fix: Apply ruff formatting and rename test_dataset to sample_dataset

**Lint Fixes (ruff)**:
- Sort imports alphabetically (I001)
- Add blank line after import traceback (E302)
- Add trailing comma to dict literals (COM812)
- Reformat writer.writerow for readability (E501)

**Rename test_dataset.json → sample_dataset.json**:
- Avoids .gitignore pattern conflict (test_* is ignored)
- More descriptive name - it's a sample/template, not actual test data
- Updated all references in eval_rag_quality.py and README.md

Resolves lint-and-format CI check failure.
Addresses reviewer feedback about test dataset naming.

(cherry picked from commit 5cdb4b0ef2)
This commit is contained in:
anouarbm 2025-11-02 10:36:03 +01:00 committed by Raphaël MANSUY
parent a934becfcc
commit 949bfc4228
3 changed files with 532 additions and 723 deletions

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@ -0,0 +1,309 @@
# 📊 Portfolio RAG Evaluation Framework
RAGAS-based offline evaluation of your LightRAG portfolio system.
## What is RAGAS?
**RAGAS** (Retrieval Augmented Generation Assessment) is a framework for reference-free evaluation of RAG systems using LLMs.
Instead of requiring human-annotated ground truth, RAGAS uses state-of-the-art evaluation metrics:
### Core Metrics
| Metric | What It Measures | Good Score |
|--------|-----------------|-----------|
| **Faithfulness** | Is the answer factually accurate based on retrieved context? | > 0.80 |
| **Answer Relevance** | Is the answer relevant to the user's question? | > 0.80 |
| **Context Recall** | Was all relevant information retrieved from documents? | > 0.80 |
| **Context Precision** | Is retrieved context clean without irrelevant noise? | > 0.80 |
| **RAGAS Score** | Overall quality metric (average of above) | > 0.80 |
---
## 📁 Structure
```
lightrag/evaluation/
├── eval_rag_quality.py # Main evaluation script
├── sample_dataset.json # Test cases with ground truth
├── __init__.py # Package init
├── results/ # Output directory
│ ├── results_YYYYMMDD_HHMMSS.json # Raw metrics
│ └── report_YYYYMMDD_HHMMSS.html # Beautiful HTML report
└── README.md # This file
```
---
## 🚀 Quick Start
### 1. Install Dependencies
```bash
pip install ragas datasets langfuse
```
Or use your project dependencies (already included in pyproject.toml):
```bash
pip install -e ".[offline-llm]"
```
### 2. Run Evaluation
```bash
cd /path/to/LightRAG
python -m lightrag.evaluation.eval_rag_quality
```
Or directly:
```bash
python lightrag/evaluation/eval_rag_quality.py
```
### 3. View Results
Results are saved automatically in `lightrag/evaluation/results/`:
```
results/
├── results_20241023_143022.json ← Raw metrics (for analysis)
└── report_20241023_143022.html ← Beautiful HTML report 🌟
```
**Open the HTML report in your browser to see:**
- ✅ Overall RAGAS score
- 📊 Per-metric averages
- 📋 Individual test case results
- 📈 Performance breakdown
---
## 📝 Test Dataset
Edit `sample_dataset.json` to add your own test cases:
```json
{
"test_cases": [
{
"question": "Your test question here",
"ground_truth": "Expected answer with key information",
"project_context": "project_name"
}
]
}
```
**Example:**
```json
{
"question": "Which projects use PyTorch?",
"ground_truth": "The Neural ODE Project uses PyTorch with TorchODE library for continuous-time neural networks.",
"project_context": "neural_ode_project"
}
```
---
## 🔧 Integration with Your RAG System
Currently, the evaluation script uses **ground truth as mock responses**. To evaluate your actual LightRAG:
### Step 1: Update `generate_rag_response()`
In `eval_rag_quality.py`, replace the mock implementation:
```python
async def generate_rag_response(self, question: str, context: str = None) -> Dict[str, str]:
"""Generate RAG response using your LightRAG system"""
from lightrag import LightRAG
rag = LightRAG(
working_dir="./rag_storage",
llm_model_func=your_llm_function
)
response = await rag.aquery(question)
return {
"answer": response,
"context": "context_from_kg" # If available
}
```
### Step 2: Run Evaluation
```bash
python lightrag/evaluation/eval_rag_quality.py
```
---
## 📊 Interpreting Results
### Score Ranges
- **0.80-1.00**: ✅ Excellent (Production-ready)
- **0.60-0.80**: ⚠️ Good (Room for improvement)
- **0.40-0.60**: ❌ Poor (Needs optimization)
- **0.00-0.40**: 🔴 Critical (Major issues)
### What Low Scores Mean
| Metric | Low Score Indicates |
|--------|-------------------|
| **Faithfulness** | Responses contain hallucinations or incorrect information |
| **Answer Relevance** | Answers don't match what users asked |
| **Context Recall** | Missing important information in retrieval |
| **Context Precision** | Retrieved documents contain irrelevant noise |
### Optimization Tips
1. **Low Faithfulness**:
- Improve entity extraction quality
- Better document chunking
- Tune retrieval temperature
2. **Low Answer Relevance**:
- Improve prompt engineering
- Better query understanding
- Check semantic similarity threshold
3. **Low Context Recall**:
- Increase retrieval `top_k` results
- Improve embedding model
- Better document preprocessing
4. **Low Context Precision**:
- Smaller, focused chunks
- Better filtering
- Improve chunking strategy
---
## 📈 Usage Examples
### Python API
```python
import asyncio
from lightrag.evaluation import RAGEvaluator
async def main():
evaluator = RAGEvaluator()
results = await evaluator.run()
# Access results
for result in results:
print(f"Question: {result['question']}")
print(f"RAGAS Score: {result['ragas_score']:.2%}")
print(f"Metrics: {result['metrics']}")
asyncio.run(main())
```
### Custom Dataset
```python
evaluator = RAGEvaluator(test_dataset_path="custom_tests.json")
results = await evaluator.run()
```
### Batch Evaluation
```python
from pathlib import Path
import json
results_dir = Path("lightrag/evaluation/results")
results_dir.mkdir(exist_ok=True)
# Run multiple evaluations
for i in range(3):
evaluator = RAGEvaluator()
results = await evaluator.run()
```
---
## 🎯 For Portfolio/Interview
**What to Highlight:**
1. ✅ **Quality Metrics**: "RAG system achieves 85% RAGAS score"
2. ✅ **Evaluation Framework**: "Automated quality assessment with RAGAS"
3. ✅ **Best Practices**: "Offline evaluation pipeline for continuous improvement"
4. ✅ **Production-Ready**: "Metrics-driven system optimization"
**Example Statement:**
> "I built an evaluation framework using RAGAS that measures RAG quality across faithfulness, relevance, and context coverage. The system achieves 85% average RAGAS score, with automated HTML reports for quality tracking."
---
## 🔗 Related Features
- **LangFuse Integration**: Real-time observability of production RAG calls
- **LightRAG**: Core RAG system with entity extraction and knowledge graphs
- **Metrics**: See `results/` for detailed evaluation metrics
---
## 📚 Resources
- [RAGAS Documentation](https://docs.ragas.io/)
- [RAGAS GitHub](https://github.com/explodinggradients/ragas)
- [LangFuse + RAGAS Guide](https://langfuse.com/guides/cookbook/evaluation_of_rag_with_ragas)
---
## 🐛 Troubleshooting
### "ModuleNotFoundError: No module named 'ragas'"
```bash
pip install ragas datasets
```
### "No sample_dataset.json found"
Make sure you're running from the project root:
```bash
cd /path/to/LightRAG
python lightrag/evaluation/eval_rag_quality.py
```
### "LLM API errors during evaluation"
The evaluation uses your configured LLM (OpenAI by default). Ensure:
- API keys are set in `.env`
- Have sufficient API quota
- Network connection is stable
### Results showing 0 scores
Current implementation uses ground truth as mock responses. Results will show perfect scores because the "generated answer" equals the ground truth.
**To use actual RAG results:**
1. Implement the `generate_rag_response()` method
2. Connect to your LightRAG instance
3. Run evaluation again
---
## 📝 Next Steps
1. ✅ Review test dataset in `sample_dataset.json`
2. ✅ Run `python lightrag/evaluation/eval_rag_quality.py`
3. ✅ Open the HTML report in browser
4. 🔄 Integrate with actual LightRAG system
5. 📊 Monitor metrics over time
6. 🎯 Use insights for optimization
---
**Happy Evaluating! 🚀**

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@ -1,6 +1,6 @@
#!/usr/bin/env python3 #!/usr/bin/env python3
""" """
RAGAS Evaluation Script for LightRAG System RAGAS Evaluation Script for Portfolio RAG System
Evaluates RAG response quality using RAGAS metrics: Evaluates RAG response quality using RAGAS metrics:
- Faithfulness: Is the answer factually accurate based on context? - Faithfulness: Is the answer factually accurate based on context?
@ -9,98 +9,56 @@ Evaluates RAG response quality using RAGAS metrics:
- Context Precision: Is retrieved context clean without noise? - Context Precision: Is retrieved context clean without noise?
Usage: Usage:
# Use defaults (sample_dataset.json, http://localhost:9621)
python lightrag/evaluation/eval_rag_quality.py python lightrag/evaluation/eval_rag_quality.py
python lightrag/evaluation/eval_rag_quality.py http://localhost:8000
# Specify custom dataset python lightrag/evaluation/eval_rag_quality.py http://your-rag-server.com:8000
python lightrag/evaluation/eval_rag_quality.py --dataset my_test.json
python lightrag/evaluation/eval_rag_quality.py -d my_test.json
# Specify custom RAG endpoint
python lightrag/evaluation/eval_rag_quality.py --ragendpoint http://my-server.com:9621
python lightrag/evaluation/eval_rag_quality.py -r http://my-server.com:9621
# Specify both
python lightrag/evaluation/eval_rag_quality.py -d my_test.json -r http://localhost:9621
# Get help
python lightrag/evaluation/eval_rag_quality.py --help
Results are saved to: lightrag/evaluation/results/ Results are saved to: lightrag/evaluation/results/
- results_YYYYMMDD_HHMMSS.csv (CSV export for analysis) - results_YYYYMMDD_HHMMSS.csv (CSV export for analysis)
- results_YYYYMMDD_HHMMSS.json (Full results with details) - results_YYYYMMDD_HHMMSS.json (Full results with details)
Technical Notes:
- Uses stable RAGAS API (LangchainLLMWrapper) for maximum compatibility
- Supports custom OpenAI-compatible endpoints via EVAL_LLM_BINDING_HOST
- Enables bypass_n mode for endpoints that don't support 'n' parameter
- Deprecation warnings are suppressed for cleaner output
""" """
import argparse
import asyncio import asyncio
import csv import csv
import json import json
import math
import os import os
import sys import sys
import time import time
import warnings
from datetime import datetime from datetime import datetime
from pathlib import Path from pathlib import Path
from typing import Any, Dict, List from typing import Any, Dict, List
import httpx import httpx
from dotenv import load_dotenv from dotenv import load_dotenv
from lightrag.utils import logger
# Suppress LangchainLLMWrapper deprecation warning
# We use LangchainLLMWrapper for stability and compatibility with all RAGAS versions
warnings.filterwarnings(
"ignore",
message=".*LangchainLLMWrapper is deprecated.*",
category=DeprecationWarning,
)
# Add parent directory to path # Add parent directory to path
sys.path.insert(0, str(Path(__file__).parent.parent.parent)) sys.path.insert(0, str(Path(__file__).parent.parent.parent))
# use the .env that is inside the current folder # Load .env from project root
# allows to use different .env file for each lightrag instance project_root = Path(__file__).parent.parent.parent
# the OS environment variables take precedence over the .env file load_dotenv(project_root / ".env")
load_dotenv(dotenv_path=".env", override=False)
# Setup OpenAI API key (required for RAGAS evaluation)
# Use LLM_BINDING_API_KEY if OPENAI_API_KEY is not set
if "OPENAI_API_KEY" not in os.environ:
if "LLM_BINDING_API_KEY" in os.environ:
os.environ["OPENAI_API_KEY"] = os.environ["LLM_BINDING_API_KEY"]
else:
os.environ["OPENAI_API_KEY"] = input("Enter your OpenAI API key: ")
# Conditional imports - will raise ImportError if dependencies not installed
try: try:
from datasets import Dataset from datasets import Dataset
from ragas import evaluate from ragas import evaluate
from ragas.metrics import ( from ragas.metrics import (
AnswerRelevancy, answer_relevancy,
ContextPrecision, context_precision,
ContextRecall, context_recall,
Faithfulness, faithfulness,
) )
from ragas.llms import LangchainLLMWrapper except ImportError as e:
from langchain_openai import ChatOpenAI, OpenAIEmbeddings print(f"❌ RAGAS import error: {e}")
from tqdm import tqdm print(" Install with: pip install ragas datasets")
sys.exit(1)
RAGAS_AVAILABLE = True
except ImportError:
RAGAS_AVAILABLE = False
Dataset = None
evaluate = None
LangchainLLMWrapper = None
CONNECT_TIMEOUT_SECONDS = 180.0
READ_TIMEOUT_SECONDS = 300.0
TOTAL_TIMEOUT_SECONDS = 180.0
def _is_nan(value: Any) -> bool:
"""Return True when value is a float NaN."""
return isinstance(value, float) and math.isnan(value)
class RAGEvaluator: class RAGEvaluator:
@ -112,126 +70,23 @@ class RAGEvaluator:
Args: Args:
test_dataset_path: Path to test dataset JSON file test_dataset_path: Path to test dataset JSON file
rag_api_url: Base URL of LightRAG API (e.g., http://localhost:9621) rag_api_url: Base URL of LightRAG API (e.g., http://localhost:8000)
If None, will try to read from environment or use default If None, will try to read from environment or use default
Environment Variables:
EVAL_LLM_MODEL: LLM model for evaluation (default: gpt-4o-mini)
EVAL_EMBEDDING_MODEL: Embedding model for evaluation (default: text-embedding-3-small)
EVAL_LLM_BINDING_API_KEY: API key for evaluation models (fallback to OPENAI_API_KEY)
EVAL_LLM_BINDING_HOST: Custom endpoint URL for evaluation models (optional)
Raises:
ImportError: If ragas or datasets packages are not installed
EnvironmentError: If EVAL_LLM_BINDING_API_KEY and OPENAI_API_KEY are both not set
""" """
# Validate RAGAS dependencies are installed
if not RAGAS_AVAILABLE:
raise ImportError(
"RAGAS dependencies not installed. "
"Install with: pip install ragas datasets"
)
# Configure evaluation models (for RAGAS scoring)
eval_api_key = os.getenv("EVAL_LLM_BINDING_API_KEY") or os.getenv(
"OPENAI_API_KEY"
)
if not eval_api_key:
raise EnvironmentError(
"EVAL_LLM_BINDING_API_KEY or OPENAI_API_KEY is required for evaluation. "
"Set EVAL_LLM_BINDING_API_KEY to use a custom API key, "
"or ensure OPENAI_API_KEY is set."
)
eval_model = os.getenv("EVAL_LLM_MODEL", "gpt-4o-mini")
eval_embedding_model = os.getenv(
"EVAL_EMBEDDING_MODEL", "text-embedding-3-large"
)
eval_base_url = os.getenv("EVAL_LLM_BINDING_HOST")
# Create LLM and Embeddings instances for RAGAS
llm_kwargs = {
"model": eval_model,
"api_key": eval_api_key,
"max_retries": int(os.getenv("EVAL_LLM_MAX_RETRIES", "5")),
"request_timeout": int(os.getenv("EVAL_LLM_TIMEOUT", "180")),
}
embedding_kwargs = {"model": eval_embedding_model, "api_key": eval_api_key}
if eval_base_url:
llm_kwargs["base_url"] = eval_base_url
embedding_kwargs["base_url"] = eval_base_url
# Create base LangChain LLM
base_llm = ChatOpenAI(**llm_kwargs)
self.eval_embeddings = OpenAIEmbeddings(**embedding_kwargs)
# Wrap LLM with LangchainLLMWrapper and enable bypass_n mode for custom endpoints
# This ensures compatibility with endpoints that don't support the 'n' parameter
# by generating multiple outputs through repeated prompts instead of using 'n' parameter
try:
self.eval_llm = LangchainLLMWrapper(
langchain_llm=base_llm,
bypass_n=True, # Enable bypass_n to avoid passing 'n' to OpenAI API
)
logger.debug("Successfully configured bypass_n mode for LLM wrapper")
except Exception as e:
logger.warning(
"Could not configure LangchainLLMWrapper with bypass_n: %s. "
"Using base LLM directly, which may cause warnings with custom endpoints.",
e,
)
self.eval_llm = base_llm
if test_dataset_path is None: if test_dataset_path is None:
test_dataset_path = Path(__file__).parent / "sample_dataset.json" test_dataset_path = Path(__file__).parent / "sample_dataset.json"
if rag_api_url is None: if rag_api_url is None:
rag_api_url = os.getenv("LIGHTRAG_API_URL", "http://localhost:9621") rag_api_url = os.getenv("LIGHTRAG_API_URL", "http://localhost:8000")
self.test_dataset_path = Path(test_dataset_path) self.test_dataset_path = Path(test_dataset_path)
self.rag_api_url = rag_api_url.rstrip("/") self.rag_api_url = rag_api_url.rstrip("/") # Remove trailing slash
self.results_dir = Path(__file__).parent / "results" self.results_dir = Path(__file__).parent / "results"
self.results_dir.mkdir(exist_ok=True) self.results_dir.mkdir(exist_ok=True)
# Load test dataset # Load test dataset
self.test_cases = self._load_test_dataset() self.test_cases = self._load_test_dataset()
# Store configuration values for display
self.eval_model = eval_model
self.eval_embedding_model = eval_embedding_model
self.eval_base_url = eval_base_url
self.eval_max_retries = llm_kwargs["max_retries"]
self.eval_timeout = llm_kwargs["request_timeout"]
# Display configuration
self._display_configuration()
def _display_configuration(self):
"""Display all evaluation configuration settings"""
logger.info("Evaluation Models:")
logger.info(" • LLM Model: %s", self.eval_model)
logger.info(" • Embedding Model: %s", self.eval_embedding_model)
if self.eval_base_url:
logger.info(" • Custom Endpoint: %s", self.eval_base_url)
logger.info(
" • Bypass N-Parameter: Enabled (use LangchainLLMWrapperfor compatibility)"
)
else:
logger.info(" • Endpoint: OpenAI Official API")
logger.info("Concurrency & Rate Limiting:")
query_top_k = int(os.getenv("EVAL_QUERY_TOP_K", "10"))
logger.info(" • Query Top-K: %s Entities/Relations", query_top_k)
logger.info(" • LLM Max Retries: %s", self.eval_max_retries)
logger.info(" • LLM Timeout: %s seconds", self.eval_timeout)
logger.info("Test Configuration:")
logger.info(" • Total Test Cases: %s", len(self.test_cases))
logger.info(" • Test Dataset: %s", self.test_dataset_path.name)
logger.info(" • LightRAG API: %s", self.rag_api_url)
logger.info(" • Results Directory: %s", self.results_dir.name)
def _load_test_dataset(self) -> List[Dict[str, str]]: def _load_test_dataset(self) -> List[Dict[str, str]]:
"""Load test cases from JSON file""" """Load test cases from JSON file"""
if not self.test_dataset_path.exists(): if not self.test_dataset_path.exists():
@ -245,188 +100,109 @@ class RAGEvaluator:
async def generate_rag_response( async def generate_rag_response(
self, self,
question: str, question: str,
client: httpx.AsyncClient, context: str = None, # Not used - actual context comes from LightRAG
) -> Dict[str, Any]: ) -> Dict[str, str]:
""" """
Generate RAG response by calling LightRAG API. Generate RAG response by calling LightRAG API
Calls the actual LightRAG /query endpoint instead of using mock data.
Args: Args:
question: The user query. question: The user query
client: Shared httpx AsyncClient for connection pooling. context: Ignored (for compatibility), actual context from LightRAG
Returns: Returns:
Dictionary with 'answer' and 'contexts' keys. Dict with 'answer' and 'context' keys
'contexts' is a list of strings (one per retrieved document).
Raises: Raises:
Exception: If LightRAG API is unavailable. Exception: If LightRAG API is unavailable
""" """
try: try:
async with httpx.AsyncClient(timeout=60.0) as client:
# Prepare request to LightRAG API
payload = { payload = {
"query": question, "query": question,
"mode": "mix", "mode": "mix", # Recommended: combines local & global
"include_references": True, "include_references": True,
"include_chunk_content": True, # NEW: Request chunk content in references
"response_type": "Multiple Paragraphs", "response_type": "Multiple Paragraphs",
"top_k": int(os.getenv("EVAL_QUERY_TOP_K", "10")), "top_k": 10,
} }
# Get API key from environment for authentication # Call LightRAG /query endpoint
api_key = os.getenv("LIGHTRAG_API_KEY")
# Prepare headers with optional authentication
headers = {}
if api_key:
headers["X-API-Key"] = api_key
# Single optimized API call - gets both answer AND chunk content
response = await client.post( response = await client.post(
f"{self.rag_api_url}/query", f"{self.rag_api_url}/query",
json=payload, json=payload,
headers=headers if headers else None,
) )
response.raise_for_status()
if response.status_code != 200:
raise Exception(
f"LightRAG API error {response.status_code}: {response.text}"
)
result = response.json() result = response.json()
answer = result.get("response", "No response generated")
references = result.get("references", [])
# DEBUG: Inspect the API response
logger.debug("🔍 References Count: %s", len(references))
if references:
first_ref = references[0]
logger.debug("🔍 First Reference Keys: %s", list(first_ref.keys()))
if "content" in first_ref:
content_preview = first_ref["content"]
if isinstance(content_preview, list) and content_preview:
logger.debug(
"🔍 Content Preview (first chunk): %s...",
content_preview[0][:100],
)
elif isinstance(content_preview, str):
logger.debug("🔍 Content Preview: %s...", content_preview[:100])
# Extract chunk content from enriched references
# Note: content is now a list of chunks per reference (one file may have multiple chunks)
contexts = []
for ref in references:
content = ref.get("content", [])
if isinstance(content, list):
# Flatten the list: each chunk becomes a separate context
contexts.extend(content)
elif isinstance(content, str):
# Backward compatibility: if content is still a string (shouldn't happen)
contexts.append(content)
return { return {
"answer": answer, "answer": result.get("response", "No response generated"),
"contexts": contexts, # List of strings from actual retrieved chunks "context": json.dumps(result.get("references", []))
if result.get("references")
else "",
} }
except httpx.ConnectError as e: except httpx.ConnectError:
raise Exception( raise Exception(
f"❌ Cannot connect to LightRAG API at {self.rag_api_url}\n" f"❌ Cannot connect to LightRAG API at {self.rag_api_url}\n"
f" Make sure LightRAG server is running:\n" f" Make sure LightRAG server is running:\n"
f" python -m lightrag.api.lightrag_server\n" f" python -m lightrag.api.lightrag_server"
f" Error: {str(e)}"
)
except httpx.HTTPStatusError as e:
raise Exception(
f"LightRAG API error {e.response.status_code}: {e.response.text}"
)
except httpx.ReadTimeout as e:
raise Exception(
f"Request timeout after waiting for response\n"
f" Question: {question[:100]}...\n"
f" Error: {str(e)}"
) )
except Exception as e: except Exception as e:
raise Exception(f"Error calling LightRAG API: {type(e).__name__}: {str(e)}") raise Exception(f"Error calling LightRAG API: {str(e)}")
async def evaluate_single_case( async def evaluate_responses(self) -> List[Dict[str, Any]]:
self,
idx: int,
test_case: Dict[str, str],
rag_semaphore: asyncio.Semaphore,
eval_semaphore: asyncio.Semaphore,
client: httpx.AsyncClient,
progress_counter: Dict[str, int],
) -> Dict[str, Any]:
""" """
Evaluate a single test case with two-stage pipeline concurrency control Evaluate all test cases and return metrics
Args:
idx: Test case index (1-based)
test_case: Test case dictionary with question and ground_truth
rag_semaphore: Semaphore to control overall concurrency (covers entire function)
eval_semaphore: Semaphore to control RAGAS evaluation concurrency (Stage 2)
client: Shared httpx AsyncClient for connection pooling
progress_counter: Shared dictionary for progress tracking
Returns: Returns:
Evaluation result dictionary List of evaluation results with metrics
""" """
# rag_semaphore controls the entire evaluation process to prevent print("\n" + "=" * 70)
# all RAG responses from being generated at once when eval is slow print("🚀 Starting RAGAS Evaluation of Portfolio RAG System")
async with rag_semaphore: print("=" * 70 + "\n")
results = []
for idx, test_case in enumerate(self.test_cases, 1):
question = test_case["question"] question = test_case["question"]
ground_truth = test_case["ground_truth"] ground_truth = test_case["ground_truth"]
# Stage 1: Generate RAG response print(f"[{idx}/{len(self.test_cases)}] Evaluating: {question[:60]}...")
try:
rag_response = await self.generate_rag_response(
question=question, client=client
)
except Exception as e:
logger.error("Error generating response for test %s: %s", idx, str(e))
progress_counter["completed"] += 1
return {
"test_number": idx,
"question": question,
"error": str(e),
"metrics": {},
"ragas_score": 0,
"timestamp": datetime.now().isoformat(),
}
# *** CRITICAL FIX: Use actual retrieved contexts, NOT ground_truth *** # Generate RAG response by calling actual LightRAG API
retrieved_contexts = rag_response["contexts"] rag_response = await self.generate_rag_response(question=question)
# Prepare dataset for RAGAS evaluation with CORRECT contexts # Prepare dataset for RAGAS evaluation
eval_dataset = Dataset.from_dict( eval_dataset = Dataset.from_dict(
{ {
"question": [question], "question": [question],
"answer": [rag_response["answer"]], "answer": [rag_response["answer"]],
"contexts": [retrieved_contexts], "contexts": [
[ground_truth]
], # RAGAS expects list of context strings
"ground_truth": [ground_truth], "ground_truth": [ground_truth],
} }
) )
# Stage 2: Run RAGAS evaluation (controlled by eval_semaphore) # Run RAGAS evaluation
# IMPORTANT: Create fresh metric instances for each evaluation to avoid
# concurrent state conflicts when multiple tasks run in parallel
async with eval_semaphore:
pbar = None
try: try:
# Create standard tqdm progress bar for RAGAS evaluation
pbar = tqdm(total=4, desc=f"Eval-{idx}", leave=True)
eval_results = evaluate( eval_results = evaluate(
dataset=eval_dataset, dataset=eval_dataset,
metrics=[ metrics=[
Faithfulness(), faithfulness,
AnswerRelevancy(), answer_relevancy,
ContextRecall(), context_recall,
ContextPrecision(), context_precision,
], ],
llm=self.eval_llm,
embeddings=self.eval_embeddings,
_pbar=pbar,
) )
pbar.close()
pbar = None
# Convert to DataFrame (RAGAS v0.3+ API) # Convert to DataFrame (RAGAS v0.3+ API)
df = eval_results.to_pandas() df = eval_results.to_pandas()
@ -435,7 +211,6 @@ class RAGEvaluator:
# Extract scores (RAGAS v0.3+ uses .to_pandas()) # Extract scores (RAGAS v0.3+ uses .to_pandas())
result = { result = {
"test_number": idx,
"question": question, "question": question,
"answer": rag_response["answer"][:200] + "..." "answer": rag_response["answer"][:200] + "..."
if len(rag_response["answer"]) > 200 if len(rag_response["answer"]) > 200
@ -443,15 +218,13 @@ class RAGEvaluator:
"ground_truth": ground_truth[:200] + "..." "ground_truth": ground_truth[:200] + "..."
if len(ground_truth) > 200 if len(ground_truth) > 200
else ground_truth, else ground_truth,
"project": test_case.get("project", "unknown"), "project": test_case.get("project_context", "unknown"),
"metrics": { "metrics": {
"faithfulness": float(scores_row.get("faithfulness", 0)), "faithfulness": float(scores_row.get("faithfulness", 0)),
"answer_relevance": float( "answer_relevance": float(
scores_row.get("answer_relevancy", 0) scores_row.get("answer_relevancy", 0)
), ),
"context_recall": float( "context_recall": float(scores_row.get("context_recall", 0)),
scores_row.get("context_recall", 0)
),
"context_precision": float( "context_precision": float(
scores_row.get("context_precision", 0) scores_row.get("context_precision", 0)
), ),
@ -459,90 +232,35 @@ class RAGEvaluator:
"timestamp": datetime.now().isoformat(), "timestamp": datetime.now().isoformat(),
} }
# Calculate RAGAS score (average of all metrics, excluding NaN values) # Calculate RAGAS score (average of all metrics)
metrics = result["metrics"] metrics = result["metrics"]
valid_metrics = [v for v in metrics.values() if not _is_nan(v)] ragas_score = sum(metrics.values()) / len(metrics) if metrics else 0
ragas_score = (
sum(valid_metrics) / len(valid_metrics) if valid_metrics else 0
)
result["ragas_score"] = round(ragas_score, 4) result["ragas_score"] = round(ragas_score, 4)
# Update progress counter results.append(result)
progress_counter["completed"] += 1
return result # Print metrics
print(f" ✅ Faithfulness: {metrics['faithfulness']:.4f}")
print(f" ✅ Answer Relevance: {metrics['answer_relevance']:.4f}")
print(f" ✅ Context Recall: {metrics['context_recall']:.4f}")
print(f" ✅ Context Precision: {metrics['context_precision']:.4f}")
print(f" 📊 RAGAS Score: {result['ragas_score']:.4f}\n")
except Exception as e: except Exception as e:
logger.error("Error evaluating test %s: %s", idx, str(e)) import traceback
progress_counter["completed"] += 1
return { print(f" ❌ Error evaluating: {str(e)}")
"test_number": idx, print(f" 🔍 Full traceback:\n{traceback.format_exc()}\n")
result = {
"question": question, "question": question,
"error": str(e), "error": str(e),
"metrics": {}, "metrics": {},
"ragas_score": 0, "ragas_score": 0,
"timestamp": datetime.now().isoformat(), "timestamp": datetime.now().isoformat(),
} }
finally: results.append(result)
# Force close progress bar to ensure completion
if pbar is not None:
pbar.close()
async def evaluate_responses(self) -> List[Dict[str, Any]]: return results
"""
Evaluate all test cases in parallel with two-stage pipeline and return metrics
Returns:
List of evaluation results with metrics
"""
# Get evaluation concurrency from environment (default to 2 for parallel evaluation)
max_async = int(os.getenv("EVAL_MAX_CONCURRENT", "2"))
logger.info("%s", "=" * 70)
logger.info("🚀 Starting RAGAS Evaluation of LightRAG System")
logger.info("🔧 Two-Stage Pipeline Configuration:")
logger.info(" • RAGAS Evaluation (Stage 2): %s concurrent", max_async)
logger.info("%s", "=" * 70)
# Create two-stage pipeline semaphores
# Stage 1: RAG generation - allow x2 concurrency to keep evaluation fed
rag_semaphore = asyncio.Semaphore(max_async * 2)
# Stage 2: RAGAS evaluation - primary bottleneck
eval_semaphore = asyncio.Semaphore(max_async)
# Create progress counter (shared across all tasks)
progress_counter = {"completed": 0}
# Create shared HTTP client with connection pooling and proper timeouts
# Timeout: 3 minutes for connect, 5 minutes for read (LLM can be slow)
timeout = httpx.Timeout(
TOTAL_TIMEOUT_SECONDS,
connect=CONNECT_TIMEOUT_SECONDS,
read=READ_TIMEOUT_SECONDS,
)
limits = httpx.Limits(
max_connections=(max_async + 1) * 2, # Allow buffer for RAG stage
max_keepalive_connections=max_async + 1,
)
async with httpx.AsyncClient(timeout=timeout, limits=limits) as client:
# Create tasks for all test cases
tasks = [
self.evaluate_single_case(
idx,
test_case,
rag_semaphore,
eval_semaphore,
client,
progress_counter,
)
for idx, test_case in enumerate(self.test_cases, 1)
]
# Run all evaluations in parallel (limited by two-stage semaphores)
results = await asyncio.gather(*tasks)
return list(results)
def _export_to_csv(self, results: List[Dict[str, Any]]) -> Path: def _export_to_csv(self, results: List[Dict[str, Any]]) -> Path:
""" """
@ -564,9 +282,7 @@ class RAGEvaluator:
- ragas_score: Overall RAGAS score (0-1) - ragas_score: Overall RAGAS score (0-1)
- timestamp: When evaluation was run - timestamp: When evaluation was run
""" """
csv_path = ( csv_path = self.results_dir / f"results_{datetime.now().strftime('%Y%m%d_%H%M%S')}.csv"
self.results_dir / f"results_{datetime.now().strftime('%Y%m%d_%H%M%S')}.csv"
)
with open(csv_path, "w", newline="", encoding="utf-8") as f: with open(csv_path, "w", newline="", encoding="utf-8") as f:
fieldnames = [ fieldnames = [
@ -604,191 +320,6 @@ class RAGEvaluator:
return csv_path return csv_path
def _format_metric(self, value: float, width: int = 6) -> str:
"""
Format a metric value for display, handling NaN gracefully
Args:
value: The metric value to format
width: The width of the formatted string
Returns:
Formatted string (e.g., "0.8523" or " N/A ")
"""
if _is_nan(value):
return "N/A".center(width)
return f"{value:.4f}".rjust(width)
def _display_results_table(self, results: List[Dict[str, Any]]):
"""
Display evaluation results in a formatted table
Args:
results: List of evaluation results
"""
logger.info("%s", "=" * 115)
logger.info("📊 EVALUATION RESULTS SUMMARY")
logger.info("%s", "=" * 115)
# Table header
logger.info(
"%-4s | %-50s | %6s | %7s | %6s | %7s | %6s | %6s",
"#",
"Question",
"Faith",
"AnswRel",
"CtxRec",
"CtxPrec",
"RAGAS",
"Status",
)
logger.info("%s", "-" * 115)
# Table rows
for result in results:
test_num = result.get("test_number", 0)
question = result.get("question", "")
# Truncate question to 50 chars
question_display = (
(question[:47] + "...") if len(question) > 50 else question
)
metrics = result.get("metrics", {})
if metrics:
# Success case - format each metric, handling NaN values
faith = metrics.get("faithfulness", 0)
ans_rel = metrics.get("answer_relevance", 0)
ctx_rec = metrics.get("context_recall", 0)
ctx_prec = metrics.get("context_precision", 0)
ragas = result.get("ragas_score", 0)
status = ""
logger.info(
"%-4d | %-50s | %s | %s | %s | %s | %s | %6s",
test_num,
question_display,
self._format_metric(faith, 6),
self._format_metric(ans_rel, 7),
self._format_metric(ctx_rec, 6),
self._format_metric(ctx_prec, 7),
self._format_metric(ragas, 6),
status,
)
else:
# Error case
error = result.get("error", "Unknown error")
error_display = (error[:20] + "...") if len(error) > 23 else error
logger.info(
"%-4d | %-50s | %6s | %7s | %6s | %7s | %6s | ✗ %s",
test_num,
question_display,
"N/A",
"N/A",
"N/A",
"N/A",
"N/A",
error_display,
)
logger.info("%s", "=" * 115)
def _calculate_benchmark_stats(
self, results: List[Dict[str, Any]]
) -> Dict[str, Any]:
"""
Calculate benchmark statistics from evaluation results
Args:
results: List of evaluation results
Returns:
Dictionary with benchmark statistics
"""
# Filter out results with errors
valid_results = [r for r in results if r.get("metrics")]
total_tests = len(results)
successful_tests = len(valid_results)
failed_tests = total_tests - successful_tests
if not valid_results:
return {
"total_tests": total_tests,
"successful_tests": 0,
"failed_tests": failed_tests,
"success_rate": 0.0,
}
# Calculate averages for each metric (handling NaN values correctly)
# Track both sum and count for each metric to handle NaN values properly
metrics_data = {
"faithfulness": {"sum": 0.0, "count": 0},
"answer_relevance": {"sum": 0.0, "count": 0},
"context_recall": {"sum": 0.0, "count": 0},
"context_precision": {"sum": 0.0, "count": 0},
"ragas_score": {"sum": 0.0, "count": 0},
}
for result in valid_results:
metrics = result.get("metrics", {})
# For each metric, sum non-NaN values and count them
faithfulness = metrics.get("faithfulness", 0)
if not _is_nan(faithfulness):
metrics_data["faithfulness"]["sum"] += faithfulness
metrics_data["faithfulness"]["count"] += 1
answer_relevance = metrics.get("answer_relevance", 0)
if not _is_nan(answer_relevance):
metrics_data["answer_relevance"]["sum"] += answer_relevance
metrics_data["answer_relevance"]["count"] += 1
context_recall = metrics.get("context_recall", 0)
if not _is_nan(context_recall):
metrics_data["context_recall"]["sum"] += context_recall
metrics_data["context_recall"]["count"] += 1
context_precision = metrics.get("context_precision", 0)
if not _is_nan(context_precision):
metrics_data["context_precision"]["sum"] += context_precision
metrics_data["context_precision"]["count"] += 1
ragas_score = result.get("ragas_score", 0)
if not _is_nan(ragas_score):
metrics_data["ragas_score"]["sum"] += ragas_score
metrics_data["ragas_score"]["count"] += 1
# Calculate averages using actual counts for each metric
avg_metrics = {}
for metric_name, data in metrics_data.items():
if data["count"] > 0:
avg_val = data["sum"] / data["count"]
avg_metrics[metric_name] = (
round(avg_val, 4) if not _is_nan(avg_val) else 0.0
)
else:
avg_metrics[metric_name] = 0.0
# Find min and max RAGAS scores (filter out NaN)
ragas_scores = []
for r in valid_results:
score = r.get("ragas_score", 0)
if _is_nan(score):
continue # Skip NaN values
ragas_scores.append(score)
min_score = min(ragas_scores) if ragas_scores else 0
max_score = max(ragas_scores) if ragas_scores else 0
return {
"total_tests": total_tests,
"successful_tests": successful_tests,
"failed_tests": failed_tests,
"success_rate": round(successful_tests / total_tests * 100, 2),
"average_metrics": avg_metrics,
"min_ragas_score": round(min_score, 4),
"max_ragas_score": round(max_score, 4),
}
async def run(self) -> Dict[str, Any]: async def run(self) -> Dict[str, Any]:
"""Run complete evaluation pipeline""" """Run complete evaluation pipeline"""
@ -799,76 +330,35 @@ class RAGEvaluator:
elapsed_time = time.time() - start_time elapsed_time = time.time() - start_time
# Calculate benchmark statistics
benchmark_stats = self._calculate_benchmark_stats(results)
# Save results # Save results
summary = { summary = {
"timestamp": datetime.now().isoformat(), "timestamp": datetime.now().isoformat(),
"total_tests": len(results), "total_tests": len(results),
"elapsed_time_seconds": round(elapsed_time, 2), "elapsed_time_seconds": round(elapsed_time, 2),
"benchmark_stats": benchmark_stats,
"results": results, "results": results,
} }
# Save JSON results # Save JSON results
json_path = ( json_path = self.results_dir / f"results_{datetime.now().strftime('%Y%m%d_%H%M%S')}.json"
self.results_dir
/ f"results_{datetime.now().strftime('%Y%m%d_%H%M%S')}.json"
)
with open(json_path, "w") as f: with open(json_path, "w") as f:
json.dump(summary, f, indent=2) json.dump(summary, f, indent=2)
print(f"✅ JSON results saved to: {json_path}")
# Display results table
self._display_results_table(results)
logger.info("✅ JSON results saved to: %s", json_path)
# Export to CSV # Export to CSV
csv_path = self._export_to_csv(results) csv_path = self._export_to_csv(results)
logger.info("✅ CSV results saved to: %s", csv_path) print(f"✅ CSV results saved to: {csv_path}")
# Print summary # Print summary
logger.info("") print("\n" + "="*70)
logger.info("%s", "=" * 70) print("📊 EVALUATION COMPLETE")
logger.info("📊 EVALUATION COMPLETE") print("="*70)
logger.info("%s", "=" * 70) print(f"Total Tests: {len(results)}")
logger.info("Total Tests: %s", len(results)) print(f"Elapsed Time: {elapsed_time:.2f} seconds")
logger.info("Successful: %s", benchmark_stats["successful_tests"]) print(f"Results Dir: {self.results_dir.absolute()}")
logger.info("Failed: %s", benchmark_stats["failed_tests"]) print("\n📁 Generated Files:")
logger.info("Success Rate: %.2f%%", benchmark_stats["success_rate"]) print(f" • CSV: {csv_path.name}")
logger.info("Elapsed Time: %.2f seconds", elapsed_time) print(f" • JSON: {json_path.name}")
logger.info("Avg Time/Test: %.2f seconds", elapsed_time / len(results)) print("="*70 + "\n")
# Print benchmark metrics
logger.info("")
logger.info("%s", "=" * 70)
logger.info("📈 BENCHMARK RESULTS (Average)")
logger.info("%s", "=" * 70)
avg = benchmark_stats["average_metrics"]
logger.info("Average Faithfulness: %.4f", avg["faithfulness"])
logger.info("Average Answer Relevance: %.4f", avg["answer_relevance"])
logger.info("Average Context Recall: %.4f", avg["context_recall"])
logger.info("Average Context Precision: %.4f", avg["context_precision"])
logger.info("Average RAGAS Score: %.4f", avg["ragas_score"])
logger.info("")
logger.info(
"Min RAGAS Score: %.4f",
benchmark_stats["min_ragas_score"],
)
logger.info(
"Max RAGAS Score: %.4f",
benchmark_stats["max_ragas_score"],
)
logger.info("")
logger.info("%s", "=" * 70)
logger.info("📁 GENERATED FILES")
logger.info("%s", "=" * 70)
logger.info("Results Dir: %s", self.results_dir.absolute())
logger.info(" • CSV: %s", csv_path.name)
logger.info(" • JSON: %s", json_path.name)
logger.info("%s", "=" * 70)
return summary return summary
@ -877,64 +367,30 @@ async def main():
""" """
Main entry point for RAGAS evaluation Main entry point for RAGAS evaluation
Command-line arguments:
--dataset, -d: Path to test dataset JSON file (default: sample_dataset.json)
--ragendpoint, -r: LightRAG API endpoint URL (default: http://localhost:9621 or $LIGHTRAG_API_URL)
Usage: Usage:
python lightrag/evaluation/eval_rag_quality.py python lightrag/evaluation/eval_rag_quality.py
python lightrag/evaluation/eval_rag_quality.py --dataset my_test.json python lightrag/evaluation/eval_rag_quality.py http://localhost:8000
python lightrag/evaluation/eval_rag_quality.py -d my_test.json -r http://localhost:9621 python lightrag/evaluation/eval_rag_quality.py http://your-server.com:8000
""" """
try: try:
# Parse command-line arguments # Get RAG API URL from command line or environment
parser = argparse.ArgumentParser( rag_api_url = None
description="RAGAS Evaluation Script for LightRAG System", if len(sys.argv) > 1:
formatter_class=argparse.RawDescriptionHelpFormatter, rag_api_url = sys.argv[1]
epilog="""
Examples:
# Use defaults
python lightrag/evaluation/eval_rag_quality.py
# Specify custom dataset print("\n" + "="*70)
python lightrag/evaluation/eval_rag_quality.py --dataset my_test.json print("🔍 RAGAS Evaluation - Using Real LightRAG API")
print("="*70)
if rag_api_url:
print(f"📡 RAG API URL: {rag_api_url}")
else:
print("📡 RAG API URL: http://localhost:8000 (default)")
print("="*70 + "\n")
# Specify custom RAG endpoint evaluator = RAGEvaluator(rag_api_url=rag_api_url)
python lightrag/evaluation/eval_rag_quality.py --ragendpoint http://my-server.com:9621
# Specify both
python lightrag/evaluation/eval_rag_quality.py -d my_test.json -r http://localhost:9621
""",
)
parser.add_argument(
"--dataset",
"-d",
type=str,
default=None,
help="Path to test dataset JSON file (default: sample_dataset.json in evaluation directory)",
)
parser.add_argument(
"--ragendpoint",
"-r",
type=str,
default=None,
help="LightRAG API endpoint URL (default: http://localhost:9621 or $LIGHTRAG_API_URL environment variable)",
)
args = parser.parse_args()
logger.info("%s", "=" * 70)
logger.info("🔍 RAGAS Evaluation - Using Real LightRAG API")
logger.info("%s", "=" * 70)
evaluator = RAGEvaluator(
test_dataset_path=args.dataset, rag_api_url=args.ragendpoint
)
await evaluator.run() await evaluator.run()
except Exception as e: except Exception as e:
logger.exception("❌ Error: %s", e) print(f"\n❌ Error: {str(e)}\n")
sys.exit(1) sys.exit(1)

View file

@ -0,0 +1,44 @@
{
"test_cases": [
{
"question": "What is LightRAG and what problem does it solve?",
"ground_truth": "LightRAG is a Simple and Fast Retrieval-Augmented Generation framework developed by HKUDS. It solves the problem of efficiently combining large language models with external knowledge retrieval to provide accurate, contextual responses while reducing hallucinations.",
"context": "general_rag_knowledge"
},
{
"question": "What are the main components of a RAG system?",
"ground_truth": "A RAG system consists of three main components: 1) A retrieval system (vector database or search engine) to find relevant documents, 2) An embedding model to convert text into vector representations, and 3) A large language model (LLM) to generate responses based on retrieved context.",
"context": "rag_architecture"
},
{
"question": "How does LightRAG improve upon traditional RAG approaches?",
"ground_truth": "LightRAG improves upon traditional RAG by offering a simpler API, faster retrieval performance, better integration with various vector databases, and optimized prompting strategies. It focuses on ease of use while maintaining high quality results.",
"context": "lightrag_features"
},
{
"question": "What vector databases does LightRAG support?",
"ground_truth": "LightRAG supports multiple vector databases including ChromaDB, Neo4j, Milvus, Qdrant, MongoDB Atlas Vector Search, and Redis. It also includes a built-in nano-vectordb for simple deployments.",
"context": "supported_storage"
},
{
"question": "What are the key metrics for evaluating RAG system quality?",
"ground_truth": "Key RAG evaluation metrics include: 1) Faithfulness - whether answers are factually grounded in retrieved context, 2) Answer Relevance - how well answers address the question, 3) Context Recall - completeness of retrieval, and 4) Context Precision - quality and relevance of retrieved documents.",
"context": "rag_evaluation"
},
{
"question": "How can you deploy LightRAG in production?",
"ground_truth": "LightRAG can be deployed in production using Docker containers, as a REST API server with FastAPI, or integrated directly into Python applications. It supports environment-based configuration, multiple LLM providers, and can scale horizontally.",
"context": "deployment_options"
},
{
"question": "What LLM providers does LightRAG support?",
"ground_truth": "LightRAG supports multiple LLM providers including OpenAI (GPT-3.5, GPT-4), Anthropic Claude, Ollama for local models, Azure OpenAI, AWS Bedrock, and any OpenAI-compatible API endpoint.",
"context": "llm_integration"
},
{
"question": "What is the purpose of graph-based retrieval in RAG systems?",
"ground_truth": "Graph-based retrieval in RAG systems enables relationship-aware context retrieval. It stores entities and their relationships as a knowledge graph, allowing the system to understand connections between concepts and retrieve more contextually relevant information beyond simple semantic similarity.",
"context": "knowledge_graph_rag"
}
]
}