_batch
2025-11-25 01:35:21 +08:00
yangdx
7aaa51cda9 Add retry decorators to Neo4j read operations for resilience 2025-11-24 22:28:15 +08:00
yangdx
7b76211066 Add fallback to AZURE_OPENAI_API_VERSION for embedding API version 2025-11-22 00:14:35 +08:00
yangdx
ffd8da512e Improve Azure OpenAI compatibility and error handling
• Reduce log noise for Azure content filters
• Add default API version fallback
• Change warning to debug log level
• Handle empty choices in streaming
• Better Azure OpenAI integration
2025-11-21 23:51:18 +08:00
yangdx
fafa1791f4 Fix Azure OpenAI model parameter to use deployment name consistently
- Use deployment name for Azure API calls
- Fix model param in embed function
- Consistent api_model logic
- Prevent Azure model name conflicts
2025-11-21 23:41:52 +08:00
yangdx
ac9f2574a5 Improve Azure OpenAI wrapper functions with full parameter support
• Add missing parameters to wrappers
• Update docstrings for clarity
• Ensure API consistency
• Fix parameter forwarding
• Maintain backward compatibility
2025-11-21 19:24:32 +08:00
yangdx
45f4f82392 Refactor Azure OpenAI client creation to support client_configs merging
- Handle None client_configs case
- Merge configs with explicit params
- Override client_configs with params
- Use dict unpacking for client init
- Maintain parameter precedence
2025-11-21 19:14:16 +08:00
yangdx
0c4cba3860 Fix double decoration in azure_openai_embed and document decorator usage
• Remove redundant @retry decorator
• Call openai_embed.func directly
• Add detailed decorator documentation
• Prevent double parameter injection
• Fix EmbeddingFunc wrapping issues
2025-11-21 18:03:53 +08:00
yangdx
b46c152306 Fix linting 2025-11-21 17:16:44 +08:00
yangdx
b709f8f869 Consolidate Azure OpenAI implementation into main OpenAI module
• Unified OpenAI/Azure client creation
• Azure module now re-exports functions
• Backward compatibility maintained
• Reduced code duplication
2025-11-21 17:12:33 +08:00
yangdx
66d6c7dd6f Refactor main function to provide sync CLI entry point 2025-11-21 13:11:55 +08:00
yangdx
02fdceb959 Update OpenAI client to use stable API and bump minimum version to 2.0.0
- Remove beta prefix from completions.parse
- Update OpenAI dependency to >=2.0.0
- Fix whitespace formatting
- Update all requirement files
- Clean up pyproject.toml dependencies
2025-11-21 12:55:44 +08:00
yangdx
9f69c5bf85 feat: Support structured output parsed from OpenAI
Added support for structured output (JSON mode) from the OpenAI API in `openai.py` and `azure_openai.py`.

When `response_format` is used to request structured data, the new logic checks for the `message.parsed` attribute. If it exists, it's serialized into a JSON string as the final content. If not, the code falls back to the existing `message.content` handling, ensuring backward compatibility.
2025-11-21 12:46:31 +08:00
yangdx
c9e1c86e81 Refactor keyword extraction handling to centralize response format logic
• Move response format to core function
• Remove duplicate format assignments
• Standardize keyword extraction flow
• Clean up redundant parameter handling
• Improve Azure OpenAI compatibility
2025-11-21 12:10:04 +08:00
yangdx
46ce6d9a13 Fix Azure OpenAI embedding model parameter fallback
- Use model param if provided
- Fall back to deployment name
- Fix embedding API call
- Improve parameter handling
2025-11-20 18:20:22 +08:00
Amritpal Singh
30e86fa331 use deployment variable which extracted value from .env file or have default value 2025-11-20 09:00:27 +00:00
yangdx
b7de694f48 Add comprehensive error logging across API routes
- Add error logs to Ollama API endpoints
- Replace logging with unified logger
- Log streaming query errors
- Add data query error logging
- Include stack traces for debugging
2025-11-19 22:50:06 +08:00
yangdx
0fb2925c6a Remove ascii_colors dependency and fix stream handling errors
• Remove ascii_colors.trace_exception calls
• Add SafeStreamHandler for closed streams
• Patch ascii_colors console handler
• Prevent ValueError on stream close
• Improve logging error handling
2025-11-19 21:38:17 +08:00
yangdx
6fea68bff9 Fix ChunkTokenLimitExceededError message formatting
- Prevent passes two separate string objects to __init__
- Maintain same error output
2025-11-19 18:50:45 +08:00
yangdx
f988a22652 Add token limit validation for character-only chunking
- Add ChunkTokenLimitExceededError exception
- Validate chunks against token limits
- Include chunk preview in error messages
- Add comprehensive test coverage
- Log warnings for oversized chunks
2025-11-19 18:32:43 +08:00
yangdx
95cd0ece74 Fix DOCX table extraction by escaping special characters in cells
- Add escape_cell() function
- Escape backslashes first
- Handle tabs and newlines
- Preserve tab-delimited format
- Prevent double-escaping issues
2025-11-19 09:54:35 +08:00
yangdx
87de2b3e9e Update XLSX extraction documentation to reflect current implementation 2025-11-19 04:26:41 +08:00
yangdx
0244699d81 Optimize XLSX extraction by using sheet.max_column instead of two-pass scan
• Remove two-pass row scanning approach
• Use built-in sheet.max_column property
• Simplify column width detection logic
• Improve memory efficiency
• Maintain column alignment preservation
2025-11-19 04:02:39 +08:00
yangdx
2b16016312 Optimize XLSX extraction to avoid storing all rows in memory
• Remove intermediate row storage
• Use iterator twice instead of list()
• Preserve column alignment logic
• Reduce memory footprint
• Maintain same output format
2025-11-19 03:48:36 +08:00