From d94aae9c5ed41389c98bf94b21aa926e14f50ebe Mon Sep 17 00:00:00 2001 From: Yasiru Rangana Date: Fri, 7 Nov 2025 09:55:06 +1100 Subject: [PATCH 01/62] Add dimensions parameter support to openai_embed() --- lightrag/llm/openai.py | 18 +++++++++++++++--- 1 file changed, 15 insertions(+), 3 deletions(-) diff --git a/lightrag/llm/openai.py b/lightrag/llm/openai.py index 66c3bfe4..155fd3e9 100644 --- a/lightrag/llm/openai.py +++ b/lightrag/llm/openai.py @@ -609,6 +609,7 @@ async def openai_embed( model: str = "text-embedding-3-small", base_url: str | None = None, api_key: str | None = None, + embedding_dim: int = None, client_configs: dict[str, Any] | None = None, token_tracker: Any | None = None, ) -> np.ndarray: @@ -619,6 +620,7 @@ async def openai_embed( model: The OpenAI embedding model to use. base_url: Optional base URL for the OpenAI API. api_key: Optional OpenAI API key. If None, uses the OPENAI_API_KEY environment variable. + embedding_dim: Optional embedding dimension. If None, uses the default embedding dimension for the model. (will be passed to API for dimension reduction). client_configs: Additional configuration options for the AsyncOpenAI client. These will override any default configurations but will be overridden by explicit parameters (api_key, base_url). @@ -638,9 +640,19 @@ async def openai_embed( ) async with openai_async_client: - response = await openai_async_client.embeddings.create( - model=model, input=texts, encoding_format="base64" - ) + # Prepare API call parameters + api_params = { + "model": model, + "input": texts, + "encoding_format": "base64", + } + + # Add dimensions parameter only if embedding_dim is provided + if embedding_dim is not None: + api_params["dimensions"] = embedding_dim + + # Make API call + response = await openai_async_client.embeddings.create(**api_params) if token_tracker and hasattr(response, "usage"): token_counts = { From 5c0ced6e4add2bd35f683667e3fc6534c4b8f639 Mon Sep 17 00:00:00 2001 From: domices <151828080+huangbhan@users.noreply.github.com> Date: Fri, 7 Nov 2025 17:48:41 +0800 Subject: [PATCH 02/62] =?UTF-8?q?Fix=20spelling=20errors=20in=20the=20"?= =?UTF-8?q?=E4=BD=BF=E7=94=A8PostgreSQL=E5=AD=98=E5=82=A8"=20section=20of?= =?UTF-8?q?=20README-zh.md?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- README-zh.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README-zh.md b/README-zh.md index 3032cdb6..148e7907 100644 --- a/README-zh.md +++ b/README-zh.md @@ -868,7 +868,7 @@ rag = LightRAG( 对于生产级场景，您很可能想要利用企业级解决方案。PostgreSQL可以为您提供一站式储解解决方案，作为KV存储、向量数据库（pgvector）和图数据库（apache AGE）。支持 PostgreSQL 版本为16.6或以上。 * 如果您是初学者并想避免麻烦，推荐使用docker，请从这个镜像开始（请务必阅读概述）：https://hub.docker.com/r/shangor/postgres-for-rag -* Apache AGE的性能不如Neo4j。最求高性能的图数据库请使用Noe4j。 +* Apache AGE的性能不如Neo4j。追求高性能的图数据库请使用Noe4j。 From 33a1482f7ff27e1992ac9fe05eb637312c7b8299 Mon Sep 17 00:00:00 2001 From: yangdx Date: Fri, 7 Nov 2025 20:46:40 +0800 Subject: [PATCH 03/62] Add optional embedding dimension parameter control via env var * Add EMBEDDING_SEND_DIM environment variable * Update Jina/OpenAI embed functions * Add send_dimensions to EmbeddingFunc * Auto-inject embedding_dim when enabled * Add parameter validation warnings --- env.example | 7 +++++ lightrag/api/lightrag_server.py | 49 +++++++++++++++++++++++++-------- lightrag/llm/jina.py | 13 ++++++--- lightrag/llm/openai.py | 9 ++++-- lightrag/utils.py | 16 +++++++++++ 5 files changed, 76 insertions(+), 18 deletions(-) diff --git a/env.example b/env.example index ce1eab0f..521021b8 100644 --- a/env.example +++ b/env.example @@ -241,6 +241,13 @@ OLLAMA_LLM_NUM_CTX=32768 ### EMBEDDING_BINDING_HOST: host only for Ollama, endpoint for other Embedding service ####################################################################################### # EMBEDDING_TIMEOUT=30 + +### Control whether to send embedding_dim parameter to embedding API +### Set to 'true' to enable dynamic dimension adjustment (only works for OpenAI and Jina) +### Set to 'false' (default) to disable sending dimension parameter +### Note: This is automatically ignored for backends that don't support dimension parameter +# EMBEDDING_SEND_DIM=false + EMBEDDING_BINDING=ollama EMBEDDING_MODEL=bge-m3:latest EMBEDDING_DIM=1024 diff --git a/lightrag/api/lightrag_server.py b/lightrag/api/lightrag_server.py index 70e17bb6..a66d5d3c 100644 --- a/lightrag/api/lightrag_server.py +++ b/lightrag/api/lightrag_server.py @@ -15,7 +15,6 @@ import logging.config import sys import uvicorn import pipmaster as pm -import inspect from fastapi.staticfiles import StaticFiles from fastapi.responses import RedirectResponse from pathlib import Path @@ -595,7 +594,7 @@ def create_app(args): return {} def create_optimized_embedding_function( - config_cache: LLMConfigCache, binding, model, host, api_key, dimensions, args + config_cache: LLMConfigCache, binding, model, host, api_key, args ): """ Create optimized embedding function with pre-processed configuration for applicable bindings. @@ -641,7 +640,7 @@ def create_app(args): from lightrag.llm.jina import jina_embed return await jina_embed( - texts, dimensions=dimensions, base_url=host, api_key=api_key + texts, base_url=host, api_key=api_key ) else: # openai and compatible from lightrag.llm.openai import openai_embed @@ -687,17 +686,43 @@ def create_app(args): ) # Create embedding function with optimized configuration + import inspect + + # Create the optimized embedding function + optimized_embedding_func = create_optimized_embedding_function( + config_cache=config_cache, + binding=args.embedding_binding, + model=args.embedding_model, + host=args.embedding_binding_host, + api_key=args.embedding_binding_api_key, + args=args, # Pass args object for fallback option generation + ) + + # Check environment variable for sending dimensions + embedding_send_dim = os.getenv("EMBEDDING_SEND_DIM", "false").lower() == "true" + + # Check if the function signature has embedding_dim parameter + # Note: Since optimized_embedding_func is an async function, inspect its signature + sig = inspect.signature(optimized_embedding_func) + has_embedding_dim_param = 'embedding_dim' in sig.parameters + + # Determine send_dimensions value + # Only send dimensions if both conditions are met: + # 1. EMBEDDING_SEND_DIM environment variable is true + # 2. The function has embedding_dim parameter + send_dimensions = embedding_send_dim and has_embedding_dim_param + + logger.info( + f"Embedding configuration: send_dimensions={send_dimensions} " + f"(env_var={embedding_send_dim}, has_param={has_embedding_dim_param}, " + f"binding={args.embedding_binding})" + ) + + # Create EmbeddingFunc with send_dimensions attribute embedding_func = EmbeddingFunc( embedding_dim=args.embedding_dim, - func=create_optimized_embedding_function( - config_cache=config_cache, - binding=args.embedding_binding, - model=args.embedding_model, - host=args.embedding_binding_host, - api_key=args.embedding_binding_api_key, - dimensions=args.embedding_dim, - args=args, # Pass args object for fallback option generation - ), + func=optimized_embedding_func, + send_dimensions=send_dimensions, ) # Configure rerank function based on args.rerank_bindingparameter diff --git a/lightrag/llm/jina.py b/lightrag/llm/jina.py index 5077ee25..70de5995 100644 --- a/lightrag/llm/jina.py +++ b/lightrag/llm/jina.py @@ -69,7 +69,7 @@ async def fetch_data(url, headers, data): ) async def jina_embed( texts: list[str], - dimensions: int = 2048, + embedding_dim: int = 2048, late_chunking: bool = False, base_url: str = None, api_key: str = None, @@ -78,7 +78,12 @@ async def jina_embed( Args: texts: List of texts to embed. - dimensions: The embedding dimensions (default: 2048 for jina-embeddings-v4). + embedding_dim: The embedding dimensions (default: 2048 for jina-embeddings-v4). + **IMPORTANT**: This parameter is automatically injected by the EmbeddingFunc wrapper. + Do NOT manually pass this parameter when calling the function directly. + The dimension is controlled by the @wrap_embedding_func_with_attrs decorator. + Manually passing a different value will trigger a warning and be ignored. + When provided (by EmbeddingFunc), it will be passed to the Jina API for dimension reduction. late_chunking: Whether to use late chunking. base_url: Optional base URL for the Jina API. api_key: Optional Jina API key. If None, uses the JINA_API_KEY environment variable. @@ -104,7 +109,7 @@ async def jina_embed( data = { "model": "jina-embeddings-v4", "task": "text-matching", - "dimensions": dimensions, + "dimensions": embedding_dim, "embedding_type": "base64", "input": texts, } @@ -114,7 +119,7 @@ async def jina_embed( data["late_chunking"] = late_chunking logger.debug( - f"Jina embedding request: {len(texts)} texts, dimensions: {dimensions}" + f"Jina embedding request: {len(texts)} texts, dimensions: {embedding_dim}" ) try: diff --git a/lightrag/llm/openai.py b/lightrag/llm/openai.py index 155fd3e9..fce33cac 100644 --- a/lightrag/llm/openai.py +++ b/lightrag/llm/openai.py @@ -609,7 +609,7 @@ async def openai_embed( model: str = "text-embedding-3-small", base_url: str | None = None, api_key: str | None = None, - embedding_dim: int = None, + embedding_dim: int | None = None, client_configs: dict[str, Any] | None = None, token_tracker: Any | None = None, ) -> np.ndarray: @@ -620,7 +620,12 @@ async def openai_embed( model: The OpenAI embedding model to use. base_url: Optional base URL for the OpenAI API. api_key: Optional OpenAI API key. If None, uses the OPENAI_API_KEY environment variable. - embedding_dim: Optional embedding dimension. If None, uses the default embedding dimension for the model. (will be passed to API for dimension reduction). + embedding_dim: Optional embedding dimension for dynamic dimension reduction. + **IMPORTANT**: This parameter is automatically injected by the EmbeddingFunc wrapper. + Do NOT manually pass this parameter when calling the function directly. + The dimension is controlled by the @wrap_embedding_func_with_attrs decorator. + Manually passing a different value will trigger a warning and be ignored. + When provided (by EmbeddingFunc), it will be passed to the OpenAI API for dimension reduction. client_configs: Additional configuration options for the AsyncOpenAI client. These will override any default configurations but will be overridden by explicit parameters (api_key, base_url). diff --git a/lightrag/utils.py b/lightrag/utils.py index 28559af5..9ac82b1c 100644 --- a/lightrag/utils.py +++ b/lightrag/utils.py @@ -353,8 +353,24 @@ class EmbeddingFunc: embedding_dim: int func: callable max_token_size: int | None = None # deprecated keep it for compatible only + send_dimensions: bool = False # Control whether to send embedding_dim to the function async def __call__(self, *args, **kwargs) -> np.ndarray: + # Only inject embedding_dim when send_dimensions is True + if self.send_dimensions: + # Check if user provided embedding_dim parameter + if 'embedding_dim' in kwargs: + user_provided_dim = kwargs['embedding_dim'] + # If user's value differs from class attribute, output warning + if user_provided_dim is not None and user_provided_dim != self.embedding_dim: + logger.warning( + f"Ignoring user-provided embedding_dim={user_provided_dim}, " + f"using declared embedding_dim={self.embedding_dim} from decorator" + ) + + # Inject embedding_dim from decorator + kwargs['embedding_dim'] = self.embedding_dim + return await self.func(*args, **kwargs) From c14f25b7f8e3a46e17c1815465b73fff0a090b40 Mon Sep 17 00:00:00 2001 From: yangdx Date: Fri, 7 Nov 2025 21:08:34 +0800 Subject: [PATCH 04/62] Add mandatory dimension parameter handling for Jina API compliance --- env.example | 7 ++++--- lightrag/api/lightrag_server.py | 36 ++++++++++++++++++--------------- lightrag/utils.py | 19 ++++++++++------- 3 files changed, 36 insertions(+), 26 deletions(-) diff --git a/env.example b/env.example index 84c1bbe7..534bd22a 100644 --- a/env.example +++ b/env.example @@ -244,9 +244,10 @@ OLLAMA_LLM_NUM_CTX=32768 # EMBEDDING_TIMEOUT=30 ### Control whether to send embedding_dim parameter to embedding API -### Set to 'true' to enable dynamic dimension adjustment (only works for OpenAI and Jina) -### Set to 'false' (default) to disable sending dimension parameter -### Note: This is automatically ignored for backends that don't support dimension parameter +### IMPORTANT: Jina ALWAYS sends dimension parameter (API requirement) - this setting is ignored for Jina +### For OpenAI: Set to 'true' to enable dynamic dimension adjustment +### For OpenAI: Set to 'false' (default) to disable sending dimension parameter +### Note: Automatically ignored for backends that don't support dimension parameter (e.g., Ollama) # EMBEDDING_SEND_DIM=false EMBEDDING_BINDING=ollama diff --git a/lightrag/api/lightrag_server.py b/lightrag/api/lightrag_server.py index d8bea386..f36d88df 100644 --- a/lightrag/api/lightrag_server.py +++ b/lightrag/api/lightrag_server.py @@ -643,9 +643,7 @@ def create_app(args): elif binding == "jina": from lightrag.llm.jina import jina_embed - return await jina_embed( - texts, base_url=host, api_key=api_key - ) + return await jina_embed(texts, base_url=host, api_key=api_key) else: # openai and compatible from lightrag.llm.openai import openai_embed @@ -691,7 +689,7 @@ def create_app(args): # Create embedding function with optimized configuration import inspect - + # Create the optimized embedding function optimized_embedding_func = create_optimized_embedding_function( config_cache=config_cache, @@ -701,27 +699,33 @@ def create_app(args): api_key=args.embedding_binding_api_key, args=args, # Pass args object for fallback option generation ) - + # Check environment variable for sending dimensions embedding_send_dim = os.getenv("EMBEDDING_SEND_DIM", "false").lower() == "true" - + # Check if the function signature has embedding_dim parameter # Note: Since optimized_embedding_func is an async function, inspect its signature sig = inspect.signature(optimized_embedding_func) - has_embedding_dim_param = 'embedding_dim' in sig.parameters - - # Determine send_dimensions value - # Only send dimensions if both conditions are met: - # 1. EMBEDDING_SEND_DIM environment variable is true - # 2. The function has embedding_dim parameter - send_dimensions = embedding_send_dim and has_embedding_dim_param - + has_embedding_dim_param = "embedding_dim" in sig.parameters + + # Determine send_dimensions value based on binding type + # Jina REQUIRES dimension parameter (forced to True) + # OpenAI and others: controlled by EMBEDDING_SEND_DIM environment variable + if args.embedding_binding == "jina": + # Jina API requires dimension parameter - always send it + send_dimensions = has_embedding_dim_param + dimension_control = "forced (Jina API requirement)" + else: + # For OpenAI and other bindings, respect EMBEDDING_SEND_DIM setting + send_dimensions = embedding_send_dim and has_embedding_dim_param + dimension_control = f"env_var={embedding_send_dim}" + logger.info( f"Embedding configuration: send_dimensions={send_dimensions} " - f"(env_var={embedding_send_dim}, has_param={has_embedding_dim_param}, " + f"({dimension_control}, has_param={has_embedding_dim_param}, " f"binding={args.embedding_binding})" ) - + # Create EmbeddingFunc with send_dimensions attribute embedding_func = EmbeddingFunc( embedding_dim=args.embedding_dim, diff --git a/lightrag/utils.py b/lightrag/utils.py index 9ac82b1c..460ede3c 100644 --- a/lightrag/utils.py +++ b/lightrag/utils.py @@ -353,24 +353,29 @@ class EmbeddingFunc: embedding_dim: int func: callable max_token_size: int | None = None # deprecated keep it for compatible only - send_dimensions: bool = False # Control whether to send embedding_dim to the function + send_dimensions: bool = ( + False # Control whether to send embedding_dim to the function + ) async def __call__(self, *args, **kwargs) -> np.ndarray: # Only inject embedding_dim when send_dimensions is True if self.send_dimensions: # Check if user provided embedding_dim parameter - if 'embedding_dim' in kwargs: - user_provided_dim = kwargs['embedding_dim'] + if "embedding_dim" in kwargs: + user_provided_dim = kwargs["embedding_dim"] # If user's value differs from class attribute, output warning - if user_provided_dim is not None and user_provided_dim != self.embedding_dim: + if ( + user_provided_dim is not None + and user_provided_dim != self.embedding_dim + ): logger.warning( f"Ignoring user-provided embedding_dim={user_provided_dim}, " f"using declared embedding_dim={self.embedding_dim} from decorator" ) - + # Inject embedding_dim from decorator - kwargs['embedding_dim'] = self.embedding_dim - + kwargs["embedding_dim"] = self.embedding_dim + return await self.func(*args, **kwargs) From ce28f30ca68a2e0469f14beb1b4d65a4633d211e Mon Sep 17 00:00:00 2001 From: yangdx Date: Fri, 7 Nov 2025 21:23:59 +0800 Subject: [PATCH 05/62] Add embedding_dim parameter support to embedding functions MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Pass embedding_dim to jina_embed call • Pass embedding_dim to openai_embed call --- lightrag/api/lightrag_server.py | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/lightrag/api/lightrag_server.py b/lightrag/api/lightrag_server.py index f36d88df..60fae05d 100644 --- a/lightrag/api/lightrag_server.py +++ b/lightrag/api/lightrag_server.py @@ -605,7 +605,7 @@ def create_app(args): Uses lazy imports for all bindings and avoids repeated configuration parsing. """ - async def optimized_embedding_function(texts): + async def optimized_embedding_function(texts, embedding_dim=None): try: if binding == "lollms": from lightrag.llm.lollms import lollms_embed @@ -643,12 +643,14 @@ def create_app(args): elif binding == "jina": from lightrag.llm.jina import jina_embed - return await jina_embed(texts, base_url=host, api_key=api_key) + return await jina_embed( + texts, embedding_dim=embedding_dim, base_url=host, api_key=api_key + ) else: # openai and compatible from lightrag.llm.openai import openai_embed return await openai_embed( - texts, model=model, base_url=host, api_key=api_key + texts, model=model, base_url=host, api_key=api_key, embedding_dim=embedding_dim ) except ImportError as e: raise Exception(f"Failed to import {binding} embedding: {e}") From d95efcb9ad641a05b3047be3ba75477405807e4b Mon Sep 17 00:00:00 2001 From: yangdx Date: Fri, 7 Nov 2025 21:27:54 +0800 Subject: [PATCH 06/62] Fix linting --- lightrag/api/lightrag_server.py | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/lightrag/api/lightrag_server.py b/lightrag/api/lightrag_server.py index 60fae05d..0ed20a28 100644 --- a/lightrag/api/lightrag_server.py +++ b/lightrag/api/lightrag_server.py @@ -644,13 +644,20 @@ def create_app(args): from lightrag.llm.jina import jina_embed return await jina_embed( - texts, embedding_dim=embedding_dim, base_url=host, api_key=api_key + texts, + embedding_dim=embedding_dim, + base_url=host, + api_key=api_key, ) else: # openai and compatible from lightrag.llm.openai import openai_embed return await openai_embed( - texts, model=model, base_url=host, api_key=api_key, embedding_dim=embedding_dim + texts, + model=model, + base_url=host, + api_key=api_key, + embedding_dim=embedding_dim, ) except ImportError as e: raise Exception(f"Failed to import {binding} embedding: {e}") From 01b07b2be57446609c441045c5fa9ba04fef8703 Mon Sep 17 00:00:00 2001 From: yangdx Date: Fri, 7 Nov 2025 22:04:34 +0800 Subject: [PATCH 07/62] Refactor Jina embedding dimension by changing param to optional with default --- lightrag/llm/jina.py | 17 +++++++++++++---- 1 file changed, 13 insertions(+), 4 deletions(-) diff --git a/lightrag/llm/jina.py b/lightrag/llm/jina.py index 70de5995..f3c89228 100644 --- a/lightrag/llm/jina.py +++ b/lightrag/llm/jina.py @@ -1,4 +1,6 @@ import os +from typing import Final + import pipmaster as pm # Pipmaster for dynamic library install # install specific modules @@ -19,6 +21,9 @@ from tenacity import ( from lightrag.utils import wrap_embedding_func_with_attrs, logger +DEFAULT_JINA_EMBED_DIM: Final[int] = 2048 + + async def fetch_data(url, headers, data): async with aiohttp.ClientSession() as session: async with session.post(url, headers=headers, json=data) as response: @@ -58,7 +63,7 @@ async def fetch_data(url, headers, data): return data_list -@wrap_embedding_func_with_attrs(embedding_dim=2048) +@wrap_embedding_func_with_attrs(embedding_dim=DEFAULT_JINA_EMBED_DIM) @retry( stop=stop_after_attempt(3), wait=wait_exponential(multiplier=1, min=4, max=60), @@ -69,7 +74,7 @@ async def fetch_data(url, headers, data): ) async def jina_embed( texts: list[str], - embedding_dim: int = 2048, + embedding_dim: int | None = DEFAULT_JINA_EMBED_DIM, late_chunking: bool = False, base_url: str = None, api_key: str = None, @@ -95,6 +100,10 @@ async def jina_embed( aiohttp.ClientError: If there is a connection error with the Jina API. aiohttp.ClientResponseError: If the Jina API returns an error response. """ + resolved_embedding_dim = ( + embedding_dim if embedding_dim is not None else DEFAULT_JINA_EMBED_DIM + ) + if api_key: os.environ["JINA_API_KEY"] = api_key @@ -109,7 +118,7 @@ async def jina_embed( data = { "model": "jina-embeddings-v4", "task": "text-matching", - "dimensions": embedding_dim, + "dimensions": resolved_embedding_dim, "embedding_type": "base64", "input": texts, } @@ -119,7 +128,7 @@ async def jina_embed( data["late_chunking"] = late_chunking logger.debug( - f"Jina embedding request: {len(texts)} texts, dimensions: {embedding_dim}" + f"Jina embedding request: {len(texts)} texts, dimensions: {resolved_embedding_dim}" ) try: From ffeeae42080e806c51fc385c8f13f9da49e6ad4e Mon Sep 17 00:00:00 2001 From: yangdx Date: Fri, 7 Nov 2025 22:09:57 +0800 Subject: [PATCH 08/62] refactor: simplify jina embedding dimension handling --- lightrag/llm/jina.py | 17 ++++------------- 1 file changed, 4 insertions(+), 13 deletions(-) diff --git a/lightrag/llm/jina.py b/lightrag/llm/jina.py index f3c89228..70de5995 100644 --- a/lightrag/llm/jina.py +++ b/lightrag/llm/jina.py @@ -1,6 +1,4 @@ import os -from typing import Final - import pipmaster as pm # Pipmaster for dynamic library install # install specific modules @@ -21,9 +19,6 @@ from tenacity import ( from lightrag.utils import wrap_embedding_func_with_attrs, logger -DEFAULT_JINA_EMBED_DIM: Final[int] = 2048 - - async def fetch_data(url, headers, data): async with aiohttp.ClientSession() as session: async with session.post(url, headers=headers, json=data) as response: @@ -63,7 +58,7 @@ async def fetch_data(url, headers, data): return data_list -@wrap_embedding_func_with_attrs(embedding_dim=DEFAULT_JINA_EMBED_DIM) +@wrap_embedding_func_with_attrs(embedding_dim=2048) @retry( stop=stop_after_attempt(3), wait=wait_exponential(multiplier=1, min=4, max=60), @@ -74,7 +69,7 @@ async def fetch_data(url, headers, data): ) async def jina_embed( texts: list[str], - embedding_dim: int | None = DEFAULT_JINA_EMBED_DIM, + embedding_dim: int = 2048, late_chunking: bool = False, base_url: str = None, api_key: str = None, @@ -100,10 +95,6 @@ async def jina_embed( aiohttp.ClientError: If there is a connection error with the Jina API. aiohttp.ClientResponseError: If the Jina API returns an error response. """ - resolved_embedding_dim = ( - embedding_dim if embedding_dim is not None else DEFAULT_JINA_EMBED_DIM - ) - if api_key: os.environ["JINA_API_KEY"] = api_key @@ -118,7 +109,7 @@ async def jina_embed( data = { "model": "jina-embeddings-v4", "task": "text-matching", - "dimensions": resolved_embedding_dim, + "dimensions": embedding_dim, "embedding_type": "base64", "input": texts, } @@ -128,7 +119,7 @@ async def jina_embed( data["late_chunking"] = late_chunking logger.debug( - f"Jina embedding request: {len(texts)} texts, dimensions: {resolved_embedding_dim}" + f"Jina embedding request: {len(texts)} texts, dimensions: {embedding_dim}" ) try: From 03cc6262c4531260ac1425f5142b01afe0bcea63 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 01:43:36 +0800 Subject: [PATCH 09/62] Prohibit direct access to internal functions of EmbeddingFunc. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Fix similarity search error in query stage • Remove redundant null checks • Improve log readability --- lightrag/api/lightrag_server.py | 11 ++++--- lightrag/operate.py | 57 +++++++++++++++------------------ 2 files changed, 32 insertions(+), 36 deletions(-) diff --git a/lightrag/api/lightrag_server.py b/lightrag/api/lightrag_server.py index 0ed20a28..6da76f37 100644 --- a/lightrag/api/lightrag_server.py +++ b/lightrag/api/lightrag_server.py @@ -723,15 +723,18 @@ def create_app(args): if args.embedding_binding == "jina": # Jina API requires dimension parameter - always send it send_dimensions = has_embedding_dim_param - dimension_control = "forced (Jina API requirement)" + dimension_control = "forced by Jina API" else: # For OpenAI and other bindings, respect EMBEDDING_SEND_DIM setting send_dimensions = embedding_send_dim and has_embedding_dim_param - dimension_control = f"env_var={embedding_send_dim}" + if send_dimensions or not embedding_send_dim: + dimension_control = "by env var" + else: + dimension_control = "by not hasparam" logger.info( - f"Embedding configuration: send_dimensions={send_dimensions} " - f"({dimension_control}, has_param={has_embedding_dim_param}, " + f"Send embedding dimension: {send_dimensions} {dimension_control} " + f"(dimensions={args.embedding_dim}, has_param={has_embedding_dim_param}, " f"binding={args.embedding_binding})" ) diff --git a/lightrag/operate.py b/lightrag/operate.py index 5018ae0d..ae2be49e 100644 --- a/lightrag/operate.py +++ b/lightrag/operate.py @@ -3425,10 +3425,10 @@ async def _perform_kg_search( ) query_embedding = None if query and (kg_chunk_pick_method == "VECTOR" or chunks_vdb): - embedding_func_config = text_chunks_db.embedding_func - if embedding_func_config and embedding_func_config.func: + actual_embedding_func = text_chunks_db.embedding_func + if actual_embedding_func: try: - query_embedding = await embedding_func_config.func([query]) + query_embedding = await actual_embedding_func([query]) query_embedding = query_embedding[ 0 ] # Extract first embedding from batch result @@ -4336,25 +4336,21 @@ async def _find_related_text_unit_from_entities( num_of_chunks = int(max_related_chunks * len(entities_with_chunks) / 2) # Get embedding function from global config - embedding_func_config = text_chunks_db.embedding_func - if not embedding_func_config: + actual_embedding_func = text_chunks_db.embedding_func + if not actual_embedding_func: logger.warning("No embedding function found, falling back to WEIGHT method") kg_chunk_pick_method = "WEIGHT" else: try: - actual_embedding_func = embedding_func_config.func - - selected_chunk_ids = None - if actual_embedding_func: - selected_chunk_ids = await pick_by_vector_similarity( - query=query, - text_chunks_storage=text_chunks_db, - chunks_vdb=chunks_vdb, - num_of_chunks=num_of_chunks, - entity_info=entities_with_chunks, - embedding_func=actual_embedding_func, - query_embedding=query_embedding, - ) + selected_chunk_ids = await pick_by_vector_similarity( + query=query, + text_chunks_storage=text_chunks_db, + chunks_vdb=chunks_vdb, + num_of_chunks=num_of_chunks, + entity_info=entities_with_chunks, + embedding_func=actual_embedding_func, + query_embedding=query_embedding, + ) if selected_chunk_ids == []: kg_chunk_pick_method = "WEIGHT" @@ -4629,24 +4625,21 @@ async def _find_related_text_unit_from_relations( num_of_chunks = int(max_related_chunks * len(relations_with_chunks) / 2) # Get embedding function from global config - embedding_func_config = text_chunks_db.embedding_func - if not embedding_func_config: + actual_embedding_func = text_chunks_db.embedding_func + if not actual_embedding_func: logger.warning("No embedding function found, falling back to WEIGHT method") kg_chunk_pick_method = "WEIGHT" else: try: - actual_embedding_func = embedding_func_config.func - - if actual_embedding_func: - selected_chunk_ids = await pick_by_vector_similarity( - query=query, - text_chunks_storage=text_chunks_db, - chunks_vdb=chunks_vdb, - num_of_chunks=num_of_chunks, - entity_info=relations_with_chunks, - embedding_func=actual_embedding_func, - query_embedding=query_embedding, - ) + selected_chunk_ids = await pick_by_vector_similarity( + query=query, + text_chunks_storage=text_chunks_db, + chunks_vdb=chunks_vdb, + num_of_chunks=num_of_chunks, + entity_info=relations_with_chunks, + embedding_func=actual_embedding_func, + query_embedding=query_embedding, + ) if selected_chunk_ids == []: kg_chunk_pick_method = "WEIGHT" From 0b2a15c452689166c39e617b67043d1c0785cb97 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 01:52:23 +0800 Subject: [PATCH 10/62] Centralize embedding_send_dim config through args instead of env var --- lightrag/api/config.py | 1 + lightrag/api/lightrag_server.py | 4 ++-- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/lightrag/api/config.py b/lightrag/api/config.py index 92e81253..baaf9c52 100644 --- a/lightrag/api/config.py +++ b/lightrag/api/config.py @@ -343,6 +343,7 @@ def parse_args() -> argparse.Namespace: args.llm_model = get_env_value("LLM_MODEL", "mistral-nemo:latest") args.embedding_model = get_env_value("EMBEDDING_MODEL", "bge-m3:latest") args.embedding_dim = get_env_value("EMBEDDING_DIM", 1024, int) + args.embedding_send_dim = get_env_value("EMBEDDING_SEND_DIM", False, bool) # Inject chunk configuration args.chunk_size = get_env_value("CHUNK_SIZE", 1200, int) diff --git a/lightrag/api/lightrag_server.py b/lightrag/api/lightrag_server.py index 6da76f37..b3a439e8 100644 --- a/lightrag/api/lightrag_server.py +++ b/lightrag/api/lightrag_server.py @@ -709,8 +709,8 @@ def create_app(args): args=args, # Pass args object for fallback option generation ) - # Check environment variable for sending dimensions - embedding_send_dim = os.getenv("EMBEDDING_SEND_DIM", "false").lower() == "true" + # Get embedding_send_dim from centralized configuration + embedding_send_dim = args.embedding_send_dim # Check if the function signature has embedding_dim parameter # Note: Since optimized_embedding_func is an async function, inspect its signature From f83ea3394e807630071648f91f0f71c00339187d Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 02:07:31 +0800 Subject: [PATCH 11/62] Add section header comment for Gemini binding options --- lightrag/llm/binding_options.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/lightrag/llm/binding_options.py b/lightrag/llm/binding_options.py index b3affb37..8f69711a 100644 --- a/lightrag/llm/binding_options.py +++ b/lightrag/llm/binding_options.py @@ -472,6 +472,9 @@ class OllamaLLMOptions(_OllamaOptionsMixin, BindingOptions): _binding_name: ClassVar[str] = "ollama_llm" +# ============================================================================= +# Binding Options for Gemini +# ============================================================================= @dataclass class GeminiLLMOptions(BindingOptions): """Options for Google Gemini models.""" From de4ed7365203de7a756493b82b609b4c193e8b52 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 03:34:30 +0800 Subject: [PATCH 12/62] Add Gemini embedding support - Implement gemini_embed function - Add gemini to embedding binding choices - Add L2 normalization for dims < 3072 --- lightrag/api/config.py | 26 ++++-- lightrag/api/lightrag_server.py | 39 +++++++++ lightrag/llm/binding_options.py | 13 +++ lightrag/llm/gemini.py | 144 +++++++++++++++++++++++++++++++- 4 files changed, 216 insertions(+), 6 deletions(-) diff --git a/lightrag/api/config.py b/lightrag/api/config.py index baaf9c52..1f46d147 100644 --- a/lightrag/api/config.py +++ b/lightrag/api/config.py @@ -8,6 +8,7 @@ import logging from dotenv import load_dotenv from lightrag.utils import get_env_value from lightrag.llm.binding_options import ( + GeminiEmbeddingOptions, GeminiLLMOptions, OllamaEmbeddingOptions, OllamaLLMOptions, @@ -238,7 +239,15 @@ def parse_args() -> argparse.Namespace: "--embedding-binding", type=str, default=get_env_value("EMBEDDING_BINDING", "ollama"), - choices=["lollms", "ollama", "openai", "azure_openai", "aws_bedrock", "jina"], + choices=[ + "lollms", + "ollama", + "openai", + "azure_openai", + "aws_bedrock", + "jina", + "gemini", + ], help="Embedding binding type (default: from env or ollama)", ) parser.add_argument( @@ -265,12 +274,19 @@ def parse_args() -> argparse.Namespace: if "--embedding-binding" in sys.argv: try: idx = sys.argv.index("--embedding-binding") - if idx + 1 < len(sys.argv) and sys.argv[idx + 1] == "ollama": - OllamaEmbeddingOptions.add_args(parser) + if idx + 1 < len(sys.argv): + if sys.argv[idx + 1] == "ollama": + OllamaEmbeddingOptions.add_args(parser) + elif sys.argv[idx + 1] == "gemini": + GeminiEmbeddingOptions.add_args(parser) except IndexError: pass - elif os.environ.get("EMBEDDING_BINDING") == "ollama": - OllamaEmbeddingOptions.add_args(parser) + else: + env_embedding_binding = os.environ.get("EMBEDDING_BINDING") + if env_embedding_binding == "ollama": + OllamaEmbeddingOptions.add_args(parser) + elif env_embedding_binding == "gemini": + GeminiEmbeddingOptions.add_args(parser) # Add OpenAI LLM options when llm-binding is openai or azure_openai if "--llm-binding" in sys.argv: diff --git a/lightrag/api/lightrag_server.py b/lightrag/api/lightrag_server.py index b3a439e8..7a291018 100644 --- a/lightrag/api/lightrag_server.py +++ b/lightrag/api/lightrag_server.py @@ -89,6 +89,7 @@ class LLMConfigCache: # Initialize configurations based on binding conditions self.openai_llm_options = None self.gemini_llm_options = None + self.gemini_embedding_options = None self.ollama_llm_options = None self.ollama_embedding_options = None @@ -135,6 +136,23 @@ class LLMConfigCache: ) self.ollama_embedding_options = {} + # Only initialize and log Gemini Embedding options when using Gemini Embedding binding + if args.embedding_binding == "gemini": + try: + from lightrag.llm.binding_options import GeminiEmbeddingOptions + + self.gemini_embedding_options = GeminiEmbeddingOptions.options_dict( + args + ) + logger.info( + f"Gemini Embedding Options: {self.gemini_embedding_options}" + ) + except ImportError: + logger.warning( + "GeminiEmbeddingOptions not available, using default configuration" + ) + self.gemini_embedding_options = {} + def check_frontend_build(): """Check if frontend is built and optionally check if source is up-to-date @@ -296,6 +314,7 @@ def create_app(args): "azure_openai", "aws_bedrock", "jina", + "gemini", ]: raise Exception("embedding binding not supported") @@ -649,6 +668,26 @@ def create_app(args): base_url=host, api_key=api_key, ) + elif binding == "gemini": + from lightrag.llm.gemini import gemini_embed + + # Use pre-processed configuration if available, otherwise fallback to dynamic parsing + if config_cache.gemini_embedding_options is not None: + gemini_options = config_cache.gemini_embedding_options + else: + # Fallback for cases where config cache wasn't initialized properly + from lightrag.llm.binding_options import GeminiEmbeddingOptions + + gemini_options = GeminiEmbeddingOptions.options_dict(args) + + return await gemini_embed( + texts, + model=model, + base_url=host, + api_key=api_key, + embedding_dim=embedding_dim, + task_type=gemini_options.get("task_type", "RETRIEVAL_DOCUMENT"), + ) else: # openai and compatible from lightrag.llm.openai import openai_embed diff --git a/lightrag/llm/binding_options.py b/lightrag/llm/binding_options.py index 8f69711a..1cb52a81 100644 --- a/lightrag/llm/binding_options.py +++ b/lightrag/llm/binding_options.py @@ -508,6 +508,19 @@ class GeminiLLMOptions(BindingOptions): } +@dataclass +class GeminiEmbeddingOptions(BindingOptions): + """Options for Google Gemini embedding models.""" + + _binding_name: ClassVar[str] = "gemini_embedding" + + task_type: str = "RETRIEVAL_DOCUMENT" + + _help: ClassVar[dict[str, str]] = { + "task_type": "Task type for embedding optimization (RETRIEVAL_DOCUMENT, RETRIEVAL_QUERY, SEMANTIC_SIMILARITY, CLASSIFICATION, CLUSTERING, CODE_RETRIEVAL_QUERY, QUESTION_ANSWERING, FACT_VERIFICATION)", + } + + # ============================================================================= # Binding Options for OpenAI # ============================================================================= diff --git a/lightrag/llm/gemini.py b/lightrag/llm/gemini.py index f06ec6b3..3954e814 100644 --- a/lightrag/llm/gemini.py +++ b/lightrag/llm/gemini.py @@ -16,7 +16,20 @@ from collections.abc import AsyncIterator from functools import lru_cache from typing import Any -from lightrag.utils import logger, remove_think_tags, safe_unicode_decode +import numpy as np +from tenacity import ( + retry, + stop_after_attempt, + wait_exponential, + retry_if_exception_type, +) + +from lightrag.utils import ( + logger, + remove_think_tags, + safe_unicode_decode, + wrap_embedding_func_with_attrs, +) import pipmaster as pm @@ -416,7 +429,136 @@ async def gemini_model_complete( ) +@wrap_embedding_func_with_attrs(embedding_dim=1536) +@retry( + stop=stop_after_attempt(3), + wait=wait_exponential(multiplier=1, min=4, max=60), + retry=( + retry_if_exception_type(Exception) # Gemini uses generic exceptions + ), +) +async def gemini_embed( + texts: list[str], + model: str = "gemini-embedding-001", + base_url: str | None = None, + api_key: str | None = None, + embedding_dim: int | None = None, + task_type: str = "RETRIEVAL_DOCUMENT", + timeout: int | None = None, + token_tracker: Any | None = None, +) -> np.ndarray: + """Generate embeddings for a list of texts using Gemini's API. + + This function uses Google's Gemini embedding model to generate text embeddings. + It supports dynamic dimension control and automatic normalization for dimensions + less than 3072. + + Args: + texts: List of texts to embed. + model: The Gemini embedding model to use. Default is "gemini-embedding-001". + base_url: Optional custom API endpoint. + api_key: Optional Gemini API key. If None, uses environment variables. + embedding_dim: Optional embedding dimension for dynamic dimension reduction. + **IMPORTANT**: This parameter is automatically injected by the EmbeddingFunc wrapper. + Do NOT manually pass this parameter when calling the function directly. + The dimension is controlled by the @wrap_embedding_func_with_attrs decorator + or the EMBEDDING_DIM environment variable. + Supported range: 128-3072. Recommended values: 768, 1536, 3072. + task_type: Task type for embedding optimization. Default is "RETRIEVAL_DOCUMENT". + Supported types: SEMANTIC_SIMILARITY, CLASSIFICATION, CLUSTERING, + RETRIEVAL_DOCUMENT, RETRIEVAL_QUERY, CODE_RETRIEVAL_QUERY, + QUESTION_ANSWERING, FACT_VERIFICATION. + timeout: Request timeout in seconds (will be converted to milliseconds for Gemini API). + token_tracker: Optional token usage tracker for monitoring API usage. + + Returns: + A numpy array of embeddings, one per input text. For dimensions < 3072, + the embeddings are L2-normalized to ensure optimal semantic similarity performance. + + Raises: + ValueError: If API key is not provided or configured. + RuntimeError: If the response from Gemini is invalid or empty. + + Note: + - For dimension 3072: Embeddings are already normalized by the API + - For dimensions < 3072: Embeddings are L2-normalized after retrieval + - Normalization ensures accurate semantic similarity via cosine distance + """ + loop = asyncio.get_running_loop() + + key = _ensure_api_key(api_key) + # Convert timeout from seconds to milliseconds for Gemini API + timeout_ms = timeout * 1000 if timeout else None + client = _get_gemini_client(key, base_url, timeout_ms) + + # Prepare embedding configuration + config_kwargs: dict[str, Any] = {} + + # Add task_type to config + if task_type: + config_kwargs["task_type"] = task_type + + # Add output_dimensionality if embedding_dim is provided + if embedding_dim is not None: + config_kwargs["output_dimensionality"] = embedding_dim + + # Create config object if we have parameters + config_obj = types.EmbedContentConfig(**config_kwargs) if config_kwargs else None + + def _call_embed() -> Any: + """Call Gemini embedding API in executor thread.""" + request_kwargs: dict[str, Any] = { + "model": model, + "contents": texts, + } + if config_obj is not None: + request_kwargs["config"] = config_obj + + return client.models.embed_content(**request_kwargs) + + # Execute API call in thread pool + response = await loop.run_in_executor(None, _call_embed) + + # Extract embeddings from response + if not hasattr(response, "embeddings") or not response.embeddings: + raise RuntimeError("Gemini response did not contain embeddings.") + + # Convert embeddings to numpy array + embeddings = np.array( + [np.array(e.values, dtype=np.float32) for e in response.embeddings] + ) + + # Apply L2 normalization for dimensions < 3072 + # The 3072 dimension embedding is already normalized by Gemini API + if embedding_dim and embedding_dim < 3072: + # Normalize each embedding vector to unit length + norms = np.linalg.norm(embeddings, axis=1, keepdims=True) + # Avoid division by zero + norms = np.where(norms == 0, 1, norms) + embeddings = embeddings / norms + logger.debug( + f"Applied L2 normalization to {len(embeddings)} embeddings of dimension {embedding_dim}" + ) + + # Track token usage if tracker is provided + # Note: Gemini embedding API may not provide usage metadata + if token_tracker and hasattr(response, "usage_metadata"): + usage = response.usage_metadata + token_counts = { + "prompt_tokens": getattr(usage, "prompt_token_count", 0), + "total_tokens": getattr(usage, "total_token_count", 0), + } + token_tracker.add_usage(token_counts) + + logger.debug( + f"Generated {len(embeddings)} Gemini embeddings with dimension {embeddings.shape[1]}" + ) + + return embeddings + + __all__ = [ "gemini_complete_if_cache", "gemini_model_complete", + "gemini_embed", ] From a624a9508af9a2af164b11ceec397d2f64f4e0b9 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 03:54:50 +0800 Subject: [PATCH 13/62] Add Gemini to APIs requiring embedding dimension parameter --- lightrag/api/lightrag_server.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/lightrag/api/lightrag_server.py b/lightrag/api/lightrag_server.py index 7a291018..ded70d67 100644 --- a/lightrag/api/lightrag_server.py +++ b/lightrag/api/lightrag_server.py @@ -757,12 +757,12 @@ def create_app(args): has_embedding_dim_param = "embedding_dim" in sig.parameters # Determine send_dimensions value based on binding type - # Jina REQUIRES dimension parameter (forced to True) + # Jina and Gemini REQUIRE dimension parameter (forced to True) # OpenAI and others: controlled by EMBEDDING_SEND_DIM environment variable - if args.embedding_binding == "jina": - # Jina API requires dimension parameter - always send it + if args.embedding_binding in ["jina", "gemini"]: + # Jina and Gemini APIs require dimension parameter - always send it send_dimensions = has_embedding_dim_param - dimension_control = "forced by Jina API" + dimension_control = f"forced by {args.embedding_binding.title()} API" else: # For OpenAI and other bindings, respect EMBEDDING_SEND_DIM setting send_dimensions = embedding_send_dim and has_embedding_dim_param From cf732dbfc66edf19700199058c2dabbea823776b Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 11:27:26 +0800 Subject: [PATCH 14/62] Bump core version to 1.4.9.9 and API to 0252 --- lightrag/__init__.py | 2 +- lightrag/api/__init__.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/lightrag/__init__.py b/lightrag/__init__.py index 70a71899..dc7c97b0 100644 --- a/lightrag/__init__.py +++ b/lightrag/__init__.py @@ -1,5 +1,5 @@ from .lightrag import LightRAG as LightRAG, QueryParam as QueryParam -__version__ = "1.4.9.8" +__version__ = "1.4.9.9" __author__ = "Zirui Guo" __url__ = "https://github.com/HKUDS/LightRAG" diff --git a/lightrag/api/__init__.py b/lightrag/api/__init__.py index 1623b064..02b01dcc 100644 --- a/lightrag/api/__init__.py +++ b/lightrag/api/__init__.py @@ -1 +1 @@ -__api_version__ = "0251" +__api_version__ = "0252" From 55274dde597fe2a4adab5f1b2cd6ad865f4a2e78 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 17:57:22 +0800 Subject: [PATCH 15/62] Add LLM cache migration tool for KV storage backends - Supports JSON/Redis/PostgreSQL/MongoDB - Batch migration with error tracking - Workspace-aware data transfer - Memory-efficient pagination - Comprehensive migration reporting --- tools/README_MIGRATE_LLM_CACHE.md | 401 +++++++++++++++++ tools/migrate_llm_cache.py | 721 ++++++++++++++++++++++++++++++ 2 files changed, 1122 insertions(+) create mode 100644 tools/README_MIGRATE_LLM_CACHE.md create mode 100644 tools/migrate_llm_cache.py diff --git a/tools/README_MIGRATE_LLM_CACHE.md b/tools/README_MIGRATE_LLM_CACHE.md new file mode 100644 index 00000000..edd49acd --- /dev/null +++ b/tools/README_MIGRATE_LLM_CACHE.md @@ -0,0 +1,401 @@ +# LLM Cache Migration Tool - User Guide + +## Overview + +This tool migrates LightRAG's LLM response cache between different KV storage implementations. It specifically migrates caches generated during file extraction (mode `default`), including entity extraction and summary caches. + +## Supported Storage Types + +1. **JsonKVStorage** - File-based JSON storage +2. **RedisKVStorage** - Redis database storage +3. **PGKVStorage** - PostgreSQL database storage +4. **MongoKVStorage** - MongoDB database storage + +## Cache Types + +The tool migrates the following cache types: +- `default:extract:*` - Entity and relationship extraction caches +- `default:summary:*` - Entity and relationship summary caches + +**Note**: Query caches (modes like `local`, `global`, etc.) are NOT migrated. + +## Prerequisites + +### 1. Environment Variable Configuration + +Ensure the relevant storage environment variables are configured in your `.env` file: + +#### Workspace Configuration (Optional) +```bash +# Generic workspace (shared by all storages) +WORKSPACE=space1 + +# Or configure independent workspace for specific storage +POSTGRES_WORKSPACE=pg_space +MONGODB_WORKSPACE=mongo_space +REDIS_WORKSPACE=redis_space +``` + +**Workspace Priority**: Storage-specific > Generic WORKSPACE > Empty string + +#### JsonKVStorage +```bash +WORKING_DIR=./rag_storage +``` + +#### RedisKVStorage +```bash +REDIS_URI=redis://localhost:6379 +``` + +#### PGKVStorage +```bash +POSTGRES_HOST=localhost +POSTGRES_PORT=5432 +POSTGRES_USER=your_username +POSTGRES_PASSWORD=your_password +POSTGRES_DATABASE=your_database +``` + +#### MongoKVStorage +```bash +MONGO_URI=mongodb://root:root@localhost:27017/ +MONGO_DATABASE=LightRAG +``` + +### 2. Install Dependencies + +Ensure LightRAG and its dependencies are installed: + +```bash +pip install -r requirements.txt +``` + +## Usage + +### Basic Usage + +Run from the LightRAG project root directory: + +```bash +python tools/migrate_llm_cache.py +``` + +### Interactive Workflow + +The tool guides you through the following steps: + +#### 1. Select Source Storage Type +``` +Supported KV Storage Types: +[1] JsonKVStorage +[2] RedisKVStorage +[3] PGKVStorage +[4] MongoKVStorage + +Select Source storage type (1-4): 1 +``` + +#### 2. Source Storage Validation +The tool will: +- Check required environment variables +- Auto-detect workspace configuration +- Initialize and connect to storage +- Count cache records available for migration + +``` +Checking environment variables... +✓ All required environment variables are set + +Initializing Source storage... +- Storage Type: JsonKVStorage +- Workspace: space1 +- Connection Status: ✓ Success + +Counting cache records... +- default:extract: 8,500 records +- default:summary: 234 records +- Total: 8,734 records +``` + +#### 3. Select Target Storage Type + +Repeat steps 1-2 to select and validate the target storage. + +#### 4. Confirm Migration + +Review the migration summary and confirm: + +``` +Migration Confirmation +================================================== +Source: JsonKVStorage (workspace: space1) - 8,734 records +Target: MongoKVStorage (workspace: space1) - 0 records +Batch Size: 1,000 records/batch + +⚠ Warning: Target storage already has 0 records +Migration will overwrite records with the same keys + +Continue? (y/n): y +``` + +#### 5. Execute Migration + +Observe migration progress: + +``` +=== Starting Migration === +Batch 1/9: ████████░░ 1000/8734 (11%) - default:extract +Batch 2/9: ████████████████░░ 2000/8734 (23%) - default:extract +... +Batch 9/9: ████████████████████ 8734/8734 (100%) - default:summary + +Persisting data to disk... +``` + +#### 6. Review Migration Report + +The tool provides a comprehensive final report showing statistics and any errors encountered: + +**Successful Migration:** +``` +Migration Complete - Final Report + +📊 Statistics: + Total source records: 8,734 + Total batches: 9 + Successful batches: 9 + Failed batches: 0 + Successfully migrated: 8,734 + Failed to migrate: 0 + Success rate: 100.00% + +✓ SUCCESS: All records migrated successfully! +``` + +**Migration with Errors:** +``` +Migration Complete - Final Report + +📊 Statistics: + Total source records: 8,734 + Total batches: 9 + Successful batches: 8 + Failed batches: 1 + Successfully migrated: 7,734 + Failed to migrate: 1,000 + Success rate: 88.55% + +⚠️ Errors encountered: 1 + +Error Details: +------------------------------------------------------------ + +Error Summary: + - ConnectionError: 1 occurrence(s) + +First 5 errors: + + 1. Batch 2 + Type: ConnectionError + Message: Connection timeout after 30s + Records lost: 1,000 + +⚠️ WARNING: Migration completed with errors! + Please review the error details above. +``` + +## Technical Details + +### Workspace Handling + +The tool retrieves workspace in the following priority order: + +1. **Storage-specific workspace environment variables** + - PGKVStorage: `POSTGRES_WORKSPACE` + - MongoKVStorage: `MONGODB_WORKSPACE` + - RedisKVStorage: `REDIS_WORKSPACE` + +2. **Generic workspace environment variable** + - `WORKSPACE` + +3. **Default value** + - Empty string (uses storage's default workspace) + +### Batch Migration + +- Default batch size: 1000 records/batch +- Avoids memory overflow from loading too much data at once +- Each batch is committed independently, supporting resume capability + +### Memory-Efficient Pagination + +For large datasets, the tool implements storage-specific pagination strategies: + +- **JsonKVStorage**: Direct in-memory access (data already loaded in shared storage) +- **RedisKVStorage**: Cursor-based SCAN with pipeline batching (1000 keys/batch) +- **PGKVStorage**: SQL LIMIT/OFFSET pagination (1000 records/batch) +- **MongoKVStorage**: Cursor streaming with batch_size (1000 documents/batch) + +This ensures the tool can handle millions of cache records without memory issues. + +### Prefix Filtering Implementation + +The tool uses optimized filtering methods for different storage types: + +- **JsonKVStorage**: Direct dictionary iteration with lock protection +- **RedisKVStorage**: SCAN command with namespace-prefixed patterns + pipeline for bulk GET +- **PGKVStorage**: SQL LIKE queries with proper field mapping (id, return_value, etc.) +- **MongoKVStorage**: MongoDB regex queries on `_id` field with cursor streaming + +## Error Handling & Resilience + +The tool implements comprehensive error tracking to ensure transparent and resilient migrations: + +### Batch-Level Error Tracking +- Each batch is independently error-checked +- Failed batches are logged but don't stop the migration +- Successful batches are committed even if later batches fail +- Real-time progress shows ✓ (success) or ✗ (failed) for each batch + +### Error Reporting +After migration completes, a detailed report includes: +- **Statistics**: Total records, success/failure counts, success rate +- **Error Summary**: Grouped by error type with occurrence counts +- **Error Details**: Batch number, error type, message, and records lost +- **Recommendations**: Clear indication of success or need for review + +### No Double Data Loading +- Unlike traditional verification approaches, the tool does NOT reload all target data +- Errors are detected during migration, not after +- This eliminates memory overhead and handles pre-existing target data correctly + +## Important Notes + +1. **Data Overwrite Warning** + - Migration will overwrite records with the same keys in the target storage + - Tool displays a warning if target storage already has data + - Pre-existing data in target storage is handled correctly + +2. **Workspace Consistency** + - Recommended to use the same workspace for source and target + - Cache data in different workspaces are completely isolated + +3. **Interrupt and Resume** + - Migration can be interrupted at any time (Ctrl+C) + - Already migrated data will remain in target storage + - Re-running will overwrite existing records + - Failed batches can be manually retried + +4. **Performance Considerations** + - Large data migration may take considerable time + - Recommend migrating during off-peak hours + - Ensure stable network connection (for remote databases) + - Memory usage stays constant regardless of dataset size + +## Troubleshooting + +### Missing Environment Variables +``` +✗ Missing required environment variables: POSTGRES_USER, POSTGRES_PASSWORD +``` +**Solution**: Add missing variables to your `.env` file + +### Connection Failed +``` +✗ Initialization failed: Connection refused +``` +**Solutions**: +- Check if database service is running +- Verify connection parameters (host, port, credentials) +- Check firewall settings + +**Solutions**: +- Check migration process for error logs +- Re-run migration tool +- Check target storage capacity and permissions + +## Example Scenarios + +### Scenario 1: JSON to MongoDB Migration + +Use case: Migrating from single-machine development to production + +```bash +# 1. Configure environment variables +WORKSPACE=production +MONGO_URI=mongodb://user:pass@prod-server:27017/ +MONGO_DATABASE=LightRAG + +# 2. Run tool +python tools/migrate_llm_cache.py + +# 3. Select: 1 (JsonKVStorage) -> 4 (MongoKVStorage) +``` + +### Scenario 2: PostgreSQL Database Switch + +Use case: Database migration or upgrade + +```bash +# 1. Configure old and new databases +POSTGRES_WORKSPACE=old_db # Source +# ... Configure new database as default + +# 2. Run tool and select same storage type +``` + +### Scenario 3: Redis to PostgreSQL + +Use case: Migrating from cache storage to relational database + +```bash +# 1. Ensure both databases are accessible +REDIS_URI=redis://old-redis:6379 +POSTGRES_HOST=new-postgres-server +# ... Other PostgreSQL configs + +# 2. Run tool +python tools/migrate_llm_cache.py + +# 3. Select: 2 (RedisKVStorage) -> 3 (PGKVStorage) +``` + +## Tool Limitations + +1. **Only Default Mode Caches** + - Only migrates `default:extract:*` and `default:summary:*` + - Query caches are not included + +2. **Workspace Isolation** + - Different workspaces are treated as completely separate + - Cross-workspace migration requires manual workspace reconfiguration + +3. **Network Dependency** + - Tool requires stable network connection for remote databases + - Large datasets may fail if connection is interrupted + +## Best Practices + +1. **Backup Before Migration** + - Always backup your data before migration + - Test migration on non-production data first + +2. **Verify Results** + - Check the verification output after migration + - Manually verify a few cache entries if needed + +3. **Monitor Performance** + - Watch database resource usage during migration + - Consider migrating in smaller batches if needed + +4. **Clean Old Data** + - After successful migration, consider cleaning old cache data + - Keep backups for a reasonable period before deletion + +## Support + +For issues or questions: +- Check LightRAG documentation +- Review error logs for detailed information +- Ensure all environment variables are correctly configured diff --git a/tools/migrate_llm_cache.py b/tools/migrate_llm_cache.py new file mode 100644 index 00000000..cb48f394 --- /dev/null +++ b/tools/migrate_llm_cache.py @@ -0,0 +1,721 @@ +#!/usr/bin/env python3 +""" +LLM Cache Migration Tool for LightRAG + +This tool migrates LLM response cache (default:extract:* and default:summary:*) +between different KV storage implementations while preserving workspace isolation. + +Usage: + python tools/migrate_llm_cache.py + +Supported KV Storage Types: + - JsonKVStorage + - RedisKVStorage + - PGKVStorage + - MongoKVStorage +""" + +import asyncio +import os +import sys +import time +from typing import Any, Dict, List +from dataclasses import dataclass, field +from dotenv import load_dotenv + +# Add parent directory to path for imports +sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) + +from lightrag.kg import STORAGE_ENV_REQUIREMENTS +from lightrag.namespace import NameSpace +from lightrag.utils import setup_logger + +# Load environment variables +load_dotenv(dotenv_path=".env", override=False) + +# Setup logger +setup_logger("lightrag", level="INFO") + +# Storage type configurations +STORAGE_TYPES = { + "1": "JsonKVStorage", + "2": "RedisKVStorage", + "3": "PGKVStorage", + "4": "MongoKVStorage", +} + +# Workspace environment variable mapping +WORKSPACE_ENV_MAP = { + "PGKVStorage": "POSTGRES_WORKSPACE", + "MongoKVStorage": "MONGODB_WORKSPACE", + "RedisKVStorage": "REDIS_WORKSPACE", +} + +# Default batch size for migration +DEFAULT_BATCH_SIZE = 1000 + + +@dataclass +class MigrationStats: + """Migration statistics and error tracking""" + total_source_records: int = 0 + total_batches: int = 0 + successful_batches: int = 0 + failed_batches: int = 0 + successful_records: int = 0 + failed_records: int = 0 + errors: List[Dict[str, Any]] = field(default_factory=list) + + def add_error(self, batch_idx: int, error: Exception, batch_size: int): + """Record batch error""" + self.errors.append({ + 'batch': batch_idx, + 'error_type': type(error).__name__, + 'error_msg': str(error), + 'records_lost': batch_size, + 'timestamp': time.time() + }) + self.failed_batches += 1 + self.failed_records += batch_size + + +class MigrationTool: + """LLM Cache Migration Tool""" + + def __init__(self): + self.source_storage = None + self.target_storage = None + self.source_workspace = "" + self.target_workspace = "" + self.batch_size = DEFAULT_BATCH_SIZE + + def get_workspace_for_storage(self, storage_name: str) -> str: + """Get workspace for a specific storage type + + Priority: Storage-specific env var > WORKSPACE env var > empty string + + Args: + storage_name: Storage implementation name + + Returns: + Workspace name + """ + # Check storage-specific workspace + if storage_name in WORKSPACE_ENV_MAP: + specific_workspace = os.getenv(WORKSPACE_ENV_MAP[storage_name]) + if specific_workspace: + return specific_workspace + + # Check generic WORKSPACE + workspace = os.getenv("WORKSPACE", "") + return workspace + + def check_env_vars(self, storage_name: str) -> bool: + """Check if all required environment variables exist + + Args: + storage_name: Storage implementation name + + Returns: + True if all required env vars exist, False otherwise + """ + required_vars = STORAGE_ENV_REQUIREMENTS.get(storage_name, []) + missing_vars = [var for var in required_vars if var not in os.environ] + + if missing_vars: + print(f"✗ Missing required environment variables: {', '.join(missing_vars)}") + return False + + print("✓ All required environment variables are set") + return True + + def get_storage_class(self, storage_name: str): + """Dynamically import and return storage class + + Args: + storage_name: Storage implementation name + + Returns: + Storage class + """ + if storage_name == "JsonKVStorage": + from lightrag.kg.json_kv_impl import JsonKVStorage + return JsonKVStorage + elif storage_name == "RedisKVStorage": + from lightrag.kg.redis_impl import RedisKVStorage + return RedisKVStorage + elif storage_name == "PGKVStorage": + from lightrag.kg.postgres_impl import PGKVStorage + return PGKVStorage + elif storage_name == "MongoKVStorage": + from lightrag.kg.mongo_impl import MongoKVStorage + return MongoKVStorage + else: + raise ValueError(f"Unsupported storage type: {storage_name}") + + async def initialize_storage(self, storage_name: str, workspace: str): + """Initialize storage instance + + Args: + storage_name: Storage implementation name + workspace: Workspace name + + Returns: + Initialized storage instance + """ + storage_class = self.get_storage_class(storage_name) + + # Create global config + global_config = { + "working_dir": os.getenv("WORKING_DIR", "./rag_storage"), + "embedding_batch_num": 10, + } + + # Initialize storage + storage = storage_class( + namespace=NameSpace.KV_STORE_LLM_RESPONSE_CACHE, + workspace=workspace, + global_config=global_config, + embedding_func=None, + ) + + # Initialize the storage + await storage.initialize() + + return storage + + async def get_default_caches_json(self, storage) -> Dict[str, Any]: + """Get default caches from JsonKVStorage + + Args: + storage: JsonKVStorage instance + + Returns: + Dictionary of cache entries with default:extract:* or default:summary:* keys + """ + # Access _data directly - it's a dict from shared_storage + async with storage._storage_lock: + filtered = {} + for key, value in storage._data.items(): + if key.startswith("default:extract:") or key.startswith("default:summary:"): + filtered[key] = value + return filtered + + async def get_default_caches_redis(self, storage, batch_size: int = 1000) -> Dict[str, Any]: + """Get default caches from RedisKVStorage with pagination + + Args: + storage: RedisKVStorage instance + batch_size: Number of keys to process per batch + + Returns: + Dictionary of cache entries with default:extract:* or default:summary:* keys + """ + import json + + cache_data = {} + + # Use _get_redis_connection() context manager + async with storage._get_redis_connection() as redis: + for pattern in ["default:extract:*", "default:summary:*"]: + # Add namespace prefix to pattern + prefixed_pattern = f"{storage.final_namespace}:{pattern}" + cursor = 0 + + while True: + # SCAN already implements cursor-based pagination + cursor, keys = await redis.scan( + cursor, + match=prefixed_pattern, + count=batch_size + ) + + if keys: + # Process this batch using pipeline with error handling + try: + pipe = redis.pipeline() + for key in keys: + pipe.get(key) + values = await pipe.execute() + + for key, value in zip(keys, values): + if value: + key_str = key.decode() if isinstance(key, bytes) else key + # Remove namespace prefix to get original key + original_key = key_str.replace(f"{storage.final_namespace}:", "", 1) + cache_data[original_key] = json.loads(value) + + except Exception as e: + # Pipeline execution failed, fall back to individual gets + print(f"⚠️ Pipeline execution failed for batch, using individual gets: {e}") + for key in keys: + try: + value = await redis.get(key) + if value: + key_str = key.decode() if isinstance(key, bytes) else key + original_key = key_str.replace(f"{storage.final_namespace}:", "", 1) + cache_data[original_key] = json.loads(value) + except Exception as individual_error: + print(f"⚠️ Failed to get individual key {key}: {individual_error}") + continue + + if cursor == 0: + break + + # Yield control periodically to avoid blocking + await asyncio.sleep(0) + + return cache_data + + async def get_default_caches_pg(self, storage, batch_size: int = 1000) -> Dict[str, Any]: + """Get default caches from PGKVStorage with pagination + + Args: + storage: PGKVStorage instance + batch_size: Number of records to fetch per batch + + Returns: + Dictionary of cache entries with default:extract:* or default:summary:* keys + """ + from lightrag.kg.postgres_impl import namespace_to_table_name + + cache_data = {} + table_name = namespace_to_table_name(storage.namespace) + offset = 0 + + while True: + # Use LIMIT and OFFSET for pagination + query = f""" + SELECT id as key, original_prompt, return_value, chunk_id, cache_type, queryparam, + EXTRACT(EPOCH FROM create_time)::BIGINT as create_time, + EXTRACT(EPOCH FROM update_time)::BIGINT as update_time + FROM {table_name} + WHERE workspace = $1 + AND (id LIKE 'default:extract:%' OR id LIKE 'default:summary:%') + ORDER BY id + LIMIT $2 OFFSET $3 + """ + + results = await storage.db.query( + query, + [storage.workspace, batch_size, offset], + multirows=True + ) + + if not results: + break + + for row in results: + # Map PostgreSQL fields to cache format + cache_entry = { + "return": row.get("return_value", ""), + "cache_type": row.get("cache_type"), + "original_prompt": row.get("original_prompt", ""), + "chunk_id": row.get("chunk_id"), + "queryparam": row.get("queryparam"), + "create_time": row.get("create_time", 0), + "update_time": row.get("update_time", 0), + } + cache_data[row["key"]] = cache_entry + + # If we got fewer results than batch_size, we're done + if len(results) < batch_size: + break + + offset += batch_size + + # Yield control periodically + await asyncio.sleep(0) + + return cache_data + + async def get_default_caches_mongo(self, storage, batch_size: int = 1000) -> Dict[str, Any]: + """Get default caches from MongoKVStorage with cursor-based pagination + + Args: + storage: MongoKVStorage instance + batch_size: Number of documents to process per batch + + Returns: + Dictionary of cache entries with default:extract:* or default:summary:* keys + """ + cache_data = {} + + # MongoDB query with regex - use _data not collection + query = {"_id": {"$regex": "^default:(extract|summary):"}} + + # Use cursor without to_list() - process in batches + cursor = storage._data.find(query).batch_size(batch_size) + + async for doc in cursor: + # Process each document as it comes + doc_copy = doc.copy() + key = doc_copy.pop("_id") + + # Filter ALL MongoDB/database-specific fields + # Following .clinerules: "Always filter deprecated/incompatible fields during deserialization" + for field_name in ["namespace", "workspace", "_id", "content"]: + doc_copy.pop(field_name, None) + + cache_data[key] = doc_copy + + # Periodically yield control (every batch_size documents) + if len(cache_data) % batch_size == 0: + await asyncio.sleep(0) + + return cache_data + + async def get_default_caches(self, storage, storage_name: str) -> Dict[str, Any]: + """Get default caches from any storage type + + Args: + storage: Storage instance + storage_name: Storage type name + + Returns: + Dictionary of cache entries + """ + if storage_name == "JsonKVStorage": + return await self.get_default_caches_json(storage) + elif storage_name == "RedisKVStorage": + return await self.get_default_caches_redis(storage) + elif storage_name == "PGKVStorage": + return await self.get_default_caches_pg(storage) + elif storage_name == "MongoKVStorage": + return await self.get_default_caches_mongo(storage) + else: + raise ValueError(f"Unsupported storage type: {storage_name}") + + async def count_cache_types(self, cache_data: Dict[str, Any]) -> Dict[str, int]: + """Count cache entries by type + + Args: + cache_data: Dictionary of cache entries + + Returns: + Dictionary with counts for each cache type + """ + counts = { + "extract": 0, + "summary": 0, + } + + for key in cache_data.keys(): + if key.startswith("default:extract:"): + counts["extract"] += 1 + elif key.startswith("default:summary:"): + counts["summary"] += 1 + + return counts + + def print_header(self): + """Print tool header""" + print("\n" + "=" * 50) + print("LLM Cache Migration Tool - LightRAG") + print("=" * 50) + + def print_storage_types(self): + """Print available storage types""" + print("\nSupported KV Storage Types:") + for key, value in STORAGE_TYPES.items(): + print(f"[{key}] {value}") + + def get_user_choice(self, prompt: str, valid_choices: list) -> str: + """Get user choice with validation + + Args: + prompt: Prompt message + valid_choices: List of valid choices + + Returns: + User's choice + """ + while True: + choice = input(f"\n{prompt}: ").strip() + if choice in valid_choices: + return choice + print(f"✗ Invalid choice, please enter one of: {', '.join(valid_choices)}") + + async def setup_storage(self, storage_type: str) -> tuple: + """Setup and initialize storage + + Args: + storage_type: Type label (source/target) + + Returns: + Tuple of (storage_instance, storage_name, workspace, cache_data) + """ + print(f"\n=== {storage_type} Storage Setup ===") + + # Get storage type choice + choice = self.get_user_choice( + f"Select {storage_type} storage type (1-4)", + list(STORAGE_TYPES.keys()) + ) + storage_name = STORAGE_TYPES[choice] + + # Check environment variables + print("\nChecking environment variables...") + if not self.check_env_vars(storage_name): + return None, None, None, None + + # Get workspace + workspace = self.get_workspace_for_storage(storage_name) + + # Initialize storage + print(f"\nInitializing {storage_type} storage...") + try: + storage = await self.initialize_storage(storage_name, workspace) + print(f"- Storage Type: {storage_name}") + print(f"- Workspace: {workspace if workspace else '(default)'}") + print("- Connection Status: ✓ Success") + except Exception as e: + print(f"✗ Initialization failed: {e}") + return None, None, None, None + + # Get cache data + print("\nCounting cache records...") + try: + cache_data = await self.get_default_caches(storage, storage_name) + counts = await self.count_cache_types(cache_data) + + print(f"- default:extract: {counts['extract']:,} records") + print(f"- default:summary: {counts['summary']:,} records") + print(f"- Total: {len(cache_data):,} records") + except Exception as e: + print(f"✗ Counting failed: {e}") + return None, None, None, None + + return storage, storage_name, workspace, cache_data + + async def migrate_caches( + self, + source_data: Dict[str, Any], + target_storage, + target_storage_name: str + ) -> MigrationStats: + """Migrate caches in batches with error tracking + + Args: + source_data: Source cache data + target_storage: Target storage instance + target_storage_name: Target storage type name + + Returns: + MigrationStats object with migration results and errors + """ + stats = MigrationStats() + stats.total_source_records = len(source_data) + + if stats.total_source_records == 0: + print("\nNo records to migrate") + return stats + + # Convert to list for batching + items = list(source_data.items()) + stats.total_batches = (stats.total_source_records + self.batch_size - 1) // self.batch_size + + print("\n=== Starting Migration ===") + + for batch_idx in range(stats.total_batches): + start_idx = batch_idx * self.batch_size + end_idx = min((batch_idx + 1) * self.batch_size, stats.total_source_records) + batch_items = items[start_idx:end_idx] + batch_data = dict(batch_items) + + # Determine current cache type for display + current_key = batch_items[0][0] + cache_type = "extract" if "extract" in current_key else "summary" + + try: + # Attempt to write batch + await target_storage.upsert(batch_data) + + # Success - update stats + stats.successful_batches += 1 + stats.successful_records += len(batch_data) + + # Calculate progress + progress = (end_idx / stats.total_source_records) * 100 + bar_length = 20 + filled_length = int(bar_length * end_idx // stats.total_source_records) + bar = "█" * filled_length + "░" * (bar_length - filled_length) + + print(f"Batch {batch_idx + 1}/{stats.total_batches}: {bar} " + f"{end_idx:,}/{stats.total_source_records:,} ({progress:.0f}%) - " + f"default:{cache_type} ✓") + + except Exception as e: + # Error - record and continue + stats.add_error(batch_idx + 1, e, len(batch_data)) + + print(f"Batch {batch_idx + 1}/{stats.total_batches}: ✗ FAILED - " + f"{type(e).__name__}: {str(e)}") + + # Final persist + print("\nPersisting data to disk...") + try: + await target_storage.index_done_callback() + print("✓ Data persisted successfully") + except Exception as e: + print(f"✗ Persist failed: {e}") + stats.add_error(0, e, 0) # batch 0 = persist error + + return stats + + def print_migration_report(self, stats: MigrationStats): + """Print comprehensive migration report + + Args: + stats: MigrationStats object with migration results + """ + print("\n" + "=" * 60) + print("Migration Complete - Final Report") + print("=" * 60) + + # Overall statistics + print("\n📊 Statistics:") + print(f" Total source records: {stats.total_source_records:,}") + print(f" Total batches: {stats.total_batches:,}") + print(f" Successful batches: {stats.successful_batches:,}") + print(f" Failed batches: {stats.failed_batches:,}") + print(f" Successfully migrated: {stats.successful_records:,}") + print(f" Failed to migrate: {stats.failed_records:,}") + + # Success rate + success_rate = (stats.successful_records / stats.total_source_records * 100) if stats.total_source_records > 0 else 0 + print(f" Success rate: {success_rate:.2f}%") + + # Error details + if stats.errors: + print(f"\n⚠️ Errors encountered: {len(stats.errors)}") + print("\nError Details:") + print("-" * 60) + + # Group errors by type + error_types = {} + for error in stats.errors: + err_type = error['error_type'] + error_types[err_type] = error_types.get(err_type, 0) + 1 + + print("\nError Summary:") + for err_type, count in sorted(error_types.items(), key=lambda x: -x[1]): + print(f" - {err_type}: {count} occurrence(s)") + + print("\nFirst 5 errors:") + for i, error in enumerate(stats.errors[:5], 1): + print(f"\n {i}. Batch {error['batch']}") + print(f" Type: {error['error_type']}") + print(f" Message: {error['error_msg']}") + print(f" Records lost: {error['records_lost']:,}") + + if len(stats.errors) > 5: + print(f"\n ... and {len(stats.errors) - 5} more errors") + + print("\n" + "=" * 60) + print("⚠️ WARNING: Migration completed with errors!") + print(" Please review the error details above.") + print("=" * 60) + else: + print("\n" + "=" * 60) + print("✓ SUCCESS: All records migrated successfully!") + print("=" * 60) + + async def run(self): + """Run the migration tool""" + try: + # Print header + self.print_header() + self.print_storage_types() + + # Setup source storage + ( + self.source_storage, + source_storage_name, + self.source_workspace, + source_data + ) = await self.setup_storage("Source") + + if not self.source_storage: + print("\n✗ Source storage setup failed") + return + + if not source_data: + print("\n⚠ Source storage has no cache records to migrate") + # Cleanup + await self.source_storage.finalize() + return + + # Setup target storage + ( + self.target_storage, + target_storage_name, + self.target_workspace, + target_data + ) = await self.setup_storage("Target") + + if not self.target_storage: + print("\n✗ Target storage setup failed") + # Cleanup source + await self.source_storage.finalize() + return + + # Show migration summary + print("\n" + "=" * 50) + print("Migration Confirmation") + print("=" * 50) + print(f"Source: {source_storage_name} (workspace: {self.source_workspace if self.source_workspace else '(default)'}) - {len(source_data):,} records") + print(f"Target: {target_storage_name} (workspace: {self.target_workspace if self.target_workspace else '(default)'}) - {len(target_data):,} records") + print(f"Batch Size: {self.batch_size:,} records/batch") + + if target_data: + print(f"\n⚠ Warning: Target storage already has {len(target_data):,} records") + print("Migration will overwrite records with the same keys") + + # Confirm migration + confirm = input("\nContinue? (y/n): ").strip().lower() + if confirm != 'y': + print("\n✗ Migration cancelled") + # Cleanup + await self.source_storage.finalize() + await self.target_storage.finalize() + return + + # Perform migration with error tracking + stats = await self.migrate_caches(source_data, self.target_storage, target_storage_name) + + # Print comprehensive migration report + self.print_migration_report(stats) + + # Cleanup + await self.source_storage.finalize() + await self.target_storage.finalize() + + except KeyboardInterrupt: + print("\n\n✗ Migration interrupted by user") + except Exception as e: + print(f"\n✗ Migration failed: {e}") + import traceback + traceback.print_exc() + finally: + # Ensure cleanup + if self.source_storage: + try: + await self.source_storage.finalize() + except Exception: + pass + if self.target_storage: + try: + await self.target_storage.finalize() + except Exception: + pass + + +async def main(): + """Main entry point""" + tool = MigrationTool() + await tool.run() + + +if __name__ == "__main__": + asyncio.run(main()) From 0f2c0de8df2f84f60d8def43f8c7edf8bf799411 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 18:16:03 +0800 Subject: [PATCH 16/62] Fix linting --- tools/README_MIGRATE_LLM_CACHE.md | 2 +- tools/migrate_llm_cache.py | 344 +++++++++++++++++------------- 2 files changed, 194 insertions(+), 152 deletions(-) diff --git a/tools/README_MIGRATE_LLM_CACHE.md b/tools/README_MIGRATE_LLM_CACHE.md index edd49acd..364083d7 100644 --- a/tools/README_MIGRATE_LLM_CACHE.md +++ b/tools/README_MIGRATE_LLM_CACHE.md @@ -261,7 +261,7 @@ The tool implements comprehensive error tracking to ensure transparent and resil ### Error Reporting After migration completes, a detailed report includes: - **Statistics**: Total records, success/failure counts, success rate -- **Error Summary**: Grouped by error type with occurrence counts +- **Error Summary**: Grouped by error type with occurrence counts - **Error Details**: Batch number, error type, message, and records lost - **Recommendations**: Clear indication of success or need for review diff --git a/tools/migrate_llm_cache.py b/tools/migrate_llm_cache.py index cb48f394..26b7c81c 100644 --- a/tools/migrate_llm_cache.py +++ b/tools/migrate_llm_cache.py @@ -10,7 +10,7 @@ Usage: Supported KV Storage Types: - JsonKVStorage - - RedisKVStorage + - RedisKVStorage - PGKVStorage - MongoKVStorage """ @@ -58,6 +58,7 @@ DEFAULT_BATCH_SIZE = 1000 @dataclass class MigrationStats: """Migration statistics and error tracking""" + total_source_records: int = 0 total_batches: int = 0 successful_batches: int = 0 @@ -65,16 +66,18 @@ class MigrationStats: successful_records: int = 0 failed_records: int = 0 errors: List[Dict[str, Any]] = field(default_factory=list) - + def add_error(self, batch_idx: int, error: Exception, batch_size: int): """Record batch error""" - self.errors.append({ - 'batch': batch_idx, - 'error_type': type(error).__name__, - 'error_msg': str(error), - 'records_lost': batch_size, - 'timestamp': time.time() - }) + self.errors.append( + { + "batch": batch_idx, + "error_type": type(error).__name__, + "error_msg": str(error), + "records_lost": batch_size, + "timestamp": time.time(), + } + ) self.failed_batches += 1 self.failed_records += batch_size @@ -91,12 +94,12 @@ class MigrationTool: def get_workspace_for_storage(self, storage_name: str) -> str: """Get workspace for a specific storage type - + Priority: Storage-specific env var > WORKSPACE env var > empty string - + Args: storage_name: Storage implementation name - + Returns: Workspace name """ @@ -105,72 +108,78 @@ class MigrationTool: specific_workspace = os.getenv(WORKSPACE_ENV_MAP[storage_name]) if specific_workspace: return specific_workspace - + # Check generic WORKSPACE workspace = os.getenv("WORKSPACE", "") return workspace def check_env_vars(self, storage_name: str) -> bool: """Check if all required environment variables exist - + Args: storage_name: Storage implementation name - + Returns: True if all required env vars exist, False otherwise """ required_vars = STORAGE_ENV_REQUIREMENTS.get(storage_name, []) missing_vars = [var for var in required_vars if var not in os.environ] - + if missing_vars: - print(f"✗ Missing required environment variables: {', '.join(missing_vars)}") + print( + f"✗ Missing required environment variables: {', '.join(missing_vars)}" + ) return False - + print("✓ All required environment variables are set") return True def get_storage_class(self, storage_name: str): """Dynamically import and return storage class - + Args: storage_name: Storage implementation name - + Returns: Storage class """ if storage_name == "JsonKVStorage": from lightrag.kg.json_kv_impl import JsonKVStorage + return JsonKVStorage elif storage_name == "RedisKVStorage": from lightrag.kg.redis_impl import RedisKVStorage + return RedisKVStorage elif storage_name == "PGKVStorage": from lightrag.kg.postgres_impl import PGKVStorage + return PGKVStorage elif storage_name == "MongoKVStorage": from lightrag.kg.mongo_impl import MongoKVStorage + return MongoKVStorage else: raise ValueError(f"Unsupported storage type: {storage_name}") async def initialize_storage(self, storage_name: str, workspace: str): """Initialize storage instance - + Args: storage_name: Storage implementation name workspace: Workspace name - + Returns: Initialized storage instance """ storage_class = self.get_storage_class(storage_name) - + # Create global config global_config = { "working_dir": os.getenv("WORKING_DIR", "./rag_storage"), "embedding_batch_num": 10, } - + # Initialize storage storage = storage_class( namespace=NameSpace.KV_STORE_LLM_RESPONSE_CACHE, @@ -178,18 +187,18 @@ class MigrationTool: global_config=global_config, embedding_func=None, ) - + # Initialize the storage await storage.initialize() - + return storage async def get_default_caches_json(self, storage) -> Dict[str, Any]: """Get default caches from JsonKVStorage - + Args: storage: JsonKVStorage instance - + Returns: Dictionary of cache entries with default:extract:* or default:summary:* keys """ @@ -197,39 +206,41 @@ class MigrationTool: async with storage._storage_lock: filtered = {} for key, value in storage._data.items(): - if key.startswith("default:extract:") or key.startswith("default:summary:"): + if key.startswith("default:extract:") or key.startswith( + "default:summary:" + ): filtered[key] = value return filtered - async def get_default_caches_redis(self, storage, batch_size: int = 1000) -> Dict[str, Any]: + async def get_default_caches_redis( + self, storage, batch_size: int = 1000 + ) -> Dict[str, Any]: """Get default caches from RedisKVStorage with pagination - + Args: storage: RedisKVStorage instance batch_size: Number of keys to process per batch - + Returns: Dictionary of cache entries with default:extract:* or default:summary:* keys """ import json - + cache_data = {} - + # Use _get_redis_connection() context manager async with storage._get_redis_connection() as redis: for pattern in ["default:extract:*", "default:summary:*"]: # Add namespace prefix to pattern prefixed_pattern = f"{storage.final_namespace}:{pattern}" cursor = 0 - + while True: # SCAN already implements cursor-based pagination cursor, keys = await redis.scan( - cursor, - match=prefixed_pattern, - count=batch_size + cursor, match=prefixed_pattern, count=batch_size ) - + if keys: # Process this batch using pipeline with error handling try: @@ -237,74 +248,88 @@ class MigrationTool: for key in keys: pipe.get(key) values = await pipe.execute() - + for key, value in zip(keys, values): if value: - key_str = key.decode() if isinstance(key, bytes) else key + key_str = ( + key.decode() if isinstance(key, bytes) else key + ) # Remove namespace prefix to get original key - original_key = key_str.replace(f"{storage.final_namespace}:", "", 1) + original_key = key_str.replace( + f"{storage.final_namespace}:", "", 1 + ) cache_data[original_key] = json.loads(value) - + except Exception as e: # Pipeline execution failed, fall back to individual gets - print(f"⚠️ Pipeline execution failed for batch, using individual gets: {e}") + print( + f"⚠️ Pipeline execution failed for batch, using individual gets: {e}" + ) for key in keys: try: value = await redis.get(key) if value: - key_str = key.decode() if isinstance(key, bytes) else key - original_key = key_str.replace(f"{storage.final_namespace}:", "", 1) + key_str = ( + key.decode() + if isinstance(key, bytes) + else key + ) + original_key = key_str.replace( + f"{storage.final_namespace}:", "", 1 + ) cache_data[original_key] = json.loads(value) except Exception as individual_error: - print(f"⚠️ Failed to get individual key {key}: {individual_error}") + print( + f"⚠️ Failed to get individual key {key}: {individual_error}" + ) continue - + if cursor == 0: break - + # Yield control periodically to avoid blocking await asyncio.sleep(0) - + return cache_data - async def get_default_caches_pg(self, storage, batch_size: int = 1000) -> Dict[str, Any]: + async def get_default_caches_pg( + self, storage, batch_size: int = 1000 + ) -> Dict[str, Any]: """Get default caches from PGKVStorage with pagination - + Args: storage: PGKVStorage instance batch_size: Number of records to fetch per batch - + Returns: Dictionary of cache entries with default:extract:* or default:summary:* keys """ from lightrag.kg.postgres_impl import namespace_to_table_name - + cache_data = {} table_name = namespace_to_table_name(storage.namespace) offset = 0 - + while True: # Use LIMIT and OFFSET for pagination query = f""" SELECT id as key, original_prompt, return_value, chunk_id, cache_type, queryparam, EXTRACT(EPOCH FROM create_time)::BIGINT as create_time, EXTRACT(EPOCH FROM update_time)::BIGINT as update_time - FROM {table_name} - WHERE workspace = $1 + FROM {table_name} + WHERE workspace = $1 AND (id LIKE 'default:extract:%' OR id LIKE 'default:summary:%') ORDER BY id LIMIT $2 OFFSET $3 """ - + results = await storage.db.query( - query, - [storage.workspace, batch_size, offset], - multirows=True + query, [storage.workspace, batch_size, offset], multirows=True ) - + if not results: break - + for row in results: # Map PostgreSQL fields to cache format cache_entry = { @@ -317,61 +342,63 @@ class MigrationTool: "update_time": row.get("update_time", 0), } cache_data[row["key"]] = cache_entry - + # If we got fewer results than batch_size, we're done if len(results) < batch_size: break - + offset += batch_size - + # Yield control periodically await asyncio.sleep(0) - + return cache_data - async def get_default_caches_mongo(self, storage, batch_size: int = 1000) -> Dict[str, Any]: + async def get_default_caches_mongo( + self, storage, batch_size: int = 1000 + ) -> Dict[str, Any]: """Get default caches from MongoKVStorage with cursor-based pagination - + Args: storage: MongoKVStorage instance batch_size: Number of documents to process per batch - + Returns: Dictionary of cache entries with default:extract:* or default:summary:* keys """ cache_data = {} - + # MongoDB query with regex - use _data not collection query = {"_id": {"$regex": "^default:(extract|summary):"}} - + # Use cursor without to_list() - process in batches cursor = storage._data.find(query).batch_size(batch_size) - + async for doc in cursor: # Process each document as it comes doc_copy = doc.copy() key = doc_copy.pop("_id") - + # Filter ALL MongoDB/database-specific fields # Following .clinerules: "Always filter deprecated/incompatible fields during deserialization" for field_name in ["namespace", "workspace", "_id", "content"]: doc_copy.pop(field_name, None) - + cache_data[key] = doc_copy - + # Periodically yield control (every batch_size documents) if len(cache_data) % batch_size == 0: await asyncio.sleep(0) - + return cache_data async def get_default_caches(self, storage, storage_name: str) -> Dict[str, Any]: """Get default caches from any storage type - + Args: storage: Storage instance storage_name: Storage type name - + Returns: Dictionary of cache entries """ @@ -388,10 +415,10 @@ class MigrationTool: async def count_cache_types(self, cache_data: Dict[str, Any]) -> Dict[str, int]: """Count cache entries by type - + Args: cache_data: Dictionary of cache entries - + Returns: Dictionary with counts for each cache type """ @@ -399,13 +426,13 @@ class MigrationTool: "extract": 0, "summary": 0, } - + for key in cache_data.keys(): if key.startswith("default:extract:"): counts["extract"] += 1 elif key.startswith("default:summary:"): counts["summary"] += 1 - + return counts def print_header(self): @@ -422,11 +449,11 @@ class MigrationTool: def get_user_choice(self, prompt: str, valid_choices: list) -> str: """Get user choice with validation - + Args: prompt: Prompt message valid_choices: List of valid choices - + Returns: User's choice """ @@ -438,30 +465,29 @@ class MigrationTool: async def setup_storage(self, storage_type: str) -> tuple: """Setup and initialize storage - + Args: storage_type: Type label (source/target) - + Returns: Tuple of (storage_instance, storage_name, workspace, cache_data) """ print(f"\n=== {storage_type} Storage Setup ===") - + # Get storage type choice choice = self.get_user_choice( - f"Select {storage_type} storage type (1-4)", - list(STORAGE_TYPES.keys()) + f"Select {storage_type} storage type (1-4)", list(STORAGE_TYPES.keys()) ) storage_name = STORAGE_TYPES[choice] - + # Check environment variables print("\nChecking environment variables...") if not self.check_env_vars(storage_name): return None, None, None, None - + # Get workspace workspace = self.get_workspace_for_storage(storage_name) - + # Initialize storage print(f"\nInitializing {storage_type} storage...") try: @@ -472,86 +498,89 @@ class MigrationTool: except Exception as e: print(f"✗ Initialization failed: {e}") return None, None, None, None - + # Get cache data print("\nCounting cache records...") try: cache_data = await self.get_default_caches(storage, storage_name) counts = await self.count_cache_types(cache_data) - + print(f"- default:extract: {counts['extract']:,} records") print(f"- default:summary: {counts['summary']:,} records") print(f"- Total: {len(cache_data):,} records") except Exception as e: print(f"✗ Counting failed: {e}") return None, None, None, None - + return storage, storage_name, workspace, cache_data async def migrate_caches( - self, - source_data: Dict[str, Any], - target_storage, - target_storage_name: str + self, source_data: Dict[str, Any], target_storage, target_storage_name: str ) -> MigrationStats: """Migrate caches in batches with error tracking - + Args: source_data: Source cache data target_storage: Target storage instance target_storage_name: Target storage type name - + Returns: MigrationStats object with migration results and errors """ stats = MigrationStats() stats.total_source_records = len(source_data) - + if stats.total_source_records == 0: print("\nNo records to migrate") return stats - + # Convert to list for batching items = list(source_data.items()) - stats.total_batches = (stats.total_source_records + self.batch_size - 1) // self.batch_size - + stats.total_batches = ( + stats.total_source_records + self.batch_size - 1 + ) // self.batch_size + print("\n=== Starting Migration ===") - + for batch_idx in range(stats.total_batches): start_idx = batch_idx * self.batch_size end_idx = min((batch_idx + 1) * self.batch_size, stats.total_source_records) batch_items = items[start_idx:end_idx] batch_data = dict(batch_items) - + # Determine current cache type for display current_key = batch_items[0][0] cache_type = "extract" if "extract" in current_key else "summary" - + try: # Attempt to write batch await target_storage.upsert(batch_data) - + # Success - update stats stats.successful_batches += 1 stats.successful_records += len(batch_data) - + # Calculate progress progress = (end_idx / stats.total_source_records) * 100 bar_length = 20 filled_length = int(bar_length * end_idx // stats.total_source_records) bar = "█" * filled_length + "░" * (bar_length - filled_length) - - print(f"Batch {batch_idx + 1}/{stats.total_batches}: {bar} " - f"{end_idx:,}/{stats.total_source_records:,} ({progress:.0f}%) - " - f"default:{cache_type} ✓") - + + print( + f"Batch {batch_idx + 1}/{stats.total_batches}: {bar} " + f"{end_idx:,}/{stats.total_source_records:,} ({progress:.0f}%) - " + f"default:{cache_type} ✓" + ) + except Exception as e: # Error - record and continue stats.add_error(batch_idx + 1, e, len(batch_data)) - - print(f"Batch {batch_idx + 1}/{stats.total_batches}: ✗ FAILED - " - f"{type(e).__name__}: {str(e)}") - + + print( + f"Batch {batch_idx + 1}/{stats.total_batches}: ✗ FAILED - " + f"{type(e).__name__}: {str(e)}" + ) + # Final persist print("\nPersisting data to disk...") try: @@ -560,19 +589,19 @@ class MigrationTool: except Exception as e: print(f"✗ Persist failed: {e}") stats.add_error(0, e, 0) # batch 0 = persist error - + return stats def print_migration_report(self, stats: MigrationStats): """Print comprehensive migration report - + Args: stats: MigrationStats object with migration results """ print("\n" + "=" * 60) print("Migration Complete - Final Report") print("=" * 60) - + # Overall statistics print("\n📊 Statistics:") print(f" Total source records: {stats.total_source_records:,}") @@ -581,37 +610,41 @@ class MigrationTool: print(f" Failed batches: {stats.failed_batches:,}") print(f" Successfully migrated: {stats.successful_records:,}") print(f" Failed to migrate: {stats.failed_records:,}") - + # Success rate - success_rate = (stats.successful_records / stats.total_source_records * 100) if stats.total_source_records > 0 else 0 + success_rate = ( + (stats.successful_records / stats.total_source_records * 100) + if stats.total_source_records > 0 + else 0 + ) print(f" Success rate: {success_rate:.2f}%") - + # Error details if stats.errors: print(f"\n⚠️ Errors encountered: {len(stats.errors)}") print("\nError Details:") print("-" * 60) - + # Group errors by type error_types = {} for error in stats.errors: - err_type = error['error_type'] + err_type = error["error_type"] error_types[err_type] = error_types.get(err_type, 0) + 1 - + print("\nError Summary:") for err_type, count in sorted(error_types.items(), key=lambda x: -x[1]): print(f" - {err_type}: {count} occurrence(s)") - + print("\nFirst 5 errors:") for i, error in enumerate(stats.errors[:5], 1): print(f"\n {i}. Batch {error['batch']}") print(f" Type: {error['error_type']}") print(f" Message: {error['error_msg']}") print(f" Records lost: {error['records_lost']:,}") - + if len(stats.errors) > 5: print(f"\n ... and {len(stats.errors) - 5} more errors") - + print("\n" + "=" * 60) print("⚠️ WARNING: Migration completed with errors!") print(" Please review the error details above.") @@ -627,75 +660,84 @@ class MigrationTool: # Print header self.print_header() self.print_storage_types() - + # Setup source storage ( self.source_storage, source_storage_name, self.source_workspace, - source_data + source_data, ) = await self.setup_storage("Source") - + if not self.source_storage: print("\n✗ Source storage setup failed") return - + if not source_data: print("\n⚠ Source storage has no cache records to migrate") # Cleanup await self.source_storage.finalize() return - + # Setup target storage ( self.target_storage, target_storage_name, self.target_workspace, - target_data + target_data, ) = await self.setup_storage("Target") - + if not self.target_storage: print("\n✗ Target storage setup failed") # Cleanup source await self.source_storage.finalize() return - + # Show migration summary print("\n" + "=" * 50) print("Migration Confirmation") print("=" * 50) - print(f"Source: {source_storage_name} (workspace: {self.source_workspace if self.source_workspace else '(default)'}) - {len(source_data):,} records") - print(f"Target: {target_storage_name} (workspace: {self.target_workspace if self.target_workspace else '(default)'}) - {len(target_data):,} records") + print( + f"Source: {source_storage_name} (workspace: {self.source_workspace if self.source_workspace else '(default)'}) - {len(source_data):,} records" + ) + print( + f"Target: {target_storage_name} (workspace: {self.target_workspace if self.target_workspace else '(default)'}) - {len(target_data):,} records" + ) print(f"Batch Size: {self.batch_size:,} records/batch") - + if target_data: - print(f"\n⚠ Warning: Target storage already has {len(target_data):,} records") + print( + f"\n⚠ Warning: Target storage already has {len(target_data):,} records" + ) print("Migration will overwrite records with the same keys") - + # Confirm migration confirm = input("\nContinue? (y/n): ").strip().lower() - if confirm != 'y': + if confirm != "y": print("\n✗ Migration cancelled") # Cleanup await self.source_storage.finalize() await self.target_storage.finalize() return - + # Perform migration with error tracking - stats = await self.migrate_caches(source_data, self.target_storage, target_storage_name) - + stats = await self.migrate_caches( + source_data, self.target_storage, target_storage_name + ) + # Print comprehensive migration report self.print_migration_report(stats) - + # Cleanup await self.source_storage.finalize() await self.target_storage.finalize() - + except KeyboardInterrupt: print("\n\n✗ Migration interrupted by user") except Exception as e: print(f"\n✗ Migration failed: {e}") import traceback + traceback.print_exc() finally: # Ensure cleanup From 6fc54d3625a9272521e8565ea691cd8084b5343d Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 18:33:13 +0800 Subject: [PATCH 17/62] Move LLM cache migration tool to lightrag.tools module - Relocated tool to proper package structure - Updated import paths and documentation - Added shared storage initialization - Fixed module path resolution - Updated usage instructions --- .../tools}/README_MIGRATE_LLM_CACHE.md | 8 +++++--- .../tools}/migrate_llm_cache.py | 19 ++++++++++++++++--- 2 files changed, 21 insertions(+), 6 deletions(-) rename {tools => lightrag/tools}/README_MIGRATE_LLM_CACHE.md (98%) rename {tools => lightrag/tools}/migrate_llm_cache.py (97%) diff --git a/tools/README_MIGRATE_LLM_CACHE.md b/lightrag/tools/README_MIGRATE_LLM_CACHE.md similarity index 98% rename from tools/README_MIGRATE_LLM_CACHE.md rename to lightrag/tools/README_MIGRATE_LLM_CACHE.md index 364083d7..3fef0303 100644 --- a/tools/README_MIGRATE_LLM_CACHE.md +++ b/lightrag/tools/README_MIGRATE_LLM_CACHE.md @@ -78,7 +78,9 @@ pip install -r requirements.txt Run from the LightRAG project root directory: ```bash -python tools/migrate_llm_cache.py +python -m lightrag.tools.migrate_llm_cache +# or +python lightrag/tools/migrate_llm_cache.py ``` ### Interactive Workflow @@ -328,7 +330,7 @@ MONGO_URI=mongodb://user:pass@prod-server:27017/ MONGO_DATABASE=LightRAG # 2. Run tool -python tools/migrate_llm_cache.py +python -m lightrag.tools.migrate_llm_cache # 3. Select: 1 (JsonKVStorage) -> 4 (MongoKVStorage) ``` @@ -356,7 +358,7 @@ POSTGRES_HOST=new-postgres-server # ... Other PostgreSQL configs # 2. Run tool -python tools/migrate_llm_cache.py +python -m lightrag.tools.migrate_llm_cache # 3. Select: 2 (RedisKVStorage) -> 3 (PGKVStorage) ``` diff --git a/tools/migrate_llm_cache.py b/lightrag/tools/migrate_llm_cache.py similarity index 97% rename from tools/migrate_llm_cache.py rename to lightrag/tools/migrate_llm_cache.py index 26b7c81c..68866264 100644 --- a/tools/migrate_llm_cache.py +++ b/lightrag/tools/migrate_llm_cache.py @@ -6,7 +6,9 @@ This tool migrates LLM response cache (default:extract:* and default:summary:*) between different KV storage implementations while preserving workspace isolation. Usage: - python tools/migrate_llm_cache.py + python -m lightrag.tools.migrate_llm_cache + # or + python lightrag/tools/migrate_llm_cache.py Supported KV Storage Types: - JsonKVStorage @@ -23,8 +25,8 @@ from typing import Any, Dict, List from dataclasses import dataclass, field from dotenv import load_dotenv -# Add parent directory to path for imports -sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) +# Add project root to path for imports +sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))) from lightrag.kg import STORAGE_ENV_REQUIREMENTS from lightrag.namespace import NameSpace @@ -657,6 +659,10 @@ class MigrationTool: async def run(self): """Run the migration tool""" try: + # Initialize shared storage (REQUIRED for storage classes to work) + from lightrag.kg.shared_storage import initialize_share_data + initialize_share_data(workers=1) + # Print header self.print_header() self.print_storage_types() @@ -751,6 +757,13 @@ class MigrationTool: await self.target_storage.finalize() except Exception: pass + + # Finalize shared storage + try: + from lightrag.kg.shared_storage import finalize_share_data + finalize_share_data() + except Exception: + pass async def main(): From d0d31e9262c3b5b1492dd64efd517edb5e4906a2 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 18:52:33 +0800 Subject: [PATCH 18/62] Improve LLM cache migration tool configuration and messaging --- lightrag/tools/migrate_llm_cache.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/lightrag/tools/migrate_llm_cache.py b/lightrag/tools/migrate_llm_cache.py index 68866264..a9d1f18a 100644 --- a/lightrag/tools/migrate_llm_cache.py +++ b/lightrag/tools/migrate_llm_cache.py @@ -33,6 +33,9 @@ from lightrag.namespace import NameSpace from lightrag.utils import setup_logger # Load environment variables +# use the .env that is inside the current folder +# allows to use different .env file for each lightrag instance +# the OS environment variables take precedence over the .env file load_dotenv(dotenv_path=".env", override=False) # Setup logger @@ -713,7 +716,7 @@ class MigrationTool: if target_data: print( - f"\n⚠ Warning: Target storage already has {len(target_data):,} records" + f"\n⚠️ Warning: Target storage already has {len(target_data):,} records" ) print("Migration will overwrite records with the same keys") From 6b9f13c79287ac26ae598da851a6406d392f3421 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 19:38:00 +0800 Subject: [PATCH 19/62] Enhance LLM cache migration tool with streaming and improved UX - Add streaming migration for memory efficiency - Implement graceful exit with Enter/0 - Add progress indicators for counting - Optimize batch processing by storage type - Update docs with new progress displays --- lightrag/tools/README_MIGRATE_LLM_CACHE.md | 25 +- lightrag/tools/migrate_llm_cache.py | 559 +++++++++++++++++++-- 2 files changed, 538 insertions(+), 46 deletions(-) diff --git a/lightrag/tools/README_MIGRATE_LLM_CACHE.md b/lightrag/tools/README_MIGRATE_LLM_CACHE.md index 3fef0303..b06efa5b 100644 --- a/lightrag/tools/README_MIGRATE_LLM_CACHE.md +++ b/lightrag/tools/README_MIGRATE_LLM_CACHE.md @@ -95,9 +95,11 @@ Supported KV Storage Types: [3] PGKVStorage [4] MongoKVStorage -Select Source storage type (1-4): 1 +Select Source storage type (1-4) (Press Enter or 0 to exit): 1 ``` +**Note**: You can press Enter or type `0` at the source storage selection to exit gracefully. + #### 2. Source Storage Validation The tool will: - Check required environment variables @@ -115,22 +117,33 @@ Initializing Source storage... - Connection Status: ✓ Success Counting cache records... -- default:extract: 8,500 records -- default:summary: 234 records - Total: 8,734 records ``` +**Progress Display by Storage Type:** +- **JsonKVStorage**: Fast in-memory counting, no progress display needed +- **RedisKVStorage**: Real-time scanning progress + ``` + Scanning Redis keys... found 8,734 records + ``` +- **PostgreSQL**: Shows timing if operation takes >1 second + ``` + Counting PostgreSQL records... (took 2.3s) + ``` +- **MongoDB**: Shows timing if operation takes >1 second + ``` + Counting MongoDB documents... (took 1.8s) + ``` + #### 3. Select Target Storage Type Repeat steps 1-2 to select and validate the target storage. #### 4. Confirm Migration -Review the migration summary and confirm: - ``` -Migration Confirmation ================================================== +Migration Confirmation Source: JsonKVStorage (workspace: space1) - 8,734 records Target: MongoKVStorage (workspace: space1) - 0 records Batch Size: 1,000 records/batch diff --git a/lightrag/tools/migrate_llm_cache.py b/lightrag/tools/migrate_llm_cache.py index a9d1f18a..a339d985 100644 --- a/lightrag/tools/migrate_llm_cache.py +++ b/lightrag/tools/migrate_llm_cache.py @@ -26,7 +26,9 @@ from dataclasses import dataclass, field from dotenv import load_dotenv # Add project root to path for imports -sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))) +sys.path.insert( + 0, os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) +) from lightrag.kg import STORAGE_ENV_REQUIREMENTS from lightrag.namespace import NameSpace @@ -60,6 +62,10 @@ WORKSPACE_ENV_MAP = { DEFAULT_BATCH_SIZE = 1000 +# Default count batch size for efficient counting +DEFAULT_COUNT_BATCH_SIZE = 1000 + + @dataclass class MigrationStats: """Migration statistics and error tracking""" @@ -418,6 +424,351 @@ class MigrationTool: else: raise ValueError(f"Unsupported storage type: {storage_name}") + async def count_default_caches_json(self, storage) -> int: + """Count default caches in JsonKVStorage - O(N) but very fast in-memory + + Args: + storage: JsonKVStorage instance + + Returns: + Total count of cache records + """ + async with storage._storage_lock: + return sum( + 1 + for key in storage._data.keys() + if key.startswith("default:extract:") + or key.startswith("default:summary:") + ) + + async def count_default_caches_redis(self, storage) -> int: + """Count default caches in RedisKVStorage using SCAN with progress display + + Args: + storage: RedisKVStorage instance + + Returns: + Total count of cache records + """ + count = 0 + print("Scanning Redis keys...", end="", flush=True) + + async with storage._get_redis_connection() as redis: + for pattern in ["default:extract:*", "default:summary:*"]: + prefixed_pattern = f"{storage.final_namespace}:{pattern}" + cursor = 0 + while True: + cursor, keys = await redis.scan( + cursor, match=prefixed_pattern, count=DEFAULT_COUNT_BATCH_SIZE + ) + count += len(keys) + + # Show progress + print( + f"\rScanning Redis keys... found {count:,} records", + end="", + flush=True, + ) + + if cursor == 0: + break + + print() # New line after progress + return count + + async def count_default_caches_pg(self, storage) -> int: + """Count default caches in PostgreSQL using COUNT(*) with progress indicator + + Args: + storage: PGKVStorage instance + + Returns: + Total count of cache records + """ + from lightrag.kg.postgres_impl import namespace_to_table_name + + table_name = namespace_to_table_name(storage.namespace) + + query = f""" + SELECT COUNT(*) as count + FROM {table_name} + WHERE workspace = $1 + AND (id LIKE 'default:extract:%' OR id LIKE 'default:summary:%') + """ + + print("Counting PostgreSQL records...", end="", flush=True) + start_time = time.time() + + result = await storage.db.query(query, [storage.workspace]) + + elapsed = time.time() - start_time + if elapsed > 1: + print(f" (took {elapsed:.1f}s)", end="") + print() # New line + + return result["count"] if result else 0 + + async def count_default_caches_mongo(self, storage) -> int: + """Count default caches in MongoDB using count_documents with progress indicator + + Args: + storage: MongoKVStorage instance + + Returns: + Total count of cache records + """ + query = {"_id": {"$regex": "^default:(extract|summary):"}} + + print("Counting MongoDB documents...", end="", flush=True) + start_time = time.time() + + count = await storage._data.count_documents(query) + + elapsed = time.time() - start_time + if elapsed > 1: + print(f" (took {elapsed:.1f}s)", end="") + print() # New line + + return count + + async def count_default_caches(self, storage, storage_name: str) -> int: + """Count default caches from any storage type efficiently + + Args: + storage: Storage instance + storage_name: Storage type name + + Returns: + Total count of cache records + """ + if storage_name == "JsonKVStorage": + return await self.count_default_caches_json(storage) + elif storage_name == "RedisKVStorage": + return await self.count_default_caches_redis(storage) + elif storage_name == "PGKVStorage": + return await self.count_default_caches_pg(storage) + elif storage_name == "MongoKVStorage": + return await self.count_default_caches_mongo(storage) + else: + raise ValueError(f"Unsupported storage type: {storage_name}") + + async def stream_default_caches_json(self, storage, batch_size: int): + """Stream default caches from JsonKVStorage - yields batches + + Args: + storage: JsonKVStorage instance + batch_size: Size of each batch to yield + + Yields: + Dictionary batches of cache entries + """ + async with storage._storage_lock: + batch = {} + for key, value in storage._data.items(): + if key.startswith("default:extract:") or key.startswith( + "default:summary:" + ): + batch[key] = value + if len(batch) >= batch_size: + yield batch + batch = {} + # Yield remaining items + if batch: + yield batch + + async def stream_default_caches_redis(self, storage, batch_size: int): + """Stream default caches from RedisKVStorage - yields batches + + Args: + storage: RedisKVStorage instance + batch_size: Size of each batch to yield + + Yields: + Dictionary batches of cache entries + """ + import json + + async with storage._get_redis_connection() as redis: + for pattern in ["default:extract:*", "default:summary:*"]: + prefixed_pattern = f"{storage.final_namespace}:{pattern}" + cursor = 0 + + while True: + cursor, keys = await redis.scan( + cursor, match=prefixed_pattern, count=batch_size + ) + + if keys: + try: + pipe = redis.pipeline() + for key in keys: + pipe.get(key) + values = await pipe.execute() + + batch = {} + for key, value in zip(keys, values): + if value: + key_str = ( + key.decode() if isinstance(key, bytes) else key + ) + original_key = key_str.replace( + f"{storage.final_namespace}:", "", 1 + ) + batch[original_key] = json.loads(value) + + if batch: + yield batch + + except Exception as e: + print(f"⚠️ Pipeline execution failed for batch: {e}") + # Fall back to individual gets + batch = {} + for key in keys: + try: + value = await redis.get(key) + if value: + key_str = ( + key.decode() + if isinstance(key, bytes) + else key + ) + original_key = key_str.replace( + f"{storage.final_namespace}:", "", 1 + ) + batch[original_key] = json.loads(value) + except Exception as individual_error: + print( + f"⚠️ Failed to get individual key {key}: {individual_error}" + ) + continue + + if batch: + yield batch + + if cursor == 0: + break + + await asyncio.sleep(0) + + async def stream_default_caches_pg(self, storage, batch_size: int): + """Stream default caches from PostgreSQL - yields batches + + Args: + storage: PGKVStorage instance + batch_size: Size of each batch to yield + + Yields: + Dictionary batches of cache entries + """ + from lightrag.kg.postgres_impl import namespace_to_table_name + + table_name = namespace_to_table_name(storage.namespace) + offset = 0 + + while True: + query = f""" + SELECT id as key, original_prompt, return_value, chunk_id, cache_type, queryparam, + EXTRACT(EPOCH FROM create_time)::BIGINT as create_time, + EXTRACT(EPOCH FROM update_time)::BIGINT as update_time + FROM {table_name} + WHERE workspace = $1 + AND (id LIKE 'default:extract:%' OR id LIKE 'default:summary:%') + ORDER BY id + LIMIT $2 OFFSET $3 + """ + + results = await storage.db.query( + query, [storage.workspace, batch_size, offset], multirows=True + ) + + if not results: + break + + batch = {} + for row in results: + cache_entry = { + "return": row.get("return_value", ""), + "cache_type": row.get("cache_type"), + "original_prompt": row.get("original_prompt", ""), + "chunk_id": row.get("chunk_id"), + "queryparam": row.get("queryparam"), + "create_time": row.get("create_time", 0), + "update_time": row.get("update_time", 0), + } + batch[row["key"]] = cache_entry + + if batch: + yield batch + + if len(results) < batch_size: + break + + offset += batch_size + await asyncio.sleep(0) + + async def stream_default_caches_mongo(self, storage, batch_size: int): + """Stream default caches from MongoDB - yields batches + + Args: + storage: MongoKVStorage instance + batch_size: Size of each batch to yield + + Yields: + Dictionary batches of cache entries + """ + query = {"_id": {"$regex": "^default:(extract|summary):"}} + cursor = storage._data.find(query).batch_size(batch_size) + + batch = {} + async for doc in cursor: + doc_copy = doc.copy() + key = doc_copy.pop("_id") + + # Filter MongoDB/database-specific fields + for field_name in ["namespace", "workspace", "_id", "content"]: + doc_copy.pop(field_name, None) + + batch[key] = doc_copy + + if len(batch) >= batch_size: + yield batch + batch = {} + + # Yield remaining items + if batch: + yield batch + + async def stream_default_caches( + self, storage, storage_name: str, batch_size: int = None + ): + """Stream default caches from any storage type - unified interface + + Args: + storage: Storage instance + storage_name: Storage type name + batch_size: Size of each batch to yield (defaults to self.batch_size) + + Yields: + Dictionary batches of cache entries + """ + if batch_size is None: + batch_size = self.batch_size + + if storage_name == "JsonKVStorage": + async for batch in self.stream_default_caches_json(storage, batch_size): + yield batch + elif storage_name == "RedisKVStorage": + async for batch in self.stream_default_caches_redis(storage, batch_size): + yield batch + elif storage_name == "PGKVStorage": + async for batch in self.stream_default_caches_pg(storage, batch_size): + yield batch + elif storage_name == "MongoKVStorage": + async for batch in self.stream_default_caches_mongo(storage, batch_size): + yield batch + else: + raise ValueError(f"Unsupported storage type: {storage_name}") + async def count_cache_types(self, cache_data: Dict[str, Any]) -> Dict[str, int]: """Count cache entries by type @@ -452,43 +803,65 @@ class MigrationTool: for key, value in STORAGE_TYPES.items(): print(f"[{key}] {value}") - def get_user_choice(self, prompt: str, valid_choices: list) -> str: + def get_user_choice( + self, prompt: str, valid_choices: list, allow_exit: bool = False + ) -> str: """Get user choice with validation Args: prompt: Prompt message valid_choices: List of valid choices + allow_exit: If True, allow user to press Enter or input '0' to exit Returns: - User's choice + User's choice, or None if user chose to exit """ + exit_hint = " (Press Enter or 0 to exit)" if allow_exit else "" while True: - choice = input(f"\n{prompt}: ").strip() + choice = input(f"\n{prompt}{exit_hint}: ").strip() + + # Check for exit + if allow_exit and (choice == "" or choice == "0"): + return None + if choice in valid_choices: return choice print(f"✗ Invalid choice, please enter one of: {', '.join(valid_choices)}") - async def setup_storage(self, storage_type: str) -> tuple: + async def setup_storage( + self, storage_type: str, use_streaming: bool = False + ) -> tuple: """Setup and initialize storage Args: storage_type: Type label (source/target) + use_streaming: If True, only count records without loading. If False, load all data (legacy mode) Returns: - Tuple of (storage_instance, storage_name, workspace, cache_data) + Tuple of (storage_instance, storage_name, workspace, total_count) + Returns (None, None, None, 0) if user chooses to exit """ print(f"\n=== {storage_type} Storage Setup ===") - # Get storage type choice + # Get storage type choice - allow exit for source storage + allow_exit = storage_type == "Source" choice = self.get_user_choice( - f"Select {storage_type} storage type (1-4)", list(STORAGE_TYPES.keys()) + f"Select {storage_type} storage type (1-4)", + list(STORAGE_TYPES.keys()), + allow_exit=allow_exit, ) + + # Handle exit + if choice is None: + print("\n✓ Migration cancelled by user") + return None, None, None, 0 + storage_name = STORAGE_TYPES[choice] # Check environment variables print("\nChecking environment variables...") if not self.check_env_vars(storage_name): - return None, None, None, None + return None, None, None, 0 # Get workspace workspace = self.get_workspace_for_storage(storage_name) @@ -502,27 +875,34 @@ class MigrationTool: print("- Connection Status: ✓ Success") except Exception as e: print(f"✗ Initialization failed: {e}") - return None, None, None, None + return None, None, None, 0 - # Get cache data - print("\nCounting cache records...") + # Count cache records efficiently + print(f"\n{'Counting' if use_streaming else 'Loading'} cache records...") try: - cache_data = await self.get_default_caches(storage, storage_name) - counts = await self.count_cache_types(cache_data) + if use_streaming: + # Use efficient counting without loading data + total_count = await self.count_default_caches(storage, storage_name) + print(f"- Total: {total_count:,} records") + else: + # Legacy mode: load all data + cache_data = await self.get_default_caches(storage, storage_name) + counts = await self.count_cache_types(cache_data) + total_count = len(cache_data) - print(f"- default:extract: {counts['extract']:,} records") - print(f"- default:summary: {counts['summary']:,} records") - print(f"- Total: {len(cache_data):,} records") + print(f"- default:extract: {counts['extract']:,} records") + print(f"- default:summary: {counts['summary']:,} records") + print(f"- Total: {total_count:,} records") except Exception as e: - print(f"✗ Counting failed: {e}") - return None, None, None, None + print(f"✗ {'Counting' if use_streaming else 'Loading'} failed: {e}") + return None, None, None, 0 - return storage, storage_name, workspace, cache_data + return storage, storage_name, workspace, total_count async def migrate_caches( self, source_data: Dict[str, Any], target_storage, target_storage_name: str ) -> MigrationStats: - """Migrate caches in batches with error tracking + """Migrate caches in batches with error tracking (Legacy mode - loads all data) Args: source_data: Source cache data @@ -597,6 +977,98 @@ class MigrationTool: return stats + async def migrate_caches_streaming( + self, + source_storage, + source_storage_name: str, + target_storage, + target_storage_name: str, + total_records: int, + ) -> MigrationStats: + """Migrate caches using streaming approach - minimal memory footprint + + Args: + source_storage: Source storage instance + source_storage_name: Source storage type name + target_storage: Target storage instance + target_storage_name: Target storage type name + total_records: Total number of records to migrate + + Returns: + MigrationStats object with migration results and errors + """ + stats = MigrationStats() + stats.total_source_records = total_records + + if stats.total_source_records == 0: + print("\nNo records to migrate") + return stats + + # Calculate total batches + stats.total_batches = (total_records + self.batch_size - 1) // self.batch_size + + print("\n=== Starting Streaming Migration ===") + print( + f"💡 Memory-optimized mode: Processing {self.batch_size:,} records at a time\n" + ) + + batch_idx = 0 + + # Stream batches from source and write to target immediately + async for batch in self.stream_default_caches( + source_storage, source_storage_name + ): + batch_idx += 1 + + # Determine current cache type for display + if batch: + first_key = next(iter(batch.keys())) + cache_type = "extract" if "extract" in first_key else "summary" + else: + cache_type = "unknown" + + try: + # Write batch to target storage + await target_storage.upsert(batch) + + # Success - update stats + stats.successful_batches += 1 + stats.successful_records += len(batch) + + # Calculate progress with known total + progress = (stats.successful_records / total_records) * 100 + bar_length = 20 + filled_length = int( + bar_length * stats.successful_records // total_records + ) + bar = "█" * filled_length + "░" * (bar_length - filled_length) + + print( + f"Batch {batch_idx}/{stats.total_batches}: {bar} " + f"{stats.successful_records:,}/{total_records:,} ({progress:.1f}%) - " + f"default:{cache_type} ✓" + ) + + except Exception as e: + # Error - record and continue + stats.add_error(batch_idx, e, len(batch)) + + print( + f"Batch {batch_idx}/{stats.total_batches}: ✗ FAILED - " + f"{type(e).__name__}: {str(e)}" + ) + + # Final persist + print("\nPersisting data to disk...") + try: + await target_storage.index_done_callback() + print("✓ Data persisted successfully") + except Exception as e: + print(f"✗ Persist failed: {e}") + stats.add_error(0, e, 0) # batch 0 = persist error + + return stats + def print_migration_report(self, stats: MigrationStats): """Print comprehensive migration report @@ -660,41 +1132,42 @@ class MigrationTool: print("=" * 60) async def run(self): - """Run the migration tool""" + """Run the migration tool with streaming approach""" try: # Initialize shared storage (REQUIRED for storage classes to work) from lightrag.kg.shared_storage import initialize_share_data + initialize_share_data(workers=1) - + # Print header self.print_header() self.print_storage_types() - # Setup source storage + # Setup source storage with streaming (only count, don't load all data) ( self.source_storage, source_storage_name, self.source_workspace, - source_data, - ) = await self.setup_storage("Source") + source_count, + ) = await self.setup_storage("Source", use_streaming=True) - if not self.source_storage: - print("\n✗ Source storage setup failed") + # Check if user cancelled (setup_storage returns None for all fields) + if self.source_storage is None: return - if not source_data: + if source_count == 0: print("\n⚠ Source storage has no cache records to migrate") # Cleanup await self.source_storage.finalize() return - # Setup target storage + # Setup target storage with streaming (only count, don't load all data) ( self.target_storage, target_storage_name, self.target_workspace, - target_data, - ) = await self.setup_storage("Target") + target_count, + ) = await self.setup_storage("Target", use_streaming=True) if not self.target_storage: print("\n✗ Target storage setup failed") @@ -707,16 +1180,17 @@ class MigrationTool: print("Migration Confirmation") print("=" * 50) print( - f"Source: {source_storage_name} (workspace: {self.source_workspace if self.source_workspace else '(default)'}) - {len(source_data):,} records" + f"Source: {source_storage_name} (workspace: {self.source_workspace if self.source_workspace else '(default)'}) - {source_count:,} records" ) print( - f"Target: {target_storage_name} (workspace: {self.target_workspace if self.target_workspace else '(default)'}) - {len(target_data):,} records" + f"Target: {target_storage_name} (workspace: {self.target_workspace if self.target_workspace else '(default)'}) - {target_count:,} records" ) print(f"Batch Size: {self.batch_size:,} records/batch") + print("Memory Mode: Streaming (memory-optimized)") - if target_data: + if target_count > 0: print( - f"\n⚠️ Warning: Target storage already has {len(target_data):,} records" + f"\n⚠️ Warning: Target storage already has {target_count:,} records" ) print("Migration will overwrite records with the same keys") @@ -729,9 +1203,13 @@ class MigrationTool: await self.target_storage.finalize() return - # Perform migration with error tracking - stats = await self.migrate_caches( - source_data, self.target_storage, target_storage_name + # Perform streaming migration with error tracking + stats = await self.migrate_caches_streaming( + self.source_storage, + source_storage_name, + self.target_storage, + target_storage_name, + source_count, ) # Print comprehensive migration report @@ -760,10 +1238,11 @@ class MigrationTool: await self.target_storage.finalize() except Exception: pass - + # Finalize shared storage try: from lightrag.kg.shared_storage import finalize_share_data + finalize_share_data() except Exception: pass From 5be04263b2f81a147937ddc2c102869b9b521e17 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 19:58:36 +0800 Subject: [PATCH 20/62] Fix deadlock in JSON cache migration and prevent same storage selection - Snapshot JSON data before yielding batches - Release lock during batch processing - Exclude source type from target selection - Add detailed docstring for lock behavior - Filter available storage types properly --- lightrag/tools/migrate_llm_cache.py | 64 ++++++++++++++++++++++------- 1 file changed, 50 insertions(+), 14 deletions(-) diff --git a/lightrag/tools/migrate_llm_cache.py b/lightrag/tools/migrate_llm_cache.py index a339d985..4c147aae 100644 --- a/lightrag/tools/migrate_llm_cache.py +++ b/lightrag/tools/migrate_llm_cache.py @@ -561,20 +561,33 @@ class MigrationTool: Yields: Dictionary batches of cache entries + + Note: + This method creates a snapshot of matching items while holding the lock, + then releases the lock before yielding batches. This prevents deadlock + when the target storage (also JsonKVStorage) tries to acquire the same + lock during upsert operations. """ + # Create a snapshot of matching items while holding the lock async with storage._storage_lock: - batch = {} - for key, value in storage._data.items(): - if key.startswith("default:extract:") or key.startswith( - "default:summary:" - ): - batch[key] = value - if len(batch) >= batch_size: - yield batch - batch = {} - # Yield remaining items - if batch: + matching_items = [ + (key, value) + for key, value in storage._data.items() + if key.startswith("default:extract:") + or key.startswith("default:summary:") + ] + + # Now iterate over snapshot without holding lock + batch = {} + for key, value in matching_items: + batch[key] = value + if len(batch) >= batch_size: yield batch + batch = {} + + # Yield remaining items + if batch: + yield batch async def stream_default_caches_redis(self, storage, batch_size: int): """Stream default caches from RedisKVStorage - yields batches @@ -829,13 +842,17 @@ class MigrationTool: print(f"✗ Invalid choice, please enter one of: {', '.join(valid_choices)}") async def setup_storage( - self, storage_type: str, use_streaming: bool = False + self, + storage_type: str, + use_streaming: bool = False, + exclude_storage_name: str = None, ) -> tuple: """Setup and initialize storage Args: storage_type: Type label (source/target) use_streaming: If True, only count records without loading. If False, load all data (legacy mode) + exclude_storage_name: Storage type to exclude from selection (e.g., to prevent selecting same as source) Returns: Tuple of (storage_instance, storage_name, workspace, total_count) @@ -843,11 +860,27 @@ class MigrationTool: """ print(f"\n=== {storage_type} Storage Setup ===") + # Filter available storage types if exclusion is specified + available_types = STORAGE_TYPES.copy() + if exclude_storage_name: + # Remove the excluded storage type from available options + available_types = { + k: v for k, v in STORAGE_TYPES.items() if v != exclude_storage_name + } + + # Print available types + print("\nAvailable Storage Types for Target:") + for key, value in available_types.items(): + print(f"[{key}] {value}") + else: + # Print all storage types for source + self.print_storage_types() + # Get storage type choice - allow exit for source storage allow_exit = storage_type == "Source" choice = self.get_user_choice( f"Select {storage_type} storage type (1-4)", - list(STORAGE_TYPES.keys()), + list(available_types.keys()), allow_exit=allow_exit, ) @@ -1162,12 +1195,15 @@ class MigrationTool: return # Setup target storage with streaming (only count, don't load all data) + # Exclude source storage type from target selection ( self.target_storage, target_storage_name, self.target_workspace, target_count, - ) = await self.setup_storage("Target", use_streaming=True) + ) = await self.setup_storage( + "Target", use_streaming=True, exclude_storage_name=source_storage_name + ) if not self.target_storage: print("\n✗ Target storage setup failed") From b72632e4d4cfa5ead6896da59af8c93bfbd307c8 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 20:03:59 +0800 Subject: [PATCH 21/62] Add async generator lock management rule to cline extension --- .clinerules/01-basic.md | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/.clinerules/01-basic.md b/.clinerules/01-basic.md index 566a8159..955afa83 100644 --- a/.clinerules/01-basic.md +++ b/.clinerules/01-basic.md @@ -47,6 +47,31 @@ else np.frombuffer(base64.b64decode(dp.embedding), dtype=np.float32) **Location**: Neo4j storage finalization **Impact**: Prevents application shutdown failures +### 6. Async Generator Lock Management (CRITICAL) +**Pattern**: Never hold locks across async generator yields - create snapshots instead +**Issue**: Holding locks while yielding causes deadlock when consumers need the same lock +**Location**: `lightrag/tools/migrate_llm_cache.py` - `stream_default_caches_json` +**Solution**: Create snapshot of data while holding lock, release lock, then iterate over snapshot +```python +# WRONG - Deadlock prone: +async with storage._storage_lock: + for key, value in storage._data.items(): + batch[key] = value + if len(batch) >= batch_size: + yield batch # Lock still held! + +# CORRECT - Snapshot approach: +async with storage._storage_lock: + matching_items = [(k, v) for k, v in storage._data.items() if condition] +# Lock released here +for key, value in matching_items: + batch[key] = value + if len(batch) >= batch_size: + yield batch # No lock held +``` +**Impact**: Prevents deadlocks in Json→Json migrations and similar scenarios where source/target share locks +**Applicable To**: Any async generator that needs to access shared resources while yielding + ## Architecture Patterns ### 1. Dependency Injection From e95b02fb55d005c5c068a277064c48dbeddc9599 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 20:42:27 +0800 Subject: [PATCH 22/62] Refactor storage selection UI with dynamic numbering and inline prompts MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Remove standalone get_user_choice method • Add dynamic sequential numbering • Inline choice validation logic • Remove redundant storage type prints • Improve excluded storage handling --- lightrag/tools/migrate_llm_cache.py | 90 ++++++++++++++--------------- 1 file changed, 43 insertions(+), 47 deletions(-) diff --git a/lightrag/tools/migrate_llm_cache.py b/lightrag/tools/migrate_llm_cache.py index 4c147aae..165ea1f4 100644 --- a/lightrag/tools/migrate_llm_cache.py +++ b/lightrag/tools/migrate_llm_cache.py @@ -816,31 +816,6 @@ class MigrationTool: for key, value in STORAGE_TYPES.items(): print(f"[{key}] {value}") - def get_user_choice( - self, prompt: str, valid_choices: list, allow_exit: bool = False - ) -> str: - """Get user choice with validation - - Args: - prompt: Prompt message - valid_choices: List of valid choices - allow_exit: If True, allow user to press Enter or input '0' to exit - - Returns: - User's choice, or None if user chose to exit - """ - exit_hint = " (Press Enter or 0 to exit)" if allow_exit else "" - while True: - choice = input(f"\n{prompt}{exit_hint}: ").strip() - - # Check for exit - if allow_exit and (choice == "" or choice == "0"): - return None - - if choice in valid_choices: - return choice - print(f"✗ Invalid choice, please enter one of: {', '.join(valid_choices)}") - async def setup_storage( self, storage_type: str, @@ -860,36 +835,58 @@ class MigrationTool: """ print(f"\n=== {storage_type} Storage Setup ===") - # Filter available storage types if exclusion is specified - available_types = STORAGE_TYPES.copy() + # Filter and remap available storage types if exclusion is specified if exclude_storage_name: - # Remove the excluded storage type from available options - available_types = { - k: v for k, v in STORAGE_TYPES.items() if v != exclude_storage_name + # Get available storage types (excluding source) + available_list = [ + (k, v) for k, v in STORAGE_TYPES.items() if v != exclude_storage_name + ] + + # Remap to sequential numbering (1, 2, 3...) + remapped_types = { + str(i + 1): name for i, (_, name) in enumerate(available_list) } - # Print available types - print("\nAvailable Storage Types for Target:") - for key, value in available_types.items(): + # Print available types with new sequential numbers + print( + f"\nAvailable Storage Types for Target (source: {exclude_storage_name} excluded):" + ) + for key, value in remapped_types.items(): print(f"[{key}] {value}") + + available_types = remapped_types else: - # Print all storage types for source + # For source storage, use original numbering + available_types = STORAGE_TYPES.copy() self.print_storage_types() - # Get storage type choice - allow exit for source storage - allow_exit = storage_type == "Source" - choice = self.get_user_choice( - f"Select {storage_type} storage type (1-4)", - list(available_types.keys()), - allow_exit=allow_exit, - ) + # Generate dynamic prompt based on number of options + num_options = len(available_types) + if num_options == 1: + prompt_range = "1" + else: + prompt_range = f"1-{num_options}" - # Handle exit - if choice is None: - print("\n✓ Migration cancelled by user") - return None, None, None, 0 + # Custom input handling with exit support + while True: + choice = input( + f"\nSelect {storage_type} storage type ({prompt_range}) (Press Enter or 0 to exit): " + ).strip() - storage_name = STORAGE_TYPES[choice] + # Check for exit + if choice == "" or choice == "0": + print("\n✓ Migration cancelled by user") + return None, None, None, 0 + + # Check if choice is valid + if choice in available_types: + break + + print( + f"✗ Invalid choice. Please enter one of: {', '.join(available_types.keys())}" + ) + + storage_name = available_types[choice] # Check environment variables print("\nChecking environment variables...") @@ -1174,7 +1171,6 @@ class MigrationTool: # Print header self.print_header() - self.print_storage_types() # Setup source storage with streaming (only count, don't load all data) ( From 1864b282427e98c703656eaebc5fa4e1f54e0566 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 21:16:41 +0800 Subject: [PATCH 23/62] Add colored output formatting to migration confirmation display --- lightrag/tools/migrate_llm_cache.py | 33 +++++++++++++++++++++++++++-- 1 file changed, 31 insertions(+), 2 deletions(-) diff --git a/lightrag/tools/migrate_llm_cache.py b/lightrag/tools/migrate_llm_cache.py index 165ea1f4..db6933b2 100644 --- a/lightrag/tools/migrate_llm_cache.py +++ b/lightrag/tools/migrate_llm_cache.py @@ -65,6 +65,10 @@ DEFAULT_BATCH_SIZE = 1000 # Default count batch size for efficient counting DEFAULT_COUNT_BATCH_SIZE = 1000 +# ANSI color codes for terminal output +BOLD_CYAN = "\033[1;36m" +RESET = "\033[0m" + @dataclass class MigrationStats: @@ -816,6 +820,31 @@ class MigrationTool: for key, value in STORAGE_TYPES.items(): print(f"[{key}] {value}") + def format_workspace(self, workspace: str) -> str: + """Format workspace name with highlighting + + Args: + workspace: Workspace name (may be empty) + + Returns: + Formatted workspace string with ANSI color codes + """ + if workspace: + return f"{BOLD_CYAN}{workspace}{RESET}" + else: + return f"{BOLD_CYAN}(default){RESET}" + + def format_storage_name(self, storage_name: str) -> str: + """Format storage type name with highlighting + + Args: + storage_name: Storage type name + + Returns: + Formatted storage name string with ANSI color codes + """ + return f"{BOLD_CYAN}{storage_name}{RESET}" + async def setup_storage( self, storage_type: str, @@ -1212,10 +1241,10 @@ class MigrationTool: print("Migration Confirmation") print("=" * 50) print( - f"Source: {source_storage_name} (workspace: {self.source_workspace if self.source_workspace else '(default)'}) - {source_count:,} records" + f"Source: {self.format_storage_name(source_storage_name)} (workspace: {self.format_workspace(self.source_workspace)}) - {source_count:,} records" ) print( - f"Target: {target_storage_name} (workspace: {self.target_workspace if self.target_workspace else '(default)'}) - {target_count:,} records" + f"Target: {self.format_storage_name(target_storage_name)} (workspace: {self.format_workspace(self.target_workspace)}) - {target_count:,} records" ) print(f"Batch Size: {self.batch_size:,} records/batch") print("Memory Mode: Streaming (memory-optimized)") From 3d9de5ed032d0dbe54e530b5f39e952ed85103eb Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 22:10:09 +0800 Subject: [PATCH 24/62] feat: improve Gemini client error handling and retry logic MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Add google-api-core dependency • Add specific exception handling • Create InvalidResponseError class • Update retry decorators • Fix empty response handling --- lightrag/llm/gemini.py | 37 +++++++++++++++++++++++++++++++++--- pyproject.toml | 3 +++ requirements-offline-llm.txt | 1 + 3 files changed, 38 insertions(+), 3 deletions(-) diff --git a/lightrag/llm/gemini.py b/lightrag/llm/gemini.py index 3954e814..983d6b9f 100644 --- a/lightrag/llm/gemini.py +++ b/lightrag/llm/gemini.py @@ -33,18 +33,27 @@ from lightrag.utils import ( import pipmaster as pm -# Install the Google Gemini client on demand +# Install the Google Gemini client and its dependencies on demand if not pm.is_installed("google-genai"): pm.install("google-genai") +if not pm.is_installed("google-api-core"): + pm.install("google-api-core") from google import genai # type: ignore from google.genai import types # type: ignore +from google.api_core import exceptions as google_api_exceptions # type: ignore DEFAULT_GEMINI_ENDPOINT = "https://generativelanguage.googleapis.com" LOG = logging.getLogger(__name__) +class InvalidResponseError(Exception): + """Custom exception class for triggering retry mechanism when Gemini returns empty responses""" + + pass + + @lru_cache(maxsize=8) def _get_gemini_client( api_key: str, base_url: str | None, timeout: int | None = None @@ -176,6 +185,21 @@ def _extract_response_text( return ("\n".join(regular_parts), "\n".join(thought_parts)) +@retry( + stop=stop_after_attempt(3), + wait=wait_exponential(multiplier=1, min=4, max=60), + retry=( + retry_if_exception_type(google_api_exceptions.InternalServerError) + | retry_if_exception_type(google_api_exceptions.ServiceUnavailable) + | retry_if_exception_type(google_api_exceptions.ResourceExhausted) + | retry_if_exception_type(google_api_exceptions.GatewayTimeout) + | retry_if_exception_type(google_api_exceptions.BadGateway) + | retry_if_exception_type(google_api_exceptions.DeadlineExceeded) + | retry_if_exception_type(google_api_exceptions.Aborted) + | retry_if_exception_type(google_api_exceptions.Unknown) + | retry_if_exception_type(InvalidResponseError) + ), +) async def gemini_complete_if_cache( model: str, prompt: str, @@ -382,7 +406,7 @@ async def gemini_complete_if_cache( final_text = regular_text or "" if not final_text: - raise RuntimeError("Gemini response did not contain any text content.") + raise InvalidResponseError("Gemini response did not contain any text content.") if "\\u" in final_text: final_text = safe_unicode_decode(final_text.encode("utf-8")) @@ -434,7 +458,14 @@ async def gemini_model_complete( stop=stop_after_attempt(3), wait=wait_exponential(multiplier=1, min=4, max=60), retry=( - retry_if_exception_type(Exception) # Gemini uses generic exceptions + retry_if_exception_type(google_api_exceptions.InternalServerError) + | retry_if_exception_type(google_api_exceptions.ServiceUnavailable) + | retry_if_exception_type(google_api_exceptions.ResourceExhausted) + | retry_if_exception_type(google_api_exceptions.GatewayTimeout) + | retry_if_exception_type(google_api_exceptions.BadGateway) + | retry_if_exception_type(google_api_exceptions.DeadlineExceeded) + | retry_if_exception_type(google_api_exceptions.Aborted) + | retry_if_exception_type(google_api_exceptions.Unknown) ), ) async def gemini_embed( diff --git a/pyproject.toml b/pyproject.toml index aad54bc2..d0052b74 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,6 +24,7 @@ dependencies = [ "aiohttp", "configparser", "future", + "google-api-core>=2.0.0,<3.0.0", "google-genai>=1.0.0,<2.0.0", "json_repair", "nano-vectordb", @@ -60,6 +61,7 @@ api = [ "tenacity", "tiktoken", "xlsxwriter>=3.1.0", + "google-api-core>=2.0.0,<3.0.0", "google-genai>=1.0.0,<2.0.0", # API-specific dependencies "aiofiles", @@ -108,6 +110,7 @@ offline-llm = [ "aioboto3>=12.0.0,<16.0.0", "voyageai>=0.2.0,<1.0.0", "llama-index>=0.9.0,<1.0.0", + "google-api-core>=2.0.0,<3.0.0", "google-genai>=1.0.0,<2.0.0", ] diff --git a/requirements-offline-llm.txt b/requirements-offline-llm.txt index 4e8b7168..1539552a 100644 --- a/requirements-offline-llm.txt +++ b/requirements-offline-llm.txt @@ -10,6 +10,7 @@ # LLM provider dependencies (with version constraints matching pyproject.toml) aioboto3>=12.0.0,<16.0.0 anthropic>=0.18.0,<1.0.0 +google-api-core>=2.0.0,<3.0.0 google-genai>=1.0.0,<2.0.0 llama-index>=0.9.0,<1.0.0 ollama>=0.1.0,<1.0.0 From 1a91bcdb5f98e946760511c21c818ac4b5ec4181 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 22:48:49 +0800 Subject: [PATCH 25/62] Improve storage config validation and add config.ini fallback support MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Add MongoDB env requirements • Support config.ini fallback • Warn on missing env vars • Check available storage count • Show config source info --- lightrag/kg/__init__.py | 27 +++- lightrag/tools/migrate_llm_cache.py | 183 +++++++++++++++++++++++++--- 2 files changed, 189 insertions(+), 21 deletions(-) diff --git a/lightrag/kg/__init__.py b/lightrag/kg/__init__.py index 8d42441a..c62f7a3d 100644 --- a/lightrag/kg/__init__.py +++ b/lightrag/kg/__init__.py @@ -45,13 +45,19 @@ STORAGE_IMPLEMENTATIONS = { STORAGE_ENV_REQUIREMENTS: dict[str, list[str]] = { # KV Storage Implementations "JsonKVStorage": [], - "MongoKVStorage": [], + "MongoKVStorage": [ + "MONGO_URI", + "MONGO_DATABASE", + ], "RedisKVStorage": ["REDIS_URI"], "PGKVStorage": ["POSTGRES_USER", "POSTGRES_PASSWORD", "POSTGRES_DATABASE"], # Graph Storage Implementations "NetworkXStorage": [], "Neo4JStorage": ["NEO4J_URI", "NEO4J_USERNAME", "NEO4J_PASSWORD"], - "MongoGraphStorage": [], + "MongoGraphStorage": [ + "MONGO_URI", + "MONGO_DATABASE", + ], "MemgraphStorage": ["MEMGRAPH_URI"], "AGEStorage": [ "AGE_POSTGRES_DB", @@ -65,17 +71,26 @@ STORAGE_ENV_REQUIREMENTS: dict[str, list[str]] = { ], # Vector Storage Implementations "NanoVectorDBStorage": [], - "MilvusVectorDBStorage": [], - "ChromaVectorDBStorage": [], + "MilvusVectorDBStorage": [ + "MILVUS_URI", + "MILVUS_DB_NAME", + ], + # "ChromaVectorDBStorage": [], "PGVectorStorage": ["POSTGRES_USER", "POSTGRES_PASSWORD", "POSTGRES_DATABASE"], "FaissVectorDBStorage": [], "QdrantVectorDBStorage": ["QDRANT_URL"], # QDRANT_API_KEY has default value None - "MongoVectorDBStorage": [], + "MongoVectorDBStorage": [ + "MONGO_URI", + "MONGO_DATABASE", + ], # Document Status Storage Implementations "JsonDocStatusStorage": [], "RedisDocStatusStorage": ["REDIS_URI"], "PGDocStatusStorage": ["POSTGRES_USER", "POSTGRES_PASSWORD", "POSTGRES_DATABASE"], - "MongoDocStatusStorage": [], + "MongoDocStatusStorage": [ + "MONGO_URI", + "MONGO_DATABASE", + ], } # Storage implementation module mapping diff --git a/lightrag/tools/migrate_llm_cache.py b/lightrag/tools/migrate_llm_cache.py index db6933b2..43dfc9dc 100644 --- a/lightrag/tools/migrate_llm_cache.py +++ b/lightrag/tools/migrate_llm_cache.py @@ -128,27 +128,100 @@ class MigrationTool: workspace = os.getenv("WORKSPACE", "") return workspace - def check_env_vars(self, storage_name: str) -> bool: - """Check if all required environment variables exist + def check_config_ini_for_storage(self, storage_name: str) -> bool: + """Check if config.ini has configuration for the storage type Args: storage_name: Storage implementation name Returns: - True if all required env vars exist, False otherwise + True if config.ini has the necessary configuration + """ + try: + import configparser + + config = configparser.ConfigParser() + config.read("config.ini", "utf-8") + + if storage_name == "RedisKVStorage": + return config.has_option("redis", "uri") + elif storage_name == "PGKVStorage": + return ( + config.has_option("postgres", "user") + and config.has_option("postgres", "password") + and config.has_option("postgres", "database") + ) + elif storage_name == "MongoKVStorage": + return config.has_option("mongodb", "uri") and config.has_option( + "mongodb", "database" + ) + + return False + except Exception: + return False + + def check_env_vars(self, storage_name: str) -> bool: + """Check environment variables, show warnings if missing but don't fail + + Args: + storage_name: Storage implementation name + + Returns: + Always returns True (warnings only, no hard failure) """ required_vars = STORAGE_ENV_REQUIREMENTS.get(storage_name, []) + + if not required_vars: + print("✓ No environment variables required") + return True + missing_vars = [var for var in required_vars if var not in os.environ] if missing_vars: print( - f"✗ Missing required environment variables: {', '.join(missing_vars)}" + f"⚠️ Warning: Missing environment variables: {', '.join(missing_vars)}" ) - return False + + # Check if config.ini has configuration + has_config = self.check_config_ini_for_storage(storage_name) + if has_config: + print(" ✓ Found configuration in config.ini") + else: + print(f" Will attempt to use defaults for {storage_name}") + + return True print("✓ All required environment variables are set") return True + def count_available_storage_types(self) -> int: + """Count available storage types (with env vars, config.ini, or defaults) + + Returns: + Number of available storage types + """ + available_count = 0 + + for storage_name in STORAGE_TYPES.values(): + # Check if storage requires configuration + required_vars = STORAGE_ENV_REQUIREMENTS.get(storage_name, []) + + if not required_vars: + # JsonKVStorage, MongoKVStorage etc. - no config needed + available_count += 1 + else: + # Check if has environment variables + has_env = all(var in os.environ for var in required_vars) + if has_env: + available_count += 1 + else: + # Check if has config.ini configuration + has_config = self.check_config_ini_for_storage(storage_name) + if has_config: + available_count += 1 + + return available_count + def get_storage_class(self, storage_name: str): """Dynamically import and return storage class @@ -178,7 +251,7 @@ class MigrationTool: raise ValueError(f"Unsupported storage type: {storage_name}") async def initialize_storage(self, storage_name: str, workspace: str): - """Initialize storage instance + """Initialize storage instance with fallback to config.ini and defaults Args: storage_name: Storage implementation name @@ -186,6 +259,9 @@ class MigrationTool: Returns: Initialized storage instance + + Raises: + Exception: If initialization fails """ storage_class = self.get_storage_class(storage_name) @@ -203,7 +279,7 @@ class MigrationTool: embedding_func=None, ) - # Initialize the storage + # Initialize the storage (may raise exception if connection fails) await storage.initialize() return storage @@ -851,7 +927,7 @@ class MigrationTool: use_streaming: bool = False, exclude_storage_name: str = None, ) -> tuple: - """Setup and initialize storage + """Setup and initialize storage with config.ini fallback support Args: storage_type: Type label (source/target) @@ -917,23 +993,76 @@ class MigrationTool: storage_name = available_types[choice] - # Check environment variables - print("\nChecking environment variables...") - if not self.check_env_vars(storage_name): - return None, None, None, 0 + # Check configuration (warnings only, doesn't block) + print("\nChecking configuration...") + self.check_env_vars(storage_name) # Get workspace workspace = self.get_workspace_for_storage(storage_name) - # Initialize storage + # Initialize storage (real validation point) print(f"\nInitializing {storage_type} storage...") try: storage = await self.initialize_storage(storage_name, workspace) print(f"- Storage Type: {storage_name}") print(f"- Workspace: {workspace if workspace else '(default)'}") print("- Connection Status: ✓ Success") + + # Show configuration source for transparency + if storage_name == "RedisKVStorage": + config_source = ( + "environment variable" + if "REDIS_URI" in os.environ + else "config.ini or default" + ) + print(f"- Configuration Source: {config_source}") + elif storage_name == "PGKVStorage": + config_source = ( + "environment variables" + if all( + var in os.environ + for var in STORAGE_ENV_REQUIREMENTS[storage_name] + ) + else "config.ini or defaults" + ) + print(f"- Configuration Source: {config_source}") + elif storage_name == "MongoKVStorage": + config_source = ( + "environment variables" + if all( + var in os.environ + for var in STORAGE_ENV_REQUIREMENTS[storage_name] + ) + else "config.ini or defaults" + ) + print(f"- Configuration Source: {config_source}") + except Exception as e: print(f"✗ Initialization failed: {e}") + print(f"\nFor {storage_name}, you can configure using:") + print(" 1. Environment variables (highest priority)") + + # Show specific environment variable requirements + if storage_name in STORAGE_ENV_REQUIREMENTS: + for var in STORAGE_ENV_REQUIREMENTS[storage_name]: + print(f" - {var}") + + print(" 2. config.ini file (medium priority)") + if storage_name == "RedisKVStorage": + print(" [redis]") + print(" uri = redis://localhost:6379") + elif storage_name == "PGKVStorage": + print(" [postgres]") + print(" host = localhost") + print(" port = 5432") + print(" user = postgres") + print(" password = yourpassword") + print(" database = lightrag") + elif storage_name == "MongoKVStorage": + print(" [mongodb]") + print(" uri = mongodb://root:root@localhost:27017/") + print(" database = LightRAG") + return None, None, None, 0 # Count cache records efficiently @@ -1191,7 +1320,7 @@ class MigrationTool: print("=" * 60) async def run(self): - """Run the migration tool with streaming approach""" + """Run the migration tool with streaming approach and early validation""" try: # Initialize shared storage (REQUIRED for storage classes to work) from lightrag.kg.shared_storage import initialize_share_data @@ -1213,8 +1342,32 @@ class MigrationTool: if self.source_storage is None: return + # Check if there are at least 2 storage types available + available_count = self.count_available_storage_types() + if available_count <= 1: + print("\n" + "=" * 60) + print("⚠️ Warning: Migration Not Possible") + print("=" * 60) + print(f"Only {available_count} storage type(s) available.") + print("Migration requires at least 2 different storage types.") + print("\nTo enable migration, configure additional storage:") + print(" 1. Set environment variables, OR") + print(" 2. Update config.ini file") + print("\nSupported storage types:") + for name in STORAGE_TYPES.values(): + if name != source_storage_name: + print(f" - {name}") + if name in STORAGE_ENV_REQUIREMENTS: + for var in STORAGE_ENV_REQUIREMENTS[name]: + print(f" Required: {var}") + print("=" * 60) + + # Cleanup + await self.source_storage.finalize() + return + if source_count == 0: - print("\n⚠ Source storage has no cache records to migrate") + print("\n⚠️ Source storage has no cache records to migrate") # Cleanup await self.source_storage.finalize() return From 987bc09cabee3525cbc6d59dd2a77e866338c841 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sat, 8 Nov 2025 23:48:19 +0800 Subject: [PATCH 26/62] Update LLM cache migration docs and improve UX prompts --- ...{README.md => README_EVALUASTION_RAGAS.md} | 0 lightrag/tools/README_MIGRATE_LLM_CACHE.md | 249 +++++++++++------- lightrag/tools/migrate_llm_cache.py | 2 +- 3 files changed, 153 insertions(+), 98 deletions(-) rename lightrag/evaluation/{README.md => README_EVALUASTION_RAGAS.md} (100%) diff --git a/lightrag/evaluation/README.md b/lightrag/evaluation/README_EVALUASTION_RAGAS.md similarity index 100% rename from lightrag/evaluation/README.md rename to lightrag/evaluation/README_EVALUASTION_RAGAS.md diff --git a/lightrag/tools/README_MIGRATE_LLM_CACHE.md b/lightrag/tools/README_MIGRATE_LLM_CACHE.md index b06efa5b..8dd72984 100644 --- a/lightrag/tools/README_MIGRATE_LLM_CACHE.md +++ b/lightrag/tools/README_MIGRATE_LLM_CACHE.md @@ -17,59 +17,11 @@ The tool migrates the following cache types: - `default:extract:*` - Entity and relationship extraction caches - `default:summary:*` - Entity and relationship summary caches -**Note**: Query caches (modes like `local`, `global`, etc.) are NOT migrated. +**Note**: Query caches (modes like `mix`,`local`, `global`, etc.) are NOT migrated. ## Prerequisites -### 1. Environment Variable Configuration - -Ensure the relevant storage environment variables are configured in your `.env` file: - -#### Workspace Configuration (Optional) -```bash -# Generic workspace (shared by all storages) -WORKSPACE=space1 - -# Or configure independent workspace for specific storage -POSTGRES_WORKSPACE=pg_space -MONGODB_WORKSPACE=mongo_space -REDIS_WORKSPACE=redis_space -``` - -**Workspace Priority**: Storage-specific > Generic WORKSPACE > Empty string - -#### JsonKVStorage -```bash -WORKING_DIR=./rag_storage -``` - -#### RedisKVStorage -```bash -REDIS_URI=redis://localhost:6379 -``` - -#### PGKVStorage -```bash -POSTGRES_HOST=localhost -POSTGRES_PORT=5432 -POSTGRES_USER=your_username -POSTGRES_PASSWORD=your_password -POSTGRES_DATABASE=your_database -``` - -#### MongoKVStorage -```bash -MONGO_URI=mongodb://root:root@localhost:27017/ -MONGO_DATABASE=LightRAG -``` - -### 2. Install Dependencies - -Ensure LightRAG and its dependencies are installed: - -```bash -pip install -r requirements.txt -``` +The LLM Cache Migration Tool reads the storage configuration of the LightRAG Server and provides an LLM migration option to select source and destination storage. Ensure that both the source and destination storage have been correctly configured and are accessible via the LightRAG Server before cache migration. ## Usage @@ -95,10 +47,10 @@ Supported KV Storage Types: [3] PGKVStorage [4] MongoKVStorage -Select Source storage type (1-4) (Press Enter or 0 to exit): 1 +Select Source storage type (1-4) (Press Enter to exit): 1 ``` -**Note**: You can press Enter or type `0` at the source storage selection to exit gracefully. +**Note**: You can press Enter or type `0` at any storage selection prompt to exit gracefully. #### 2. Source Storage Validation The tool will: @@ -121,23 +73,43 @@ Counting cache records... ``` **Progress Display by Storage Type:** -- **JsonKVStorage**: Fast in-memory counting, no progress display needed -- **RedisKVStorage**: Real-time scanning progress +- **JsonKVStorage**: Fast in-memory counting, displays final count without incremental progress + ``` + Counting cache records... + - Total: 8,734 records + ``` +- **RedisKVStorage**: Real-time scanning progress with incremental counts ``` Scanning Redis keys... found 8,734 records ``` -- **PostgreSQL**: Shows timing if operation takes >1 second +- **PostgreSQL**: Quick COUNT(*) query, shows timing only if operation takes >1 second ``` Counting PostgreSQL records... (took 2.3s) ``` -- **MongoDB**: Shows timing if operation takes >1 second +- **MongoDB**: Fast count_documents(), shows timing only if operation takes >1 second ``` Counting MongoDB documents... (took 1.8s) ``` #### 3. Select Target Storage Type -Repeat steps 1-2 to select and validate the target storage. +The tool automatically excludes the source storage type from the target selection and renumbers the remaining options sequentially: + +``` +Available Storage Types for Target (source: JsonKVStorage excluded): +[1] RedisKVStorage +[2] PGKVStorage +[3] MongoKVStorage + +Select Target storage type (1-3) (Press Enter or 0 to exit): 1 +``` + +**Important Notes:** +- You **cannot** select the same storage type for both source and target +- Options are automatically renumbered (e.g., [1], [2], [3] instead of [2], [3], [4]) +- You can press Enter or type `0` to exit at this point as well + +The tool then validates the target storage following the same process as the source (checking environment variables, initializing connection, counting records). #### 4. Confirm Migration @@ -147,8 +119,9 @@ Migration Confirmation Source: JsonKVStorage (workspace: space1) - 8,734 records Target: MongoKVStorage (workspace: space1) - 0 records Batch Size: 1,000 records/batch +Memory Mode: Streaming (memory-optimized) -⚠ Warning: Target storage already has 0 records +⚠️ Warning: Target storage already has 0 records Migration will overwrite records with the same keys Continue? (y/n): y @@ -156,18 +129,27 @@ Continue? (y/n): y #### 5. Execute Migration -Observe migration progress: +The tool uses **streaming migration** by default for memory efficiency. Observe migration progress: ``` -=== Starting Migration === -Batch 1/9: ████████░░ 1000/8734 (11%) - default:extract -Batch 2/9: ████████████████░░ 2000/8734 (23%) - default:extract +=== Starting Streaming Migration === +💡 Memory-optimized mode: Processing 1,000 records at a time + +Batch 1/9: ████████░░░░░░░░░░░░ 1000/8734 (11.4%) - default:extract ✓ +Batch 2/9: ████████████░░░░░░░░ 2000/8734 (22.9%) - default:extract ✓ ... -Batch 9/9: ████████████████████ 8734/8734 (100%) - default:summary +Batch 9/9: ████████████████████ 8734/8734 (100.0%) - default:summary ✓ Persisting data to disk... +✓ Data persisted successfully ``` +**Key Features:** +- **Streaming mode**: Processes data in batches without loading entire dataset into memory +- **Real-time progress**: Shows progress bar with precise percentage and cache type +- **Success indicators**: ✓ for successful batches, ✗ for failed batches +- **Constant memory usage**: Handles millions of records efficiently + #### 6. Review Migration Report The tool provides a comprehensive final report showing statistics and any errors encountered: @@ -290,24 +272,96 @@ After migration completes, a detailed report includes: 1. **Data Overwrite Warning** - Migration will overwrite records with the same keys in the target storage - Tool displays a warning if target storage already has data + - Data migration can be performed repeatedly - Pre-existing data in target storage is handled correctly - -2. **Workspace Consistency** - - Recommended to use the same workspace for source and target - - Cache data in different workspaces are completely isolated - 3. **Interrupt and Resume** - Migration can be interrupted at any time (Ctrl+C) - Already migrated data will remain in target storage - Re-running will overwrite existing records - Failed batches can be manually retried - 4. **Performance Considerations** - Large data migration may take considerable time - Recommend migrating during off-peak hours - Ensure stable network connection (for remote databases) - Memory usage stays constant regardless of dataset size +## Storage Configuration + +The tool supports multiple configuration methods with the following priority: + +1. **Environment variables** (highest priority) +2. **config.ini file** (medium priority) +3. **Default values** (lowest priority) + +#### Option A: Environment Variable Configuration + +Configure storage settings in your `.env` file: + +#### Workspace Configuration (Optional) + +```bash +# Generic workspace (shared by all storages) +WORKSPACE=space1 + +# Or configure independent workspace for specific storage +POSTGRES_WORKSPACE=pg_space +MONGODB_WORKSPACE=mongo_space +REDIS_WORKSPACE=redis_space +``` + +**Workspace Priority**: Storage-specific > Generic WORKSPACE > Empty string + +#### JsonKVStorage + +```bash +WORKING_DIR=./rag_storage +``` + +#### RedisKVStorage + +```bash +REDIS_URI=redis://localhost:6379 +``` + +#### PGKVStorage + +```bash +POSTGRES_HOST=localhost +POSTGRES_PORT=5432 +POSTGRES_USER=your_username +POSTGRES_PASSWORD=your_password +POSTGRES_DATABASE=your_database +``` + +#### MongoKVStorage + +```bash +MONGO_URI=mongodb://root:root@localhost:27017/ +MONGO_DATABASE=LightRAG +``` + +#### Option B: config.ini Configuration + +Alternatively, create a `config.ini` file in the project root: + +```ini +[redis] +uri = redis://localhost:6379 + +[postgres] +host = localhost +port = 5432 +user = postgres +password = yourpassword +database = lightrag + +[mongodb] +uri = mongodb://root:root@localhost:27017/ +database = LightRAG +``` + +**Note**: Environment variables take precedence over config.ini settings. JsonKVStorage uses `WORKING_DIR` environment variable or defaults to `./rag_storage`. + ## Troubleshooting ### Missing Environment Variables @@ -345,22 +399,12 @@ MONGO_DATABASE=LightRAG # 2. Run tool python -m lightrag.tools.migrate_llm_cache -# 3. Select: 1 (JsonKVStorage) -> 4 (MongoKVStorage) +# 3. Select: 1 (JsonKVStorage) -> 1 (MongoKVStorage - renumbered from 4) ``` -### Scenario 2: PostgreSQL Database Switch +**Note**: After selecting JsonKVStorage as source, MongoKVStorage will be shown as option [1] in the target selection since options are renumbered after excluding the source. -Use case: Database migration or upgrade - -```bash -# 1. Configure old and new databases -POSTGRES_WORKSPACE=old_db # Source -# ... Configure new database as default - -# 2. Run tool and select same storage type -``` - -### Scenario 3: Redis to PostgreSQL +### Scenario 2: Redis to PostgreSQL Use case: Migrating from cache storage to relational database @@ -373,20 +417,38 @@ POSTGRES_HOST=new-postgres-server # 2. Run tool python -m lightrag.tools.migrate_llm_cache -# 3. Select: 2 (RedisKVStorage) -> 3 (PGKVStorage) +# 3. Select: 2 (RedisKVStorage) -> 2 (PGKVStorage - renumbered from 3) ``` +**Note**: After selecting RedisKVStorage as source, PGKVStorage will be shown as option [2] in the target selection. + +### Scenario 3: Different Workspaces Migration + +Use case: Migrating data between different workspace environments + +```bash +# Configure separate workspaces for source and target +POSTGRES_WORKSPACE=dev_workspace # For development environment +MONGODB_WORKSPACE=prod_workspace # For production environment + +# Run tool +python -m lightrag.tools.migrate_llm_cache + +# Select: 3 (PGKVStorage with dev_workspace) -> 3 (MongoKVStorage with prod_workspace) +``` + +**Note**: This allows you to migrate between different logical data partitions while changing storage backends. + ## Tool Limitations -1. **Only Default Mode Caches** +1. **Same Storage Type Not Allowed** + - You cannot migrate between the same storage type (e.g., PostgreSQL to PostgreSQL) + - This is enforced by the tool automatically excluding the source storage type from target selection + - For same-storage migrations (e.g., database switches), use database-native tools instead +2. **Only Default Mode Caches** - Only migrates `default:extract:*` and `default:summary:*` - Query caches are not included - -2. **Workspace Isolation** - - Different workspaces are treated as completely separate - - Cross-workspace migration requires manual workspace reconfiguration - -3. **Network Dependency** +4. **Network Dependency** - Tool requires stable network connection for remote databases - Large datasets may fail if connection is interrupted @@ -407,10 +469,3 @@ python -m lightrag.tools.migrate_llm_cache 4. **Clean Old Data** - After successful migration, consider cleaning old cache data - Keep backups for a reasonable period before deletion - -## Support - -For issues or questions: -- Check LightRAG documentation -- Review error logs for detailed information -- Ensure all environment variables are correctly configured diff --git a/lightrag/tools/migrate_llm_cache.py b/lightrag/tools/migrate_llm_cache.py index 43dfc9dc..942f244c 100644 --- a/lightrag/tools/migrate_llm_cache.py +++ b/lightrag/tools/migrate_llm_cache.py @@ -975,7 +975,7 @@ class MigrationTool: # Custom input handling with exit support while True: choice = input( - f"\nSelect {storage_type} storage type ({prompt_range}) (Press Enter or 0 to exit): " + f"\nSelect {storage_type} storage type ({prompt_range}) (Press Enter to exit): " ).strip() # Check for exit From a75efb06dcb6a783bfb39e039d2f4de53e162754 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 00:02:19 +0800 Subject: [PATCH 27/62] Fix: prevent source data corruption by target upsert function MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Prevent mutations bugs by using copy() when storing cache values • Protect filtered cache data and ensure batch data isolation --- lightrag/tools/migrate_llm_cache.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/lightrag/tools/migrate_llm_cache.py b/lightrag/tools/migrate_llm_cache.py index 942f244c..b0d4823c 100644 --- a/lightrag/tools/migrate_llm_cache.py +++ b/lightrag/tools/migrate_llm_cache.py @@ -300,7 +300,7 @@ class MigrationTool: if key.startswith("default:extract:") or key.startswith( "default:summary:" ): - filtered[key] = value + filtered[key] = value.copy() return filtered async def get_default_caches_redis( @@ -475,7 +475,7 @@ class MigrationTool: for field_name in ["namespace", "workspace", "_id", "content"]: doc_copy.pop(field_name, None) - cache_data[key] = doc_copy + cache_data[key] = doc_copy.copy() # Periodically yield control (every batch_size documents) if len(cache_data) % batch_size == 0: @@ -660,7 +660,7 @@ class MigrationTool: # Now iterate over snapshot without holding lock batch = {} for key, value in matching_items: - batch[key] = value + batch[key] = value.copy() if len(batch) >= batch_size: yield batch batch = {} @@ -821,7 +821,7 @@ class MigrationTool: for field_name in ["namespace", "workspace", "_id", "content"]: doc_copy.pop(field_name, None) - batch[key] = doc_copy + batch[key] = doc_copy.copy() if len(batch) >= batch_size: yield batch From 754d2ad297c6cf43ad150775b55f85b9deb1c019 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 00:41:07 +0800 Subject: [PATCH 28/62] Add documentation for LLM cache migration between storage types --- lightrag/api/README-zh.md | 4 ++++ lightrag/api/README.md | 4 ++++ 2 files changed, 8 insertions(+) diff --git a/lightrag/api/README-zh.md b/lightrag/api/README-zh.md index bd2bbd62..91e4c54d 100644 --- a/lightrag/api/README-zh.md +++ b/lightrag/api/README-zh.md @@ -400,6 +400,10 @@ LIGHTRAG_DOC_STATUS_STORAGE=PGDocStatusStorage 在向 LightRAG 添加文档后，您不能更改存储实现选择。目前尚不支持从一个存储实现迁移到另一个存储实现。更多配置信息请阅读示例 `env.exampl`e文件。 +### 在不同存储类型之间迁移LLM缓存 + +当LightRAG更换存储实现方式的时候，可以LLM缓存从就的存储迁移到新的存储。先以后在新的存储上重新上传文件时，将利用利用原有存储的LLM缓存大幅度加快文件处理的速度。LLM缓存迁移工具的使用方法请参考[README_MIGRATE_LLM_CACHE.md](../tools/README_MIGRATE_LLM_CACHE.md) + ### LightRag API 服务器命令行选项 | 参数 | 默认值 | 描述 | diff --git a/lightrag/api/README.md b/lightrag/api/README.md index f62e24d3..690d9ac9 100644 --- a/lightrag/api/README.md +++ b/lightrag/api/README.md @@ -410,6 +410,10 @@ LIGHTRAG_DOC_STATUS_STORAGE=PGDocStatusStorage You cannot change storage implementation selection after adding documents to LightRAG. Data migration from one storage implementation to another is not supported yet. For further information, please read the sample env file or config.ini file. +### LLM Cache Migration Between Storage Types + +When switching the storage implementation in LightRAG, the LLM cache can be migrated from the existing storage to the new one. Subsequently, when re-uploading files to the new storage, the pre-existing LLM cache will significantly accelerate file processing. For detailed instructions on using the LLM cache migration tool, please refer to[README_MIGRATE_LLM_CACHE.md](../tools/README_MIGRATE_LLM_CACHE.md) + ### LightRAG API Server Command Line Options | Parameter | Default | Description | From 1334b3d896e24141c3085cdcce111974afaebb17 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 02:32:30 +0800 Subject: [PATCH 29/62] Update uv.lock --- uv.lock | 1239 ++++++++++++++++++++++++++++++++++++++++++++++++++++++- 1 file changed, 1232 insertions(+), 7 deletions(-) diff --git a/uv.lock b/uv.lock index f45c5717..003d86c4 100644 --- a/uv.lock +++ b/uv.lock @@ -277,6 +277,15 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/15/b3/9b1a8074496371342ec1e796a96f99c82c945a339cd81a8e73de28b4cf9e/anyio-4.11.0-py3-none-any.whl", hash = "sha256:0287e96f4d26d4149305414d4e3bc32f0dcd0862365a4bddea19d7a1ec38c4fc", size = 109097, upload-time = "2025-09-23T09:19:10.601Z" }, ] +[[package]] +name = "appdirs" +version = "1.4.4" +source = { 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"zstandard" version = "0.25.0" From 80f2e691fc7a19ee5d220f88a04f4c334b39763d Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 02:48:11 +0800 Subject: [PATCH 30/62] =?UTF-8?q?Remove=20redundant=20i18n=20import=20trig?= =?UTF-8?q?gered=20the=20Vite=20=E2=80=9Cdynamic=20+=20static=20import?= =?UTF-8?q?=E2=80=9D=20warning?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- lightrag_webui/src/stores/settings.ts | 6 ------ 1 file changed, 6 deletions(-) diff --git a/lightrag_webui/src/stores/settings.ts b/lightrag_webui/src/stores/settings.ts index 983f5c43..966a2504 100644 --- a/lightrag_webui/src/stores/settings.ts +++ b/lightrag_webui/src/stores/settings.ts @@ -141,12 +141,6 @@ const useSettingsStoreBase = create()( setLanguage: (language: Language) => { set({ language }) - // Update i18n after state is updated - import('i18next').then(({ default: i18n }) => { - if (i18n.language !== language) { - i18n.changeLanguage(language) - } - }) }, setGraphLayoutMaxIterations: (iterations: number) => From 7bc6ccea19132abc1d4d888fab201735554b6b4c Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 04:31:07 +0800 Subject: [PATCH 31/62] Add uv package manager support to installation docs --- README-zh.md | 35 +++++++++++++++++++++++++++++------ README.md | 37 ++++++++++++++++++++++++++++++------- lightrag/api/README-zh.md | 26 +++++++++++++++++--------- lightrag/api/README.md | 20 ++++++++++++++------ 4 files changed, 90 insertions(+), 28 deletions(-) diff --git a/README-zh.md b/README-zh.md index 148e7907..f4020e1f 100644 --- a/README-zh.md +++ b/README-zh.md @@ -90,6 +90,11 @@ ## 安装 +> **💡 使用 uv 进行包管理**: 本项目使用 [uv](https://docs.astral.sh/uv/) 进行快速可靠的 Python 包管理。 +> 首先安装 uv: `curl -LsSf https://astral.sh/uv/install.sh | sh` (Unix/macOS) 或 `powershell -c "irm https://astral.sh/uv/install.ps1 | iex"` (Windows) +> +> **注意**: 如果您更喜欢使用 pip 也可以，但我们推荐使用 uv 以获得更好的性能和更可靠的依赖管理。 + ### 安装LightRAG服务器 LightRAG服务器旨在提供Web UI和API支持。Web UI便于文档索引、知识图谱探索和简单的RAG查询界面。LightRAG服务器还提供兼容Ollama的接口，旨在将LightRAG模拟为Ollama聊天模型。这使得AI聊天机器人（如Open WebUI）可以轻松访问LightRAG。 @@ -97,7 +102,11 @@ LightRAG服务器旨在提供Web UI和API支持。Web UI便于文档索引、知 * 从PyPI安装 ```bash -pip install "lightrag-hku[api]" +# 使用 uv (推荐) +uv pip install "lightrag-hku[api]" +# 或使用 pip +# pip install "lightrag-hku[api]" + cp env.example .env lightrag-server ``` @@ -107,9 +116,17 @@ lightrag-server ```bash git clone https://github.com/HKUDS/LightRAG.git cd LightRAG -# 如有必要，创建Python虚拟环境 -# 以可开发（编辑）模式安装LightRAG服务器 -pip install -e ".[api]" + +# 使用 uv (推荐) +# 注意: uv sync 会自动在 .venv/ 目录创建虚拟环境 +uv sync --extra api +source .venv/bin/activate # 激活虚拟环境 (Linux/macOS) +# Windows 系统: .venv\Scripts\activate + +# 或使用 pip 和虚拟环境 +# python -m venv .venv +# source .venv/bin/activate # Windows: .venv\Scripts\activate +# pip install -e ".[api]" cp env.example .env # 使用你的LLM和Embedding模型访问参数更新.env文件 @@ -140,13 +157,19 @@ docker compose up ```bash cd LightRAG -pip install -e . +# 注意: uv sync 会自动在 .venv/ 目录创建虚拟环境 +uv sync +source .venv/bin/activate # 激活虚拟环境 (Linux/macOS) +# Windows 系统: .venv\Scripts\activate + +# 或: pip install -e . ``` * 从PyPI安装 ```bash -pip install lightrag-hku +uv pip install lightrag-hku +# 或: pip install lightrag-hku ``` ## 快速开始 diff --git a/README.md b/README.md index 7a366c05..64921dbc 100644 --- a/README.md +++ b/README.md @@ -88,6 +88,11 @@ ## Installation +> **💡 Using uv for Package Management**: This project uses [uv](https://docs.astral.sh/uv/) for fast and reliable Python package management. +> Install uv first: `curl -LsSf https://astral.sh/uv/install.sh | sh` (Unix/macOS) or `powershell -c "irm https://astral.sh/uv/install.ps1 | iex"` (Windows) +> +> **Note**: You can also use pip if you prefer, but uv is recommended for better performance and more reliable dependency management. +> > **📦 Offline Deployment**: For offline or air-gapped environments, see the [Offline Deployment Guide](./docs/OfflineDeployment.md) for instructions on pre-installing all dependencies and cache files. ### Install LightRAG Server @@ -97,7 +102,11 @@ The LightRAG Server is designed to provide Web UI and API support. The Web UI fa * Install from PyPI ```bash -pip install "lightrag-hku[api]" +# Using uv (recommended) +uv pip install "lightrag-hku[api]" +# Or using pip +# pip install "lightrag-hku[api]" + cp env.example .env lightrag-server ``` @@ -107,9 +116,17 @@ lightrag-server ```bash git clone https://github.com/HKUDS/LightRAG.git cd LightRAG -# Create a Python virtual enviroment if neccesary -# Install in editable mode with API support -pip install -e ".[api]" + +# Using uv (recommended) +# Note: uv sync automatically creates a virtual environment in .venv/ +uv sync --extra api +source .venv/bin/activate # Activate the virtual environment (Linux/macOS) +# Or on Windows: .venv\Scripts\activate + +# Or using pip with virtual environment +# python -m venv .venv +# source .venv/bin/activate # Windows: .venv\Scripts\activate +# pip install -e ".[api]" cp env.example .env # Update the .env with your LLM and embedding configurations @@ -136,17 +153,23 @@ docker compose up ### Install LightRAG Core -* Install from source (Recommend) +* Install from source (Recommended) ```bash cd LightRAG -pip install -e . +# Note: uv sync automatically creates a virtual environment in .venv/ +uv sync +source .venv/bin/activate # Activate the virtual environment (Linux/macOS) +# Or on Windows: .venv\Scripts\activate + +# Or: pip install -e . ``` * Install from PyPI ```bash -pip install lightrag-hku +uv pip install lightrag-hku +# Or: pip install lightrag-hku ``` ## Quick Start diff --git a/lightrag/api/README-zh.md b/lightrag/api/README-zh.md index 91e4c54d..3b12f265 100644 --- a/lightrag/api/README-zh.md +++ b/lightrag/api/README-zh.md @@ -15,26 +15,34 @@ LightRAG 服务器旨在提供 Web 界面和 API 支持。Web 界面便于文档 * 从 PyPI 安装 ```bash -pip install "lightrag-hku[api]" +# 使用 uv (推荐) +uv pip install "lightrag-hku[api]" + +# 或使用 pip +# pip install "lightrag-hku[api]" ``` * 从源代码安装 ```bash -# Clone the repository +# 克隆仓库 git clone https://github.com/HKUDS/lightrag.git -# Change to the repository directory +# 进入仓库目录 cd lightrag -# Create a Python virtual environment -uv venv --seed --python 3.12 -source .venv/bin/activate +# 使用 uv (推荐) +# 注意: uv sync 会自动在 .venv/ 目录创建虚拟环境 +uv sync --extra api +source .venv/bin/activate # 激活虚拟环境 (Linux/macOS) +# Windows 系统: .venv\Scripts\activate -# Install in editable mode with API support -pip install -e ".[api]" +# 或使用 pip 与虚拟环境 +# python -m venv .venv +# source .venv/bin/activate # Windows: .venv\Scripts\activate +# pip install -e ".[api]" -# Build front-end artifacts +# 构建前端代码 cd lightrag_webui bun install --frozen-lockfile bun run build diff --git a/lightrag/api/README.md b/lightrag/api/README.md index 690d9ac9..9e484f1b 100644 --- a/lightrag/api/README.md +++ b/lightrag/api/README.md @@ -15,7 +15,11 @@ The LightRAG Server is designed to provide a Web UI and API support. The Web UI * Install from PyPI ```bash -pip install "lightrag-hku[api]" +# Using uv (recommended) +uv pip install "lightrag-hku[api]" + +# Or using pip +# pip install "lightrag-hku[api]" ``` * Installation from Source @@ -27,12 +31,16 @@ git clone https://github.com/HKUDS/lightrag.git # Change to the repository directory cd lightrag -# Create a Python virtual environment -uv venv --seed --python 3.12 -source .venv/bin/activate +# Using uv (recommended) +# Note: uv sync automatically creates a virtual environment in .venv/ +uv sync --extra api +source .venv/bin/activate # Activate the virtual environment (Linux/macOS) +# Or on Windows: .venv\Scripts\activate -# Install in editable mode with API support -pip install -e ".[api]" +# Or using pip with virtual environment +# python -m venv .venv +# source .venv/bin/activate # Windows: .venv\Scripts\activate +# pip install -e ".[api]" # Build front-end artifacts cd lightrag_webui From c12bc372dca2d077c7e4e81753aaf5dae04f1cfa Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 04:35:41 +0800 Subject: [PATCH 32/62] Update README --- README-zh.md | 3 ++- README.md | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/README-zh.md b/README-zh.md index f4020e1f..8dcbc0e5 100644 --- a/README-zh.md +++ b/README-zh.md @@ -107,7 +107,8 @@ uv pip install "lightrag-hku[api]" # 或使用 pip # pip install "lightrag-hku[api]" -cp env.example .env +cp env.example .env # 使用你的LLM和Embedding模型访问参数更新.env文件 + lightrag-server ``` diff --git a/README.md b/README.md index 64921dbc..376d1154 100644 --- a/README.md +++ b/README.md @@ -107,7 +107,8 @@ uv pip install "lightrag-hku[api]" # Or using pip # pip install "lightrag-hku[api]" -cp env.example .env +cp env.example .env # Update the .env with your LLM and embedding configurations + lightrag-server ``` From 88ab73f6ae2fac3edb5e6add25bb8783df1f862c Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 11:52:26 +0800 Subject: [PATCH 33/62] HotFix: Restore streaming response in OpenAI LLM The stream and timeout parameters were moved from **kwargs to explicit parameters in a previous commit, but were not being passed to the OpenAI API, causing streaming responses to fail and fall back to non-streaming mode.Fixes the issue where stream=True was being silently ignored, resulting in unexpected non-streaming behavior. --- lightrag/llm/openai.py | 11 ++++++++--- 1 file changed, 8 insertions(+), 3 deletions(-) diff --git a/lightrag/llm/openai.py b/lightrag/llm/openai.py index 3339ea3a..dd84db71 100644 --- a/lightrag/llm/openai.py +++ b/lightrag/llm/openai.py @@ -138,7 +138,6 @@ async def openai_complete_if_cache( base_url: str | None = None, api_key: str | None = None, token_tracker: Any | None = None, - keyword_extraction: bool = False, # Will be removed from kwargs before passing to OpenAI stream: bool | None = None, timeout: int | None = None, **kwargs: Any, @@ -170,14 +169,14 @@ async def openai_complete_if_cache( api_key: Optional OpenAI API key. If None, uses the OPENAI_API_KEY environment variable. token_tracker: Optional token usage tracker for monitoring API usage. enable_cot: Whether to enable Chain of Thought (COT) processing. Default is False. + stream: Whether to stream the response. Default is False. + timeout: Request timeout in seconds. Default is None. **kwargs: Additional keyword arguments to pass to the OpenAI API. Special kwargs: - openai_client_configs: Dict of configuration options for the AsyncOpenAI client. These will be passed to the client constructor but will be overridden by explicit parameters (api_key, base_url). - keyword_extraction: Will be removed from kwargs before passing to OpenAI. - - stream: Whether to stream the response. Default is False. - - timeout: Request timeout in seconds. Default is None. Returns: The completed text (with integrated COT content if available) or an async iterator @@ -228,6 +227,12 @@ async def openai_complete_if_cache( messages = kwargs.pop("messages", messages) + # Add explicit parameters back to kwargs so they're passed to OpenAI API + if stream is not None: + kwargs["stream"] = stream + if timeout is not None: + kwargs["timeout"] = timeout + try: # Don't use async with context manager, use client directly if "response_format" in kwargs: From 2f16065256cc2c2d84061aab159f90bea9698215 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 12:02:17 +0800 Subject: [PATCH 34/62] Refactor keyword_extraction from kwargs to explicit parameter MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Add keyword_extraction param to functions • Remove kwargs.pop() calls • Update function signatures • Improve parameter documentation • Make parameter handling consistent --- lightrag/llm/openai.py | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/lightrag/llm/openai.py b/lightrag/llm/openai.py index dd84db71..a2bbfa23 100644 --- a/lightrag/llm/openai.py +++ b/lightrag/llm/openai.py @@ -140,6 +140,7 @@ async def openai_complete_if_cache( token_tracker: Any | None = None, stream: bool | None = None, timeout: int | None = None, + keyword_extraction: bool = False, **kwargs: Any, ) -> str: """Complete a prompt using OpenAI's API with caching support and Chain of Thought (COT) integration. @@ -171,12 +172,13 @@ async def openai_complete_if_cache( enable_cot: Whether to enable Chain of Thought (COT) processing. Default is False. stream: Whether to stream the response. Default is False. timeout: Request timeout in seconds. Default is None. + keyword_extraction: Whether to enable keyword extraction mode. When True, triggers + special response formatting for keyword extraction. Default is False. **kwargs: Additional keyword arguments to pass to the OpenAI API. Special kwargs: - openai_client_configs: Dict of configuration options for the AsyncOpenAI client. These will be passed to the client constructor but will be overridden by explicit parameters (api_key, base_url). - - keyword_extraction: Will be removed from kwargs before passing to OpenAI. Returns: The completed text (with integrated COT content if available) or an async iterator @@ -197,7 +199,6 @@ async def openai_complete_if_cache( # Remove special kwargs that shouldn't be passed to OpenAI kwargs.pop("hashing_kv", None) - kwargs.pop("keyword_extraction", None) # Extract client configuration options client_configs = kwargs.pop("openai_client_configs", {}) @@ -521,7 +522,6 @@ async def openai_complete( ) -> Union[str, AsyncIterator[str]]: if history_messages is None: history_messages = [] - keyword_extraction = kwargs.pop("keyword_extraction", None) if keyword_extraction: kwargs["response_format"] = "json" model_name = kwargs["hashing_kv"].global_config["llm_model_name"] @@ -530,6 +530,7 @@ async def openai_complete( prompt, system_prompt=system_prompt, history_messages=history_messages, + keyword_extraction=keyword_extraction, **kwargs, ) @@ -544,7 +545,6 @@ async def gpt_4o_complete( ) -> str: if history_messages is None: history_messages = [] - keyword_extraction = kwargs.pop("keyword_extraction", None) if keyword_extraction: kwargs["response_format"] = GPTKeywordExtractionFormat return await openai_complete_if_cache( @@ -553,6 +553,7 @@ async def gpt_4o_complete( system_prompt=system_prompt, history_messages=history_messages, enable_cot=enable_cot, + keyword_extraction=keyword_extraction, **kwargs, ) @@ -567,7 +568,6 @@ async def gpt_4o_mini_complete( ) -> str: if history_messages is None: history_messages = [] - keyword_extraction = kwargs.pop("keyword_extraction", None) if keyword_extraction: kwargs["response_format"] = GPTKeywordExtractionFormat return await openai_complete_if_cache( @@ -576,6 +576,7 @@ async def gpt_4o_mini_complete( system_prompt=system_prompt, history_messages=history_messages, enable_cot=enable_cot, + keyword_extraction=keyword_extraction, **kwargs, ) @@ -590,13 +591,13 @@ async def nvidia_openai_complete( ) -> str: if history_messages is None: history_messages = [] - kwargs.pop("keyword_extraction", None) result = await openai_complete_if_cache( "nvidia/llama-3.1-nemotron-70b-instruct", # context length 128k prompt, system_prompt=system_prompt, history_messages=history_messages, enable_cot=enable_cot, + keyword_extraction=keyword_extraction, base_url="https://integrate.api.nvidia.com/v1", **kwargs, ) From 1485cb82e90f03d817bf97e3e3418d7112f33639 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 13:37:33 +0800 Subject: [PATCH 35/62] Add LLM query cache cleanup tool for KV storage backends - Interactive cleanup workflow - Supports all KV storage types - Batch deletion with progress - Comprehensive error reporting - Preserves workspace isolation --- .../tools/README_CLEAN_LLM_QUERY_CACHE.md | 661 ++++++++++ lightrag/tools/clean_llm_query_cache.py | 1094 +++++++++++++++++ 2 files changed, 1755 insertions(+) create mode 100644 lightrag/tools/README_CLEAN_LLM_QUERY_CACHE.md create mode 100644 lightrag/tools/clean_llm_query_cache.py diff --git a/lightrag/tools/README_CLEAN_LLM_QUERY_CACHE.md b/lightrag/tools/README_CLEAN_LLM_QUERY_CACHE.md new file mode 100644 index 00000000..42514579 --- /dev/null +++ b/lightrag/tools/README_CLEAN_LLM_QUERY_CACHE.md @@ -0,0 +1,661 @@ +# LLM Query Cache Cleanup Tool - User Guide + +## Overview + +This tool cleans up LightRAG's LLM query cache from KV storage implementations. It specifically targets query caches generated during RAG query operations (modes: `mix`, `hybrid`, `local`, `global`), including both query and keywords caches. + +## Supported Storage Types + +1. **JsonKVStorage** - File-based JSON storage +2. **RedisKVStorage** - Redis database storage +3. **PGKVStorage** - PostgreSQL database storage +4. **MongoKVStorage** - MongoDB database storage + +## Cache Types + +The tool cleans up the following query cache types: + +### Query Cache Modes (4 types) +- `mix:*` - Mixed mode query caches +- `hybrid:*` - Hybrid mode query caches +- `local:*` - Local mode query caches +- `global:*` - Global mode query caches + +### Cache Content Types (2 types) +- `*:query:*` - Query result caches +- `*:keywords:*` - Keywords extraction caches + +### Cache Key Format +``` +:: +``` + +Examples: +- `mix:query:5ce04d25e957c290216cee5bfe6344fa` +- `mix:keywords:fee77b98244a0b047ce95e21060de60e` +- `global:query:abc123def456...` +- `local:keywords:789xyz...` + +**Important Note**: This tool does NOT clean extraction caches (`default:extract:*` and `default:summary:*`). Use the migration tool or manual deletion for those caches. + +## Prerequisites + +- The tool reads storage configuration from environment variables or `config.ini` +- Ensure the target storage is properly configured and accessible +- Backup important data before running cleanup operations + +## Usage + +### Basic Usage + +Run from the LightRAG project root directory: + +```bash +python -m lightrag.tools.clean_llm_query_cache +# or +python lightrag/tools/clean_llm_query_cache.py +``` + +### Interactive Workflow + +The tool guides you through the following steps: + +#### 1. Select Storage Type +``` +============================================================ +LLM Query Cache Cleanup Tool - LightRAG +============================================================ + +=== Storage Setup === + +Supported KV Storage Types: +[1] JsonKVStorage +[2] RedisKVStorage +[3] PGKVStorage +[4] MongoKVStorage + +Select storage type (1-4) (Press Enter to exit): 1 +``` + +**Note**: You can press Enter or type `0` at any prompt to exit gracefully. + +#### 2. Storage Validation +The tool will: +- Check required environment variables +- Auto-detect workspace configuration +- Initialize and connect to storage +- Verify connection status + +``` +Checking configuration... +✓ All required environment variables are set + +Initializing storage... +- Storage Type: JsonKVStorage +- Workspace: space1 +- Connection Status: ✓ Success +``` + +#### 3. View Cache Statistics + +The tool displays a detailed breakdown of query caches by mode and type: + +``` +Counting query cache records... + +📊 Query Cache Statistics (Before Cleanup): +┌────────────┬────────────┬────────────┬────────────┐ +│ Mode │ Query │ Keywords │ Total │ +├────────────┼────────────┼────────────┼────────────┤ +│ mix │ 1,234 │ 567 │ 1,801 │ +│ hybrid │ 890 │ 423 │ 1,313 │ +│ local │ 2,345 │ 1,123 │ 3,468 │ +│ global │ 678 │ 345 │ 1,023 │ +├────────────┼────────────┼────────────┼────────────┤ +│ Total │ 5,147 │ 2,458 │ 7,605 │ +└────────────┴────────────┴────────────┴────────────┘ +``` + +#### 4. Select Cleanup Scope + +Choose what type of caches to delete: + +``` +=== Cleanup Options === +[1] Delete all query caches (both query and keywords) +[2] Delete query caches only (keep keywords) +[3] Delete keywords caches only (keep query) +[0] Cancel + +Select cleanup option (0-3): 1 +``` + +**Cleanup Types:** +- **Option 1 (all)**: Deletes both query and keywords caches across all modes +- **Option 2 (query)**: Deletes only query caches, preserves keywords caches +- **Option 3 (keywords)**: Deletes only keywords caches, preserves query caches + +#### 5. Confirm Deletion + +Review the cleanup plan and confirm: + +``` +============================================================ +Cleanup Confirmation +============================================================ +Storage: JsonKVStorage (workspace: space1) +Cleanup Type: all +Records to Delete: 7,605 / 7,605 + +⚠️ WARNING: This will delete ALL query caches across all modes! + +Continue with deletion? (y/n): y +``` + +#### 6. Execute Cleanup + +The tool performs batch deletion with real-time progress: + +**JsonKVStorage Example:** +``` +=== Starting Cleanup === +💡 Processing 1,000 records at a time from JsonKVStorage + +Batch 1/8: ████░░░░░░░░░░░░░░░░ 1,000/7,605 (13.1%) ✓ +Batch 2/8: ████████░░░░░░░░░░░░ 2,000/7,605 (26.3%) ✓ +... +Batch 8/8: ████████████████████ 7,605/7,605 (100.0%) ✓ + +Persisting changes to storage... +✓ Changes persisted successfully +``` + +**RedisKVStorage Example:** +``` +=== Starting Cleanup === +💡 Processing Redis keys in batches of 1,000 + +Batch 1: Deleted 1,000 keys (Total: 1,000) ✓ +Batch 2: Deleted 1,000 keys (Total: 2,000) ✓ +... +``` + +**PostgreSQL Example:** +``` +=== Starting Cleanup === +💡 Executing PostgreSQL DELETE query + +✓ Deleted 7,605 records in 0.45s +``` + +**MongoDB Example:** +``` +=== Starting Cleanup === +💡 Executing MongoDB deleteMany operations + +Pattern 1/8: Deleted 1,234 records ✓ +Pattern 2/8: Deleted 567 records ✓ +... +Total deleted: 7,605 records +``` + +#### 7. Review Cleanup Report + +The tool provides a comprehensive final report: + +**Successful Cleanup:** +``` +============================================================ +Cleanup Complete - Final Report +============================================================ + +📊 Statistics: + Total records to delete: 7,605 + Total batches: 8 + Successful batches: 8 + Failed batches: 0 + Successfully deleted: 7,605 + Failed to delete: 0 + Success rate: 100.00% + +📈 Before/After Comparison: + Total caches before: 7,605 + Total caches after: 0 + Net reduction: 7,605 + +============================================================ +✓ SUCCESS: All records cleaned up successfully! +============================================================ + +📊 Query Cache Statistics (After Cleanup): +┌────────────┬────────────┬────────────┬────────────┐ +│ Mode │ Query │ Keywords │ Total │ +├────────────┼────────────┼────────────┼────────────┤ +│ mix │ 0 │ 0 │ 0 │ +│ hybrid │ 0 │ 0 │ 0 │ +│ local │ 0 │ 0 │ 0 │ +│ global │ 0 │ 0 │ 0 │ +├────────────┼────────────┼────────────┼────────────┤ +│ Total │ 0 │ 0 │ 0 │ +└────────────┴────────────┴────────────┴────────────┘ +``` + +**Cleanup with Errors:** +``` +============================================================ +Cleanup Complete - Final Report +============================================================ + +📊 Statistics: + Total records to delete: 7,605 + Total batches: 8 + Successful batches: 7 + Failed batches: 1 + Successfully deleted: 6,605 + Failed to delete: 1,000 + Success rate: 86.85% + +📈 Before/After Comparison: + Total caches before: 7,605 + Total caches after: 1,000 + Net reduction: 6,605 + +⚠️ Errors encountered: 1 + +Error Details: +------------------------------------------------------------ + +Error Summary: + - ConnectionError: 1 occurrence(s) + +First 5 errors: + + 1. Batch 3 + Type: ConnectionError + Message: Connection timeout after 30s + Records lost: 1,000 + +============================================================ +⚠️ WARNING: Cleanup completed with errors! + Please review the error details above. +============================================================ +``` + +## Technical Details + +### Workspace Handling + +The tool retrieves workspace in the following priority order: + +1. **Storage-specific workspace environment variables** + - PGKVStorage: `POSTGRES_WORKSPACE` + - MongoKVStorage: `MONGODB_WORKSPACE` + - RedisKVStorage: `REDIS_WORKSPACE` + +2. **Generic workspace environment variable** + - `WORKSPACE` + +3. **Default value** + - Empty string (uses storage's default workspace) + +### Batch Deletion + +- Default batch size: 1000 records/batch +- Prevents memory overflow and connection timeouts +- Each batch is processed independently +- Failed batches are logged but don't stop cleanup + +### Storage-Specific Deletion Strategies + +#### JsonKVStorage +- Collects all matching keys first (snapshot approach) +- Deletes in batches with lock protection +- Fast in-memory operations + +#### RedisKVStorage +- Uses SCAN with pattern matching +- Pipeline DELETE for batch operations +- Cursor-based iteration for large datasets + +#### PostgreSQL +- Single DELETE query with OR conditions +- Efficient server-side bulk deletion +- Uses LIKE patterns for mode/type matching + +#### MongoDB +- Multiple deleteMany operations (one per pattern) +- Regex-based document matching +- Returns exact deletion counts + +### Pattern Matching Implementation + +**JsonKVStorage:** +```python +# Direct key prefix matching +if key.startswith("mix:query:") or key.startswith("mix:keywords:") +``` + +**RedisKVStorage:** +```python +# SCAN with namespace-prefixed patterns +pattern = f"{namespace}:mix:query:*" +cursor, keys = await redis.scan(cursor, match=pattern) +``` + +**PostgreSQL:** +```python +# SQL LIKE conditions +WHERE id LIKE 'mix:query:%' OR id LIKE 'mix:keywords:%' +``` + +**MongoDB:** +```python +# Regex queries on _id field +{"_id": {"$regex": "^mix:query:"}} +``` + +## Error Handling & Resilience + +The tool implements comprehensive error tracking: + +### Batch-Level Error Tracking +- Each batch is independently error-checked +- Failed batches are logged with full details +- Successful batches commit even if later batches fail +- Real-time progress shows ✓ (success) or ✗ (failed) + +### Error Reporting +After cleanup completes, a detailed report includes: +- **Statistics**: Total records, success/failure counts, success rate +- **Before/After Comparison**: Net reduction in cache count +- **Error Summary**: Grouped by error type with occurrence counts +- **Error Details**: Batch number, error type, message, and records lost +- **Recommendations**: Clear indication of success or need for review + +### Verification +- Post-cleanup count verification +- Before/after statistics comparison +- Identifies partial cleanup scenarios + +## Important Notes + +1. **Irreversible Operation** + - Deleted caches cannot be recovered + - Always backup important data before cleanup + - Test on non-production data first + +2. **Performance Impact** + - Query performance may degrade temporarily after cleanup + - Caches will rebuild on subsequent queries + - Consider cleanup during off-peak hours + +3. **Selective Cleanup** + - Choose cleanup scope carefully + - Keywords caches may be valuable for future queries + - Query caches rebuild faster than keywords caches + +4. **Workspace Isolation** + - Cleanup only affects the selected workspace + - Other workspaces remain untouched + - Verify workspace before confirming cleanup + +5. **Interrupt and Resume** + - Cleanup can be interrupted at any time (Ctrl+C) + - Already deleted records cannot be recovered + - No automatic resume - must run tool again + +## Storage Configuration + +The tool supports multiple configuration methods with the following priority: + +1. **Environment variables** (highest priority) +2. **config.ini file** (medium priority) +3. **Default values** (lowest priority) + +### Environment Variable Configuration + +Configure storage settings in your `.env` file: + +#### Workspace Configuration (Optional) + +```bash +# Generic workspace (shared by all storages) +WORKSPACE=space1 + +# Or configure independent workspace for specific storage +POSTGRES_WORKSPACE=pg_space +MONGODB_WORKSPACE=mongo_space +REDIS_WORKSPACE=redis_space +``` + +**Workspace Priority**: Storage-specific > Generic WORKSPACE > Empty string + +#### JsonKVStorage + +```bash +WORKING_DIR=./rag_storage +``` + +#### RedisKVStorage + +```bash +REDIS_URI=redis://localhost:6379 +``` + +#### PGKVStorage + +```bash +POSTGRES_HOST=localhost +POSTGRES_PORT=5432 +POSTGRES_USER=your_username +POSTGRES_PASSWORD=your_password +POSTGRES_DATABASE=your_database +``` + +#### MongoKVStorage + +```bash +MONGO_URI=mongodb://root:root@localhost:27017/ +MONGO_DATABASE=LightRAG +``` + +### config.ini Configuration + +Alternatively, create a `config.ini` file in the project root: + +```ini +[redis] +uri = redis://localhost:6379 + +[postgres] +host = localhost +port = 5432 +user = postgres +password = yourpassword +database = lightrag + +[mongodb] +uri = mongodb://root:root@localhost:27017/ +database = LightRAG +``` + +**Note**: Environment variables take precedence over config.ini settings. + +## Troubleshooting + +### Missing Environment Variables +``` +⚠️ Warning: Missing environment variables: POSTGRES_USER, POSTGRES_PASSWORD +``` +**Solution**: Add missing variables to your `.env` file or configure in `config.ini` + +### Connection Failed +``` +✗ Initialization failed: Connection refused +``` +**Solutions**: +- Check if database service is running +- Verify connection parameters (host, port, credentials) +- Check firewall settings +- Ensure network connectivity for remote databases + +### No Caches Found +``` +⚠️ No query caches found in storage +``` +**Possible Reasons**: +- No queries have been run yet +- Caches were already cleaned +- Wrong workspace selected +- Different storage type was used for queries + +### Partial Cleanup +``` +⚠️ WARNING: Cleanup completed with errors! +``` +**Solutions**: +- Check error details in the report +- Verify storage connection stability +- Re-run tool to clean remaining caches +- Check storage capacity and permissions + +## Use Cases + +### Use Case 1: Clean All Query Caches + +**Scenario**: Free up storage space by removing all query caches + +```bash +# Run tool +python -m lightrag.tools.clean_llm_query_cache + +# Select: Storage type -> Option 1 (all) -> Confirm (y) +``` + +**Result**: All query and keywords caches deleted, maximum storage freed + +### Use Case 2: Refresh Query Caches Only + +**Scenario**: Force query cache rebuild while keeping keywords + +```bash +# Run tool +python -m lightrag.tools.clean_llm_query_cache + +# Select: Storage type -> Option 2 (query only) -> Confirm (y) +``` + +**Result**: Query caches deleted, keywords preserved for faster rebuild + +### Use Case 3: Clean Stale Keywords + +**Scenario**: Remove outdated keywords while keeping recent query results + +```bash +# Run tool +python -m lightrag.tools.clean_llm_query_cache + +# Select: Storage type -> Option 3 (keywords only) -> Confirm (y) +``` + +**Result**: Keywords deleted, query caches preserved + +### Use Case 4: Workspace-Specific Cleanup + +**Scenario**: Clean caches for a specific workspace + +```bash +# Configure workspace +export WORKSPACE=development + +# Run tool +python -m lightrag.tools.clean_llm_query_cache + +# Select: Storage type -> Cleanup option -> Confirm (y) +``` + +**Result**: Only development workspace caches cleaned + +## Best Practices + +1. **Backup Before Cleanup** + - Always backup your storage before major cleanup + - Test cleanup on non-production data first + - Document cleanup decisions + +2. **Monitor Performance** + - Watch storage metrics during cleanup + - Monitor query performance after cleanup + - Allow time for cache rebuild + +3. **Scheduled Cleanup** + - Clean caches periodically (weekly/monthly) + - Automate cleanup for development environments + - Keep production cleanup manual for safety + +4. **Selective Deletion** + - Consider cleanup scope based on needs + - Keywords caches are harder to rebuild + - Query caches rebuild automatically + +5. **Storage Capacity** + - Monitor storage usage trends + - Clean caches before reaching capacity limits + - Archive old data if needed + +## Comparison with Migration Tool + +| Feature | Cleanup Tool | Migration Tool | +|---------|-------------|----------------| +| **Purpose** | Delete query caches | Migrate extraction caches | +| **Cache Types** | mix/hybrid/local/global | default:extract/summary | +| **Modes** | query, keywords | extract, summary | +| **Operation** | Deletion | Copy between storages | +| **Reversible** | No | Yes (source unchanged) | +| **Use Case** | Free storage, refresh caches | Change storage backend | + +## Limitations + +1. **Single Storage Operation** + - Can only clean one storage type at a time + - To clean multiple storages, run tool multiple times + +2. **No Dry Run Mode** + - Deletion is immediate after confirmation + - No preview-only mode available + - Test on non-production first + +3. **No Selective Mode Cleanup** + - Cannot clean only specific modes (e.g., only `mix`) + - Cleanup applies to all modes for selected cache type + - All-or-nothing per cache type + +4. **No Scheduled Cleanup** + - Manual execution required + - No built-in scheduling + - Use cron/scheduler if automation needed + +5. **Verification Limitations** + - Post-cleanup verification may fail in error scenarios + - Manual verification recommended for critical operations + +## Future Enhancements + +Potential improvements for future versions: + +- Selective mode cleanup (e.g., clean only `mix` mode) +- Age-based cleanup (delete caches older than X days) +- Size-based cleanup (delete largest caches first) +- Dry run mode for safe preview +- Automated scheduling support +- Cache statistics export +- Incremental cleanup with pause/resume + +## Support + +For issues, questions, or feature requests: +- Check the error details in the cleanup report +- Review storage configuration +- Verify workspace settings +- Test with a small dataset first +- Report bugs through project issue tracker diff --git a/lightrag/tools/clean_llm_query_cache.py b/lightrag/tools/clean_llm_query_cache.py new file mode 100644 index 00000000..caa1ad06 --- /dev/null +++ b/lightrag/tools/clean_llm_query_cache.py @@ -0,0 +1,1094 @@ +#!/usr/bin/env python3 +""" +LLM Query Cache Cleanup Tool for LightRAG + +This tool cleans up LLM query cache (mix:*, hybrid:*, local:*, global:*) +from KV storage implementations while preserving workspace isolation. + +Usage: + python -m lightrag.tools.clean_llm_query_cache + # or + python lightrag/tools/clean_llm_query_cache.py + +Supported KV Storage Types: + - JsonKVStorage + - RedisKVStorage + - PGKVStorage + - MongoKVStorage +""" + +import asyncio +import os +import sys +import time +from typing import Any, Dict, List +from dataclasses import dataclass, field +from dotenv import load_dotenv + +# Add project root to path for imports +sys.path.insert( + 0, os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) +) + +from lightrag.kg import STORAGE_ENV_REQUIREMENTS +from lightrag.kg.shared_storage import set_all_update_flags +from lightrag.namespace import NameSpace +from lightrag.utils import setup_logger + +# Load environment variables +load_dotenv(dotenv_path=".env", override=False) + +# Setup logger +setup_logger("lightrag", level="INFO") + +# Storage type configurations +STORAGE_TYPES = { + "1": "JsonKVStorage", + "2": "RedisKVStorage", + "3": "PGKVStorage", + "4": "MongoKVStorage", +} + +# Workspace environment variable mapping +WORKSPACE_ENV_MAP = { + "PGKVStorage": "POSTGRES_WORKSPACE", + "MongoKVStorage": "MONGODB_WORKSPACE", + "RedisKVStorage": "REDIS_WORKSPACE", +} + +# Query cache modes +QUERY_MODES = ["mix", "hybrid", "local", "global"] + +# Query cache types +CACHE_TYPES = ["query", "keywords"] + +# Default batch size for deletion +DEFAULT_BATCH_SIZE = 1000 + +# ANSI color codes for terminal output +BOLD_CYAN = "\033[1;36m" +BOLD_RED = "\033[1;31m" +BOLD_GREEN = "\033[1;32m" +RESET = "\033[0m" + + +@dataclass +class CleanupStats: + """Cleanup statistics and error tracking""" + + # Count by mode and cache_type before cleanup + counts_before: Dict[str, Dict[str, int]] = field(default_factory=dict) + + # Deletion statistics + total_to_delete: int = 0 + total_batches: int = 0 + successful_batches: int = 0 + failed_batches: int = 0 + successfully_deleted: int = 0 + failed_to_delete: int = 0 + + # Count by mode and cache_type after cleanup + counts_after: Dict[str, Dict[str, int]] = field(default_factory=dict) + + # Error tracking + errors: List[Dict[str, Any]] = field(default_factory=list) + + def add_error(self, batch_idx: int, error: Exception, batch_size: int): + """Record batch error""" + self.errors.append( + { + "batch": batch_idx, + "error_type": type(error).__name__, + "error_msg": str(error), + "records_lost": batch_size, + "timestamp": time.time(), + } + ) + self.failed_batches += 1 + self.failed_to_delete += batch_size + + def initialize_counts(self): + """Initialize count dictionaries""" + for mode in QUERY_MODES: + self.counts_before[mode] = {"query": 0, "keywords": 0} + self.counts_after[mode] = {"query": 0, "keywords": 0} + + +class CleanupTool: + """LLM Query Cache Cleanup Tool""" + + def __init__(self): + self.storage = None + self.workspace = "" + self.batch_size = DEFAULT_BATCH_SIZE + + def get_workspace_for_storage(self, storage_name: str) -> str: + """Get workspace for a specific storage type + + Priority: Storage-specific env var > WORKSPACE env var > empty string + + Args: + storage_name: Storage implementation name + + Returns: + Workspace name + """ + # Check storage-specific workspace + if storage_name in WORKSPACE_ENV_MAP: + specific_workspace = os.getenv(WORKSPACE_ENV_MAP[storage_name]) + if specific_workspace: + return specific_workspace + + # Check generic WORKSPACE + workspace = os.getenv("WORKSPACE", "") + return workspace + + def check_config_ini_for_storage(self, storage_name: str) -> bool: + """Check if config.ini has configuration for the storage type + + Args: + storage_name: Storage implementation name + + Returns: + True if config.ini has the necessary configuration + """ + try: + import configparser + + config = configparser.ConfigParser() + config.read("config.ini", "utf-8") + + if storage_name == "RedisKVStorage": + return config.has_option("redis", "uri") + elif storage_name == "PGKVStorage": + return ( + config.has_option("postgres", "user") + and config.has_option("postgres", "password") + and config.has_option("postgres", "database") + ) + elif storage_name == "MongoKVStorage": + return config.has_option("mongodb", "uri") and config.has_option( + "mongodb", "database" + ) + + return False + except Exception: + return False + + def check_env_vars(self, storage_name: str) -> bool: + """Check environment variables, show warnings if missing but don't fail + + Args: + storage_name: Storage implementation name + + Returns: + Always returns True (warnings only, no hard failure) + """ + required_vars = STORAGE_ENV_REQUIREMENTS.get(storage_name, []) + + if not required_vars: + print("✓ No environment variables required") + return True + + missing_vars = [var for var in required_vars if var not in os.environ] + + if missing_vars: + print( + f"⚠️ Warning: Missing environment variables: {', '.join(missing_vars)}" + ) + + # Check if config.ini has configuration + has_config = self.check_config_ini_for_storage(storage_name) + if has_config: + print(" ✓ Found configuration in config.ini") + else: + print(f" Will attempt to use defaults for {storage_name}") + + return True + + print("✓ All required environment variables are set") + return True + + def get_storage_class(self, storage_name: str): + """Dynamically import and return storage class + + Args: + storage_name: Storage implementation name + + Returns: + Storage class + """ + if storage_name == "JsonKVStorage": + from lightrag.kg.json_kv_impl import JsonKVStorage + + return JsonKVStorage + elif storage_name == "RedisKVStorage": + from lightrag.kg.redis_impl import RedisKVStorage + + return RedisKVStorage + elif storage_name == "PGKVStorage": + from lightrag.kg.postgres_impl import PGKVStorage + + return PGKVStorage + elif storage_name == "MongoKVStorage": + from lightrag.kg.mongo_impl import MongoKVStorage + + return MongoKVStorage + else: + raise ValueError(f"Unsupported storage type: {storage_name}") + + async def initialize_storage(self, storage_name: str, workspace: str): + """Initialize storage instance with fallback to config.ini and defaults + + Args: + storage_name: Storage implementation name + workspace: Workspace name + + Returns: + Initialized storage instance + + Raises: + Exception: If initialization fails + """ + storage_class = self.get_storage_class(storage_name) + + # Create global config + global_config = { + "working_dir": os.getenv("WORKING_DIR", "./rag_storage"), + "embedding_batch_num": 10, + } + + # Initialize storage + storage = storage_class( + namespace=NameSpace.KV_STORE_LLM_RESPONSE_CACHE, + workspace=workspace, + global_config=global_config, + embedding_func=None, + ) + + # Initialize the storage (may raise exception if connection fails) + await storage.initialize() + + return storage + + async def count_query_caches_json(self, storage) -> Dict[str, Dict[str, int]]: + """Count query caches in JsonKVStorage by mode and cache_type + + Args: + storage: JsonKVStorage instance + + Returns: + Dictionary with counts for each mode and cache_type + """ + counts = {mode: {"query": 0, "keywords": 0} for mode in QUERY_MODES} + + async with storage._storage_lock: + for key in storage._data.keys(): + for mode in QUERY_MODES: + if key.startswith(f"{mode}:query:"): + counts[mode]["query"] += 1 + elif key.startswith(f"{mode}:keywords:"): + counts[mode]["keywords"] += 1 + + return counts + + async def count_query_caches_redis(self, storage) -> Dict[str, Dict[str, int]]: + """Count query caches in RedisKVStorage by mode and cache_type + + Args: + storage: RedisKVStorage instance + + Returns: + Dictionary with counts for each mode and cache_type + """ + counts = {mode: {"query": 0, "keywords": 0} for mode in QUERY_MODES} + + print("Scanning Redis keys...", end="", flush=True) + + async with storage._get_redis_connection() as redis: + for mode in QUERY_MODES: + for cache_type in CACHE_TYPES: + pattern = f"{mode}:{cache_type}:*" + prefixed_pattern = f"{storage.final_namespace}:{pattern}" + cursor = 0 + + while True: + cursor, keys = await redis.scan( + cursor, match=prefixed_pattern, count=DEFAULT_BATCH_SIZE + ) + counts[mode][cache_type] += len(keys) + + if cursor == 0: + break + + print() # New line after progress + return counts + + async def count_query_caches_pg(self, storage) -> Dict[str, Dict[str, int]]: + """Count query caches in PostgreSQL by mode and cache_type + + Args: + storage: PGKVStorage instance + + Returns: + Dictionary with counts for each mode and cache_type + """ + from lightrag.kg.postgres_impl import namespace_to_table_name + + counts = {mode: {"query": 0, "keywords": 0} for mode in QUERY_MODES} + table_name = namespace_to_table_name(storage.namespace) + + print("Counting PostgreSQL records...", end="", flush=True) + start_time = time.time() + + for mode in QUERY_MODES: + for cache_type in CACHE_TYPES: + query = f""" + SELECT COUNT(*) as count + FROM {table_name} + WHERE workspace = $1 + AND id LIKE $2 + """ + pattern = f"{mode}:{cache_type}:%" + result = await storage.db.query(query, [storage.workspace, pattern]) + counts[mode][cache_type] = result["count"] if result else 0 + + elapsed = time.time() - start_time + if elapsed > 1: + print(f" (took {elapsed:.1f}s)", end="") + print() # New line + + return counts + + async def count_query_caches_mongo(self, storage) -> Dict[str, Dict[str, int]]: + """Count query caches in MongoDB by mode and cache_type + + Args: + storage: MongoKVStorage instance + + Returns: + Dictionary with counts for each mode and cache_type + """ + counts = {mode: {"query": 0, "keywords": 0} for mode in QUERY_MODES} + + print("Counting MongoDB documents...", end="", flush=True) + start_time = time.time() + + for mode in QUERY_MODES: + for cache_type in CACHE_TYPES: + pattern = f"^{mode}:{cache_type}:" + query = {"_id": {"$regex": pattern}} + count = await storage._data.count_documents(query) + counts[mode][cache_type] = count + + elapsed = time.time() - start_time + if elapsed > 1: + print(f" (took {elapsed:.1f}s)", end="") + print() # New line + + return counts + + async def count_query_caches( + self, storage, storage_name: str + ) -> Dict[str, Dict[str, int]]: + """Count query caches from any storage type efficiently + + Args: + storage: Storage instance + storage_name: Storage type name + + Returns: + Dictionary with counts for each mode and cache_type + """ + if storage_name == "JsonKVStorage": + return await self.count_query_caches_json(storage) + elif storage_name == "RedisKVStorage": + return await self.count_query_caches_redis(storage) + elif storage_name == "PGKVStorage": + return await self.count_query_caches_pg(storage) + elif storage_name == "MongoKVStorage": + return await self.count_query_caches_mongo(storage) + else: + raise ValueError(f"Unsupported storage type: {storage_name}") + + async def delete_query_caches_json( + self, storage, cleanup_type: str, stats: CleanupStats + ): + """Delete query caches from JsonKVStorage + + Args: + storage: JsonKVStorage instance + cleanup_type: 'all', 'query', or 'keywords' + stats: CleanupStats object to track progress + """ + # Collect keys to delete + async with storage._storage_lock: + keys_to_delete = [] + for key in storage._data.keys(): + should_delete = False + for mode in QUERY_MODES: + if cleanup_type == "all": + if key.startswith(f"{mode}:query:") or key.startswith( + f"{mode}:keywords:" + ): + should_delete = True + elif cleanup_type == "query": + if key.startswith(f"{mode}:query:"): + should_delete = True + elif cleanup_type == "keywords": + if key.startswith(f"{mode}:keywords:"): + should_delete = True + + if should_delete: + keys_to_delete.append(key) + + # Delete in batches + total_keys = len(keys_to_delete) + stats.total_batches = (total_keys + self.batch_size - 1) // self.batch_size + + print("\n=== Starting Cleanup ===") + print( + f"💡 Processing {self.batch_size:,} records at a time from JsonKVStorage\n" + ) + + for batch_idx in range(stats.total_batches): + start_idx = batch_idx * self.batch_size + end_idx = min((batch_idx + 1) * self.batch_size, total_keys) + batch_keys = keys_to_delete[start_idx:end_idx] + + try: + async with storage._storage_lock: + for key in batch_keys: + del storage._data[key] + + # CRITICAL: Set update flag so changes persist to disk + # Without this, deletions remain in-memory only and are lost on exit + await set_all_update_flags(storage.final_namespace) + + # Success + stats.successful_batches += 1 + stats.successfully_deleted += len(batch_keys) + + # Calculate progress + progress = (stats.successfully_deleted / total_keys) * 100 + bar_length = 20 + filled_length = int( + bar_length * stats.successfully_deleted // total_keys + ) + bar = "█" * filled_length + "░" * (bar_length - filled_length) + + print( + f"Batch {batch_idx + 1}/{stats.total_batches}: {bar} " + f"{stats.successfully_deleted:,}/{total_keys:,} ({progress:.1f}%) ✓" + ) + + except Exception as e: + stats.add_error(batch_idx + 1, e, len(batch_keys)) + print( + f"Batch {batch_idx + 1}/{stats.total_batches}: ✗ FAILED - " + f"{type(e).__name__}: {str(e)}" + ) + + async def delete_query_caches_redis( + self, storage, cleanup_type: str, stats: CleanupStats + ): + """Delete query caches from RedisKVStorage + + Args: + storage: RedisKVStorage instance + cleanup_type: 'all', 'query', or 'keywords' + stats: CleanupStats object to track progress + """ + # Build patterns to delete + patterns = [] + for mode in QUERY_MODES: + if cleanup_type == "all": + patterns.append(f"{mode}:query:*") + patterns.append(f"{mode}:keywords:*") + elif cleanup_type == "query": + patterns.append(f"{mode}:query:*") + elif cleanup_type == "keywords": + patterns.append(f"{mode}:keywords:*") + + print("\n=== Starting Cleanup ===") + print(f"💡 Processing Redis keys in batches of {self.batch_size:,}\n") + + batch_idx = 0 + total_deleted = 0 + + async with storage._get_redis_connection() as redis: + for pattern in patterns: + prefixed_pattern = f"{storage.final_namespace}:{pattern}" + cursor = 0 + + while True: + cursor, keys = await redis.scan( + cursor, match=prefixed_pattern, count=self.batch_size + ) + + if keys: + batch_idx += 1 + stats.total_batches += 1 + + try: + # Delete batch using pipeline + pipe = redis.pipeline() + for key in keys: + pipe.delete(key) + await pipe.execute() + + # Success + stats.successful_batches += 1 + stats.successfully_deleted += len(keys) + total_deleted += len(keys) + + # Progress + print( + f"Batch {batch_idx}: Deleted {len(keys):,} keys " + f"(Total: {total_deleted:,}) ✓" + ) + + except Exception as e: + stats.add_error(batch_idx, e, len(keys)) + print( + f"Batch {batch_idx}: ✗ FAILED - " + f"{type(e).__name__}: {str(e)}" + ) + + if cursor == 0: + break + + await asyncio.sleep(0) + + async def delete_query_caches_pg( + self, storage, cleanup_type: str, stats: CleanupStats + ): + """Delete query caches from PostgreSQL + + Args: + storage: PGKVStorage instance + cleanup_type: 'all', 'query', or 'keywords' + stats: CleanupStats object to track progress + """ + from lightrag.kg.postgres_impl import namespace_to_table_name + + table_name = namespace_to_table_name(storage.namespace) + + # Build WHERE conditions + conditions = [] + for mode in QUERY_MODES: + if cleanup_type == "all": + conditions.append(f"id LIKE '{mode}:query:%'") + conditions.append(f"id LIKE '{mode}:keywords:%'") + elif cleanup_type == "query": + conditions.append(f"id LIKE '{mode}:query:%'") + elif cleanup_type == "keywords": + conditions.append(f"id LIKE '{mode}:keywords:%'") + + where_clause = " OR ".join(conditions) + + print("\n=== Starting Cleanup ===") + print("💡 Executing PostgreSQL DELETE query\n") + + try: + query = f""" + DELETE FROM {table_name} + WHERE workspace = $1 + AND ({where_clause}) + """ + + start_time = time.time() + # Fix: Pass dict instead of list for execute() method + await storage.db.execute(query, {"workspace": storage.workspace}) + elapsed = time.time() - start_time + + # PostgreSQL returns deletion count + stats.total_batches = 1 + stats.successful_batches = 1 + stats.successfully_deleted = stats.total_to_delete + + print(f"✓ Deleted {stats.successfully_deleted:,} records in {elapsed:.2f}s") + + except Exception as e: + stats.add_error(1, e, stats.total_to_delete) + print(f"✗ DELETE failed: {type(e).__name__}: {str(e)}") + + async def delete_query_caches_mongo( + self, storage, cleanup_type: str, stats: CleanupStats + ): + """Delete query caches from MongoDB + + Args: + storage: MongoKVStorage instance + cleanup_type: 'all', 'query', or 'keywords' + stats: CleanupStats object to track progress + """ + # Build regex patterns + patterns = [] + for mode in QUERY_MODES: + if cleanup_type == "all": + patterns.append(f"^{mode}:query:") + patterns.append(f"^{mode}:keywords:") + elif cleanup_type == "query": + patterns.append(f"^{mode}:query:") + elif cleanup_type == "keywords": + patterns.append(f"^{mode}:keywords:") + + print("\n=== Starting Cleanup ===") + print("💡 Executing MongoDB deleteMany operations\n") + + total_deleted = 0 + for idx, pattern in enumerate(patterns, 1): + try: + query = {"_id": {"$regex": pattern}} + result = await storage._data.delete_many(query) + deleted_count = result.deleted_count + + stats.total_batches += 1 + stats.successful_batches += 1 + stats.successfully_deleted += deleted_count + total_deleted += deleted_count + + print( + f"Pattern {idx}/{len(patterns)}: Deleted {deleted_count:,} records ✓" + ) + + except Exception as e: + stats.add_error(idx, e, 0) + print( + f"Pattern {idx}/{len(patterns)}: ✗ FAILED - " + f"{type(e).__name__}: {str(e)}" + ) + + print(f"\nTotal deleted: {total_deleted:,} records") + + async def delete_query_caches( + self, storage, storage_name: str, cleanup_type: str, stats: CleanupStats + ): + """Delete query caches from any storage type + + Args: + storage: Storage instance + storage_name: Storage type name + cleanup_type: 'all', 'query', or 'keywords' + stats: CleanupStats object to track progress + """ + if storage_name == "JsonKVStorage": + await self.delete_query_caches_json(storage, cleanup_type, stats) + elif storage_name == "RedisKVStorage": + await self.delete_query_caches_redis(storage, cleanup_type, stats) + elif storage_name == "PGKVStorage": + await self.delete_query_caches_pg(storage, cleanup_type, stats) + elif storage_name == "MongoKVStorage": + await self.delete_query_caches_mongo(storage, cleanup_type, stats) + else: + raise ValueError(f"Unsupported storage type: {storage_name}") + + def print_header(self): + """Print tool header""" + print("\n" + "=" * 60) + print("LLM Query Cache Cleanup Tool - LightRAG") + print("=" * 60) + + def print_storage_types(self): + """Print available storage types""" + print("\nSupported KV Storage Types:") + for key, value in STORAGE_TYPES.items(): + print(f"[{key}] {value}") + + def format_workspace(self, workspace: str) -> str: + """Format workspace name with highlighting + + Args: + workspace: Workspace name (may be empty) + + Returns: + Formatted workspace string with ANSI color codes + """ + if workspace: + return f"{BOLD_CYAN}{workspace}{RESET}" + else: + return f"{BOLD_CYAN}(default){RESET}" + + def print_cache_statistics(self, counts: Dict[str, Dict[str, int]], title: str): + """Print cache statistics in a formatted table + + Args: + counts: Dictionary with counts for each mode and cache_type + title: Title for the statistics display + """ + print(f"\n{title}") + print("┌" + "─" * 12 + "┬" + "─" * 12 + "┬" + "─" * 12 + "┬" + "─" * 12 + "┐") + print(f"│ {'Mode':<10} │ {'Query':<10} │ {'Keywords':<10} │ {'Total':<10} │") + print("├" + "─" * 12 + "┼" + "─" * 12 + "┼" + "─" * 12 + "┼" + "─" * 12 + "┤") + + total_query = 0 + total_keywords = 0 + + for mode in QUERY_MODES: + query_count = counts[mode]["query"] + keywords_count = counts[mode]["keywords"] + mode_total = query_count + keywords_count + + total_query += query_count + total_keywords += keywords_count + + print( + f"│ {mode:<10} │ {query_count:>10,} │ {keywords_count:>10,} │ {mode_total:>10,} │" + ) + + print("├" + "─" * 12 + "┼" + "─" * 12 + "┼" + "─" * 12 + "┼" + "─" * 12 + "┤") + grand_total = total_query + total_keywords + print( + f"│ {'Total':<10} │ {total_query:>10,} │ {total_keywords:>10,} │ {grand_total:>10,} │" + ) + print("└" + "─" * 12 + "┴" + "─" * 12 + "┴" + "─" * 12 + "┴" + "─" * 12 + "┘") + + def calculate_total_to_delete( + self, counts: Dict[str, Dict[str, int]], cleanup_type: str + ) -> int: + """Calculate total number of records to delete + + Args: + counts: Dictionary with counts for each mode and cache_type + cleanup_type: 'all', 'query', or 'keywords' + + Returns: + Total number of records to delete + """ + total = 0 + for mode in QUERY_MODES: + if cleanup_type == "all": + total += counts[mode]["query"] + counts[mode]["keywords"] + elif cleanup_type == "query": + total += counts[mode]["query"] + elif cleanup_type == "keywords": + total += counts[mode]["keywords"] + return total + + def print_cleanup_report(self, stats: CleanupStats): + """Print comprehensive cleanup report + + Args: + stats: CleanupStats object with cleanup results + """ + print("\n" + "=" * 60) + print("Cleanup Complete - Final Report") + print("=" * 60) + + # Overall statistics + print("\n📊 Statistics:") + print(f" Total records to delete: {stats.total_to_delete:,}") + print(f" Total batches: {stats.total_batches:,}") + print(f" Successful batches: {stats.successful_batches:,}") + print(f" Failed batches: {stats.failed_batches:,}") + print(f" Successfully deleted: {stats.successfully_deleted:,}") + print(f" Failed to delete: {stats.failed_to_delete:,}") + + # Success rate + success_rate = ( + (stats.successfully_deleted / stats.total_to_delete * 100) + if stats.total_to_delete > 0 + else 0 + ) + print(f" Success rate: {success_rate:.2f}%") + + # Before/After comparison + print("\n📈 Before/After Comparison:") + total_before = sum( + counts["query"] + counts["keywords"] + for counts in stats.counts_before.values() + ) + total_after = sum( + counts["query"] + counts["keywords"] + for counts in stats.counts_after.values() + ) + print(f" Total caches before: {total_before:,}") + print(f" Total caches after: {total_after:,}") + print(f" Net reduction: {total_before - total_after:,}") + + # Error details + if stats.errors: + print(f"\n⚠️ Errors encountered: {len(stats.errors)}") + print("\nError Details:") + print("-" * 60) + + # Group errors by type + error_types = {} + for error in stats.errors: + err_type = error["error_type"] + error_types[err_type] = error_types.get(err_type, 0) + 1 + + print("\nError Summary:") + for err_type, count in sorted(error_types.items(), key=lambda x: -x[1]): + print(f" - {err_type}: {count} occurrence(s)") + + print("\nFirst 5 errors:") + for i, error in enumerate(stats.errors[:5], 1): + print(f"\n {i}. Batch {error['batch']}") + print(f" Type: {error['error_type']}") + print(f" Message: {error['error_msg']}") + print(f" Records lost: {error['records_lost']:,}") + + if len(stats.errors) > 5: + print(f"\n ... and {len(stats.errors) - 5} more errors") + + print("\n" + "=" * 60) + print(f"{BOLD_RED}⚠️ WARNING: Cleanup completed with errors!{RESET}") + print(" Please review the error details above.") + print("=" * 60) + else: + print("\n" + "=" * 60) + print(f"{BOLD_GREEN}✓ SUCCESS: All records cleaned up successfully!{RESET}") + print("=" * 60) + + async def setup_storage(self) -> tuple: + """Setup and initialize storage + + Returns: + Tuple of (storage_instance, storage_name, workspace) + Returns (None, None, None) if user chooses to exit + """ + print("\n=== Storage Setup ===") + self.print_storage_types() + + # Custom input handling with exit support + while True: + choice = input( + "\nSelect storage type (1-4) (Press Enter to exit): " + ).strip() + + # Check for exit + if choice == "" or choice == "0": + print("\n✓ Cleanup cancelled by user") + return None, None, None + + # Check if choice is valid + if choice in STORAGE_TYPES: + break + + print( + f"✗ Invalid choice. Please enter one of: {', '.join(STORAGE_TYPES.keys())}" + ) + + storage_name = STORAGE_TYPES[choice] + + # Check configuration (warnings only, doesn't block) + print("\nChecking configuration...") + self.check_env_vars(storage_name) + + # Get workspace + workspace = self.get_workspace_for_storage(storage_name) + + # Initialize storage (real validation point) + print("\nInitializing storage...") + try: + storage = await self.initialize_storage(storage_name, workspace) + print(f"- Storage Type: {storage_name}") + print(f"- Workspace: {workspace if workspace else '(default)'}") + print("- Connection Status: ✓ Success") + + except Exception as e: + print(f"✗ Initialization failed: {e}") + print(f"\nFor {storage_name}, you can configure using:") + print(" 1. Environment variables (highest priority)") + + # Show specific environment variable requirements + if storage_name in STORAGE_ENV_REQUIREMENTS: + for var in STORAGE_ENV_REQUIREMENTS[storage_name]: + print(f" - {var}") + + print(" 2. config.ini file (medium priority)") + if storage_name == "RedisKVStorage": + print(" [redis]") + print(" uri = redis://localhost:6379") + elif storage_name == "PGKVStorage": + print(" [postgres]") + print(" host = localhost") + print(" port = 5432") + print(" user = postgres") + print(" password = yourpassword") + print(" database = lightrag") + elif storage_name == "MongoKVStorage": + print(" [mongodb]") + print(" uri = mongodb://root:root@localhost:27017/") + print(" database = LightRAG") + + return None, None, None + + return storage, storage_name, workspace + + async def run(self): + """Run the cleanup tool""" + try: + # Initialize shared storage (REQUIRED for storage classes to work) + from lightrag.kg.shared_storage import initialize_share_data + + initialize_share_data(workers=1) + + # Print header + self.print_header() + + # Setup storage + self.storage, storage_name, self.workspace = await self.setup_storage() + + # Check if user cancelled + if self.storage is None: + return + + # Count query caches + print("\nCounting query cache records...") + try: + counts = await self.count_query_caches(self.storage, storage_name) + except Exception as e: + print(f"✗ Counting failed: {e}") + await self.storage.finalize() + return + + # Initialize stats + stats = CleanupStats() + stats.initialize_counts() + stats.counts_before = counts + + # Print statistics + self.print_cache_statistics( + counts, "📊 Query Cache Statistics (Before Cleanup):" + ) + + # Calculate total + total_caches = sum( + counts[mode]["query"] + counts[mode]["keywords"] for mode in QUERY_MODES + ) + + if total_caches == 0: + print("\n⚠️ No query caches found in storage") + await self.storage.finalize() + return + + # Select cleanup type + print("\n=== Cleanup Options ===") + print("[1] Delete all query caches (both query and keywords)") + print("[2] Delete query caches only (keep keywords)") + print("[3] Delete keywords caches only (keep query)") + print("[0] Cancel") + + while True: + choice = input("\nSelect cleanup option (0-3): ").strip() + + if choice == "0" or choice == "": + print("\n✓ Cleanup cancelled") + await self.storage.finalize() + return + elif choice == "1": + cleanup_type = "all" + break + elif choice == "2": + cleanup_type = "query" + break + elif choice == "3": + cleanup_type = "keywords" + break + else: + print("✗ Invalid choice. Please enter 0, 1, 2, or 3") + + # Calculate total to delete + stats.total_to_delete = self.calculate_total_to_delete(counts, cleanup_type) + + # Confirm deletion + print("\n" + "=" * 60) + print("Cleanup Confirmation") + print("=" * 60) + print( + f"Storage: {BOLD_CYAN}{storage_name}{RESET} " + f"(workspace: {self.format_workspace(self.workspace)})" + ) + print(f"Cleanup Type: {BOLD_CYAN}{cleanup_type}{RESET}") + print( + f"Records to Delete: {BOLD_RED}{stats.total_to_delete:,}{RESET} / {total_caches:,}" + ) + + if cleanup_type == "all": + print( + f"\n{BOLD_RED}⚠️ WARNING: This will delete ALL query caches across all modes!{RESET}" + ) + elif cleanup_type == "query": + print("\n⚠️ This will delete query caches only (keywords will be kept)") + elif cleanup_type == "keywords": + print("\n⚠️ This will delete keywords caches only (query will be kept)") + + confirm = input("\nContinue with deletion? (y/n): ").strip().lower() + if confirm != "y": + print("\n✓ Cleanup cancelled") + await self.storage.finalize() + return + + # Perform deletion + await self.delete_query_caches( + self.storage, storage_name, cleanup_type, stats + ) + + # Persist changes + print("\nPersisting changes to storage...") + try: + await self.storage.index_done_callback() + print("✓ Changes persisted successfully") + except Exception as e: + print(f"✗ Persist failed: {e}") + stats.add_error(0, e, 0) + + # Count again to verify + print("\nVerifying cleanup results...") + try: + stats.counts_after = await self.count_query_caches( + self.storage, storage_name + ) + except Exception as e: + print(f"⚠️ Verification failed: {e}") + # Use zero counts if verification fails + stats.counts_after = { + mode: {"query": 0, "keywords": 0} for mode in QUERY_MODES + } + + # Print final report + self.print_cleanup_report(stats) + + # Print after statistics + self.print_cache_statistics( + stats.counts_after, "\n📊 Query Cache Statistics (After Cleanup):" + ) + + # Cleanup + await self.storage.finalize() + + except KeyboardInterrupt: + print("\n\n✗ Cleanup interrupted by user") + except Exception as e: + print(f"\n✗ Cleanup failed: {e}") + import traceback + + traceback.print_exc() + finally: + # Ensure cleanup + if self.storage: + try: + await self.storage.finalize() + except Exception: + pass + + # Finalize shared storage + try: + from lightrag.kg.shared_storage import finalize_share_data + + finalize_share_data() + except Exception: + pass + + +async def main(): + """Main entry point""" + tool = CleanupTool() + await tool.run() + + +if __name__ == "__main__": + asyncio.run(main()) From 37b711890173d1646193622c1afa04f4083ba43c Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 14:17:56 +0800 Subject: [PATCH 36/62] Fix table alignment and add validation for empty cleanup selections --- lightrag/tools/clean_llm_query_cache.py | 30 ++++++++++++++++++++----- 1 file changed, 24 insertions(+), 6 deletions(-) diff --git a/lightrag/tools/clean_llm_query_cache.py b/lightrag/tools/clean_llm_query_cache.py index caa1ad06..1b688c29 100644 --- a/lightrag/tools/clean_llm_query_cache.py +++ b/lightrag/tools/clean_llm_query_cache.py @@ -719,7 +719,7 @@ class CleanupTool: """ print(f"\n{title}") print("┌" + "─" * 12 + "┬" + "─" * 12 + "┬" + "─" * 12 + "┬" + "─" * 12 + "┐") - print(f"│ {'Mode':<10} │ {'Query':<10} │ {'Keywords':<10} │ {'Total':<10} │") + print(f"│ {'Mode':<10} │ {'Query':>10} │ {'Keywords':>10} │ {'Total':>10} │") print("├" + "─" * 12 + "┼" + "─" * 12 + "┼" + "─" * 12 + "┼" + "─" * 12 + "┤") total_query = 0 @@ -981,18 +981,36 @@ class CleanupTool: return elif choice == "1": cleanup_type = "all" - break elif choice == "2": cleanup_type = "query" - break elif choice == "3": cleanup_type = "keywords" - break else: print("✗ Invalid choice. Please enter 0, 1, 2, or 3") + continue - # Calculate total to delete - stats.total_to_delete = self.calculate_total_to_delete(counts, cleanup_type) + # Calculate total to delete for the selected type + stats.total_to_delete = self.calculate_total_to_delete( + counts, cleanup_type + ) + + # Check if there are any records to delete + if stats.total_to_delete == 0: + if cleanup_type == "all": + print(f"\n{BOLD_RED}⚠️ No query caches found to delete!{RESET}") + elif cleanup_type == "query": + print( + f"\n{BOLD_RED}⚠️ No query caches found to delete! (Only keywords exist){RESET}" + ) + elif cleanup_type == "keywords": + print( + f"\n{BOLD_RED}⚠️ No keywords caches found to delete! (Only query caches exist){RESET}" + ) + print(" Please select a different cleanup option.\n") + continue + + # Valid selection with records to delete + break # Confirm deletion print("\n" + "=" * 60) From 1f9d0735c34a5fafeb65808773a16b9fb485bcd1 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 14:42:22 +0800 Subject: [PATCH 37/62] Bump API version to 0253 --- lightrag/api/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lightrag/api/__init__.py b/lightrag/api/__init__.py index 02b01dcc..d9cb8673 100644 --- a/lightrag/api/__init__.py +++ b/lightrag/api/__init__.py @@ -1 +1 @@ -__api_version__ = "0252" +__api_version__ = "0253" From d137ba584338ba232602d0d8c3b259ccd64c0f28 Mon Sep 17 00:00:00 2001 From: Tong Da Date: Sun, 9 Nov 2025 14:52:42 +0800 Subject: [PATCH 38/62] support async chunking func to improve processing performance when a heavy `chunking_func` is passed in by user --- lightrag/lightrag.py | 28 ++++++++++++++++++++-------- 1 file changed, 20 insertions(+), 8 deletions(-) diff --git a/lightrag/lightrag.py b/lightrag/lightrag.py index acf157da..d56687c2 100644 --- a/lightrag/lightrag.py +++ b/lightrag/lightrag.py @@ -1,5 +1,6 @@ from __future__ import annotations +from inspect import iscoroutinefunction import traceback import asyncio import configparser @@ -1757,14 +1758,8 @@ class LightRAG: content = content_data["content"] # Generate chunks from document - chunks: dict[str, Any] = { - compute_mdhash_id(dp["content"], prefix="chunk-"): { - **dp, - "full_doc_id": doc_id, - "file_path": file_path, # Add file path to each chunk - "llm_cache_list": [], # Initialize empty LLM cache list for each chunk - } - for dp in self.chunking_func( + if iscoroutinefunction(self.chunking_func): + chunks = await self.chunking_func( self.tokenizer, content, split_by_character, @@ -1772,6 +1767,23 @@ class LightRAG: self.chunk_overlap_token_size, self.chunk_token_size, ) + else: + chunks = self.chunking_func( + self.tokenizer, + content, + split_by_character, + split_by_character_only, + self.chunk_overlap_token_size, + self.chunk_token_size, + ) + chunks: dict[str, Any] = { + compute_mdhash_id(dp["content"], prefix="chunk-"): { + **dp, + "full_doc_id": doc_id, + "file_path": file_path, # Add file path to each chunk + "llm_cache_list": [], # Initialize empty LLM cache list for each chunk + } + for dp in chunks } if not chunks: From 913fa1e4153e39f4f8af1a18810af52cc459df07 Mon Sep 17 00:00:00 2001 From: yangdx Date: Sun, 9 Nov 2025 23:04:04 +0800 Subject: [PATCH 39/62] Add concurrency warning for JsonKVStorage in cleanup tool --- lightrag/tools/clean_llm_query_cache.py | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/lightrag/tools/clean_llm_query_cache.py b/lightrag/tools/clean_llm_query_cache.py index 1b688c29..eca658c7 100644 --- a/lightrag/tools/clean_llm_query_cache.py +++ b/lightrag/tools/clean_llm_query_cache.py @@ -873,6 +873,31 @@ class CleanupTool: storage_name = STORAGE_TYPES[choice] + # Special warning for JsonKVStorage about concurrent access + if storage_name == "JsonKVStorage": + print("\n" + "=" * 60) + print(f"{BOLD_RED}⚠️ IMPORTANT WARNING - JsonKVStorage Concurrency{RESET}") + print("=" * 60) + print("\nJsonKVStorage is an in-memory database that does NOT support") + print("concurrent access to the same file by multiple programs.") + print("\nBefore proceeding, please ensure that:") + print(" • LightRAG Server is completely shut down") + print(" • No other programs are accessing the storage files") + print("\n" + "=" * 60) + + confirm = ( + input("\nHas LightRAG Server been shut down? (yes/no): ") + .strip() + .lower() + ) + if confirm != "yes": + print( + "\n✓ Operation cancelled - Please shut down LightRAG Server first" + ) + return None, None, None + + print("✓ Proceeding with JsonKVStorage cleanup...") + # Check configuration (warnings only, doesn't block) print("\nChecking configuration...") self.check_env_vars(storage_name) From e8f5f57ec7601b0779303fce090dddf93f77b11f Mon Sep 17 00:00:00 2001 From: yangdx Date: Mon, 10 Nov 2025 11:54:48 +0800 Subject: [PATCH 40/62] Update qdrant-client minimum version from 1.7.0 to 1.11.0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Bump qdrant-client to >=1.11.0 • Update pyproject.toml dependency • Update requirements files • Sync uv.lock with new version • Maintain <2.0.0 upper bound --- pyproject.toml | 2 +- requirements-offline-storage.txt | 2 +- requirements-offline.txt | 2 +- uv.lock | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index d0052b74..29f7c58e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -98,7 +98,7 @@ offline-storage = [ "pymilvus>=2.6.2,<3.0.0", "pymongo>=4.0.0,<5.0.0", "asyncpg>=0.29.0,<1.0.0", - "qdrant-client>=1.7.0,<2.0.0", + "qdrant-client>=1.11.0,<2.0.0", ] offline-llm = [ diff --git a/requirements-offline-storage.txt b/requirements-offline-storage.txt index 6c960623..13a9c0e2 100644 --- a/requirements-offline-storage.txt +++ b/requirements-offline-storage.txt @@ -12,5 +12,5 @@ asyncpg>=0.29.0,<1.0.0 neo4j>=5.0.0,<7.0.0 pymilvus>=2.6.2,<3.0.0 pymongo>=4.0.0,<5.0.0 -qdrant-client>=1.7.0,<2.0.0 +qdrant-client>=1.11.0,<2.0.0 redis>=5.0.0,<8.0.0 diff --git a/requirements-offline.txt b/requirements-offline.txt index 8dfb1b01..0582eaca 100644 --- a/requirements-offline.txt +++ b/requirements-offline.txt @@ -27,7 +27,7 @@ pymongo>=4.0.0,<5.0.0 pypdf2>=3.0.0 python-docx>=0.8.11,<2.0.0 python-pptx>=0.6.21,<2.0.0 -qdrant-client>=1.7.0,<2.0.0 +qdrant-client>=1.11.0,<2.0.0 redis>=5.0.0,<8.0.0 voyageai>=0.2.0,<1.0.0 zhipuai>=2.0.0,<3.0.0 diff --git a/uv.lock b/uv.lock index 003d86c4..63fa0a78 100644 --- a/uv.lock +++ b/uv.lock @@ -2083,7 +2083,7 @@ requires-dist = [ { name = "python-multipart", marker = "extra == 'api'" }, { name = "python-pptx", marker = "extra == 'offline-docs'", specifier = ">=0.6.21,<2.0.0" }, { name = "pytz", marker = "extra == 'api'" }, - { name = "qdrant-client", marker = "extra == 'offline-storage'", specifier = ">=1.7.0,<2.0.0" }, + { name = "qdrant-client", marker = "extra == 'offline-storage'", specifier = ">=1.11.0,<2.0.0" }, { name = "ragas", marker = "extra == 'evaluation'", specifier = ">=0.3.7" }, { name = "redis", marker = "extra == 'offline-storage'", specifier = ">=5.0.0,<8.0.0" }, { name = "setuptools" }, From 245df75d9c4cf0f69b5c85c9b96d7c506fdae779 Mon Sep 17 00:00:00 2001 From: Tong Da Date: Mon, 10 Nov 2025 20:49:50 +0800 Subject: [PATCH 41/62] easier version: detect chunking_func result is coroutine or not --- lightrag/lightrag.py | 30 +++++++++++------------------- 1 file changed, 11 insertions(+), 19 deletions(-) diff --git a/lightrag/lightrag.py b/lightrag/lightrag.py index d56687c2..af953fdf 100644 --- a/lightrag/lightrag.py +++ b/lightrag/lightrag.py @@ -1,6 +1,5 @@ from __future__ import annotations -from inspect import iscoroutinefunction import traceback import asyncio import configparser @@ -1758,24 +1757,17 @@ class LightRAG: content = content_data["content"] # Generate chunks from document - if iscoroutinefunction(self.chunking_func): - chunks = await self.chunking_func( - self.tokenizer, - content, - split_by_character, - split_by_character_only, - self.chunk_overlap_token_size, - self.chunk_token_size, - ) - else: - chunks = self.chunking_func( - self.tokenizer, - content, - split_by_character, - split_by_character_only, - self.chunk_overlap_token_size, - self.chunk_token_size, - ) + chunks = self.chunking_func( + self.tokenizer, + content, + split_by_character, + split_by_character_only, + self.chunk_overlap_token_size, + self.chunk_token_size, + ) + # 判断chunks是否是异步异步函数的返回 + if asyncio.iscoroutine(chunks): + chunks = await chunks chunks: dict[str, Any] = { compute_mdhash_id(dp["content"], prefix="chunk-"): { **dp, From fdcb4d0b6d6bc66580868f3b74f6dbfe41ffa9a4 Mon Sep 17 00:00:00 2001 From: yangdx Date: Tue, 11 Nov 2025 01:38:09 +0800 Subject: [PATCH 42/62] Replace PyPDF2 with pypdf for PDF processing - Update import from PyPDF2 to pypdf - Change dependency to pypdf>=6.1.0 - Update all requirements files - Remove PyPDF2 from lock file - Use modern pypdf library --- lightrag/api/routers/document_routes.py | 6 +++--- pyproject.toml | 2 +- requirements-offline-docs.txt | 2 +- requirements-offline.txt | 2 +- uv.lock | 15 +++------------ 5 files changed, 9 insertions(+), 18 deletions(-) diff --git a/lightrag/api/routers/document_routes.py b/lightrag/api/routers/document_routes.py index 3e479a53..f86bcea8 100644 --- a/lightrag/api/routers/document_routes.py +++ b/lightrag/api/routers/document_routes.py @@ -1081,11 +1081,11 @@ async def pipeline_enqueue_file( result = converter.convert(file_path) content = result.document.export_to_markdown() else: - if not pm.is_installed("pypdf2"): # type: ignore - pm.install("pypdf2") + if not pm.is_installed("pypdf"): # type: ignore + pm.install("pypdf") if not pm.is_installed("pycryptodome"): # type: ignore pm.install("pycryptodome") - from PyPDF2 import PdfReader # type: ignore + from pypdf import PdfReader # type: ignore from io import BytesIO pdf_file = BytesIO(file) diff --git a/pyproject.toml b/pyproject.toml index 29f7c58e..81e44aff 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -86,7 +86,7 @@ offline-docs = [ # Document processing dependencies "openpyxl>=3.0.0,<4.0.0", "pycryptodome>=3.0.0,<4.0.0", - "pypdf2>=3.0.0", + "pypdf>=6.1.0", "python-docx>=0.8.11,<2.0.0", "python-pptx>=0.6.21,<2.0.0", ] diff --git a/requirements-offline-docs.txt b/requirements-offline-docs.txt index 14d782fd..12f02080 100644 --- a/requirements-offline-docs.txt +++ b/requirements-offline-docs.txt @@ -10,6 +10,6 @@ # Document processing dependencies (with version constraints matching pyproject.toml) openpyxl>=3.0.0,<4.0.0 pycryptodome>=3.0.0,<4.0.0 -pypdf2>=3.0.0 +pypdf>=6.1.0 python-docx>=0.8.11,<2.0.0 python-pptx>=0.6.21,<2.0.0 diff --git a/requirements-offline.txt b/requirements-offline.txt index 0582eaca..50848093 100644 --- a/requirements-offline.txt +++ b/requirements-offline.txt @@ -24,7 +24,7 @@ openpyxl>=3.0.0,<4.0.0 pycryptodome>=3.0.0,<4.0.0 pymilvus>=2.6.2,<3.0.0 pymongo>=4.0.0,<5.0.0 -pypdf2>=3.0.0 +pypdf>=6.1.0 python-docx>=0.8.11,<2.0.0 python-pptx>=0.6.21,<2.0.0 qdrant-client>=1.11.0,<2.0.0 diff --git a/uv.lock b/uv.lock index 63fa0a78..b942632f 100644 --- a/uv.lock +++ b/uv.lock @@ -1981,7 +1981,7 @@ offline = [ { name = "pycryptodome" }, { name = "pymilvus" }, { name = "pymongo" }, - { name = "pypdf2" }, + { name = "pypdf" }, { name = "python-docx" }, { name = "python-pptx" }, { name = "qdrant-client" }, @@ -1992,7 +1992,7 @@ offline = [ offline-docs = [ { name = "openpyxl" }, { name = "pycryptodome" }, - { name = "pypdf2" }, + { name = "pypdf" }, { name = "python-docx" }, { name = "python-pptx" }, ] @@ -2071,7 +2071,7 @@ requires-dist = [ { name = "pyjwt", marker = "extra == 'api'", specifier = ">=2.8.0,<3.0.0" }, { name = "pymilvus", marker = "extra == 'offline-storage'", specifier = ">=2.6.2,<3.0.0" }, { name = "pymongo", marker = "extra == 'offline-storage'", specifier = ">=4.0.0,<5.0.0" }, - { name = "pypdf2", marker = "extra == 'offline-docs'", specifier = ">=3.0.0" }, + { name = "pypdf", marker = "extra == 'offline-docs'", specifier = ">=6.1.0" }, { name = "pypinyin" }, { name = "pypinyin", marker = "extra == 'api'" }, { name = "pytest", marker = "extra == 'evaluation'", specifier = ">=8.4.2" }, @@ -3977,15 +3977,6 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/fa/ed/494fd0cc1190a7c335e6958eeaee6f373a281869830255c2ed4785dac135/pypdf-6.1.3-py3-none-any.whl", hash = "sha256:eb049195e46f014fc155f566fa20e09d70d4646a9891164ac25fa0cbcfcdbcb5", size = 323863, upload-time = "2025-10-22T16:13:44.174Z" }, ] -[[package]] -name = "pypdf2" -version = "3.0.1" -source = { registry = "https://pypi.org/simple" } -sdist = { url = "https://files.pythonhosted.org/packages/9f/bb/18dc3062d37db6c491392007dfd1a7f524bb95886eb956569ac38a23a784/PyPDF2-3.0.1.tar.gz", hash = "sha256:a74408f69ba6271f71b9352ef4ed03dc53a31aa404d29b5d31f53bfecfee1440", size = 227419, upload-time = "2022-12-31T10:36:13.13Z" } -wheels = [ - { url = "https://files.pythonhosted.org/packages/8e/5e/c86a5643653825d3c913719e788e41386bee415c2b87b4f955432f2de6b2/pypdf2-3.0.1-py3-none-any.whl", hash = "sha256:d16e4205cfee272fbdc0568b68d82be796540b1537508cef59388f839c191928", size = 232572, upload-time = "2022-12-31T10:36:10.327Z" }, -] - [[package]] name = "pypinyin" version = "0.55.0" From 1ffb5338128a32e2760280cbdd54e3329853a52e Mon Sep 17 00:00:00 2001 From: yangdx Date: Tue, 11 Nov 2025 12:02:37 +0800 Subject: [PATCH 43/62] Update env.example --- env.example | 39 +++++++++++++++++++++++---------------- 1 file changed, 23 insertions(+), 16 deletions(-) diff --git a/env.example b/env.example index 534bd22a..4590ceee 100644 --- a/env.example +++ b/env.example @@ -172,6 +172,8 @@ MAX_PARALLEL_INSERT=2 ### LLM Configuration ### LLM_BINDING type: openai, ollama, lollms, azure_openai, aws_bedrock, gemini ### LLM_BINDING_HOST: host only for Ollama, endpoint for other LLM service +### If LightRAG deployed in Docker: +### uses host.docker.internal instead of localhost in LLM_BINDING_HOST ########################################################################### ### LLM request timeout setting for all llm (0 means no timeout for Ollma) # LLM_TIMEOUT=180 @@ -181,7 +183,7 @@ LLM_MODEL=gpt-4o LLM_BINDING_HOST=https://api.openai.com/v1 LLM_BINDING_API_KEY=your_api_key -### Optional for Azure +### Env vars for Azure openai # AZURE_OPENAI_API_VERSION=2024-08-01-preview # AZURE_OPENAI_DEPLOYMENT=gpt-4o @@ -196,22 +198,16 @@ LLM_BINDING_API_KEY=your_api_key # LLM_MODEL=gemini-flash-latest # LLM_BINDING_API_KEY=your_gemini_api_key # LLM_BINDING_HOST=https://generativelanguage.googleapis.com -GEMINI_LLM_THINKING_CONFIG='{"thinking_budget": 0, "include_thoughts": false}' + +### use the following command to see all support options for OpenAI, azure_openai or OpenRouter +### lightrag-server --llm-binding gemini --help +### Gemini Specific Parameters # GEMINI_LLM_MAX_OUTPUT_TOKENS=9000 # GEMINI_LLM_TEMPERATURE=0.7 - -### OpenAI Compatible API Specific Parameters -### Increased temperature values may mitigate infinite inference loops in certain LLM, such as Qwen3-30B. -# OPENAI_LLM_TEMPERATURE=0.9 -### Set the max_tokens to mitigate endless output of some LLM (less than LLM_TIMEOUT * llm_output_tokens/second, i.e. 9000 = 180s * 50 tokens/s) -### Typically, max_tokens does not include prompt content, though some models, such as Gemini Models, are exceptions -### For vLLM/SGLang deployed models, or most of OpenAI compatible API provider -# OPENAI_LLM_MAX_TOKENS=9000 -### For OpenAI o1-mini or newer modles -OPENAI_LLM_MAX_COMPLETION_TOKENS=9000 - -#### OpenAI's new API utilizes max_completion_tokens instead of max_tokens -# OPENAI_LLM_MAX_COMPLETION_TOKENS=9000 +### Enable Thinking +# GEMINI_LLM_THINKING_CONFIG='{"thinking_budget": -1, "include_thoughts": true}' +### Disable Thinking +# GEMINI_LLM_THINKING_CONFIG='{"thinking_budget": 0, "include_thoughts": false}' ### use the following command to see all support options for OpenAI, azure_openai or OpenRouter ### lightrag-server --llm-binding openai --help @@ -222,8 +218,17 @@ OPENAI_LLM_MAX_COMPLETION_TOKENS=9000 ### Qwen3 Specific Parameters deploy by vLLM # OPENAI_LLM_EXTRA_BODY='{"chat_template_kwargs": {"enable_thinking": false}}' +### OpenAI Compatible API Specific Parameters +### Increased temperature values may mitigate infinite inference loops in certain LLM, such as Qwen3-30B. +# OPENAI_LLM_TEMPERATURE=0.9 +### Set the max_tokens to mitigate endless output of some LLM (less than LLM_TIMEOUT * llm_output_tokens/second, i.e. 9000 = 180s * 50 tokens/s) +### Typically, max_tokens does not include prompt content +### For vLLM/SGLang deployed models, or most of OpenAI compatible API provider +# OPENAI_LLM_MAX_TOKENS=9000 +### For OpenAI o1-mini or newer modles utilizes max_completion_tokens instead of max_tokens +OPENAI_LLM_MAX_COMPLETION_TOKENS=9000 + ### use the following command to see all support options for Ollama LLM -### If LightRAG deployed in Docker uses host.docker.internal instead of localhost in LLM_BINDING_HOST ### lightrag-server --llm-binding ollama --help ### Ollama Server Specific Parameters ### OLLAMA_LLM_NUM_CTX must be provided, and should at least larger than MAX_TOTAL_TOKENS + 2000 @@ -240,6 +245,8 @@ OLLAMA_LLM_NUM_CTX=32768 ### Embedding Configuration (Should not be changed after the first file processed) ### EMBEDDING_BINDING: ollama, openai, azure_openai, jina, lollms, aws_bedrock ### EMBEDDING_BINDING_HOST: host only for Ollama, endpoint for other Embedding service +### If LightRAG deployed in Docker: +### uses host.docker.internal instead of localhost in EMBEDDING_BINDING_HOST ####################################################################################### # EMBEDDING_TIMEOUT=30 From d1f4b6e515a7cd63555b93af3b93c685d60bb299 Mon Sep 17 00:00:00 2001 From: yangdx Date: Wed, 12 Nov 2025 00:11:13 +0800 Subject: [PATCH 44/62] Add data sanitization to JSON writing to prevent UTF-8 encoding errors MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Add _sanitize_json_data helper function • Recursively clean strings in data • Sanitize before JSON serialization • Prevent encoding-related crashes • Use existing sanitize_text_for_encoding --- lightrag/utils.py | 23 ++++++++++++++++++++++- 1 file changed, 22 insertions(+), 1 deletion(-) diff --git a/lightrag/utils.py b/lightrag/utils.py index 460ede3c..064e4804 100644 --- a/lightrag/utils.py +++ b/lightrag/utils.py @@ -927,9 +927,30 @@ def load_json(file_name): return json.load(f) +def _sanitize_json_data(data: Any) -> Any: + """Recursively sanitize all string values in data structure for safe UTF-8 encoding + + Args: + data: Data to sanitize (dict, list, str, or other types) + + Returns: + Sanitized data with all strings cleaned of problematic characters + """ + if isinstance(data, dict): + return {k: _sanitize_json_data(v) for k, v in data.items()} + elif isinstance(data, list): + return [_sanitize_json_data(item) for item in data] + elif isinstance(data, str): + return sanitize_text_for_encoding(data, replacement_char="") + else: + return data + + def write_json(json_obj, file_name): + # Sanitize data before writing to prevent UTF-8 encoding errors + sanitized_obj = _sanitize_json_data(json_obj) with open(file_name, "w", encoding="utf-8") as f: - json.dump(json_obj, f, indent=2, ensure_ascii=False) + json.dump(sanitized_obj, f, indent=2, ensure_ascii=False) class TokenizerInterface(Protocol): From 6918a88f927bdf123826b1a5f0dbfd64bf6b39f8 Mon Sep 17 00:00:00 2001 From: yangdx Date: Wed, 12 Nov 2025 00:38:47 +0800 Subject: [PATCH 45/62] Add specialized JSON string sanitizer to prevent UTF-8 encoding errors MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Remove surrogate characters (U+D800-DFFF) • Filter Unicode non-characters • Direct char-by-char filtering --- lightrag/utils.py | 33 ++++++++++++++++++++++++++++++++- 1 file changed, 32 insertions(+), 1 deletion(-) diff --git a/lightrag/utils.py b/lightrag/utils.py index 064e4804..7232a91c 100644 --- a/lightrag/utils.py +++ b/lightrag/utils.py @@ -927,6 +927,37 @@ def load_json(file_name): return json.load(f) +def _sanitize_string_for_json(text: str) -> str: + """Remove characters that cannot be encoded in UTF-8 for JSON serialization. + + This is a simpler sanitizer specifically for JSON that directly removes + problematic characters without attempting to encode first. + + Args: + text: String to sanitize + + Returns: + Sanitized string safe for UTF-8 encoding in JSON + """ + if not text: + return text + + # Directly filter out problematic characters without pre-validation + sanitized = "" + for char in text: + code_point = ord(char) + # Skip surrogate characters (U+D800 to U+DFFF) - main cause of encoding errors + if 0xD800 <= code_point <= 0xDFFF: + continue + # Skip other non-characters in Unicode + elif code_point == 0xFFFE or code_point == 0xFFFF: + continue + else: + sanitized += char + + return sanitized + + def _sanitize_json_data(data: Any) -> Any: """Recursively sanitize all string values in data structure for safe UTF-8 encoding @@ -941,7 +972,7 @@ def _sanitize_json_data(data: Any) -> Any: elif isinstance(data, list): return [_sanitize_json_data(item) for item in data] elif isinstance(data, str): - return sanitize_text_for_encoding(data, replacement_char="") + return _sanitize_string_for_json(data) else: return data From f28a0c25b178d3347f9f72bf9e63242cefc1ea53 Mon Sep 17 00:00:00 2001 From: yangdx Date: Wed, 12 Nov 2025 00:50:18 +0800 Subject: [PATCH 46/62] Improve JSON data sanitization to handle tuples and dict keys - Sanitize dictionary keys - Preserve tuple types - Handle nested structures better --- lightrag/utils.py | 23 +++++++++++++++++++---- 1 file changed, 19 insertions(+), 4 deletions(-) diff --git a/lightrag/utils.py b/lightrag/utils.py index 7232a91c..4bfd20f2 100644 --- a/lightrag/utils.py +++ b/lightrag/utils.py @@ -961,19 +961,34 @@ def _sanitize_string_for_json(text: str) -> str: def _sanitize_json_data(data: Any) -> Any: """Recursively sanitize all string values in data structure for safe UTF-8 encoding + Handles all JSON-serializable types including: + - Dictionary keys and values + - Lists and tuples (preserves type) + - Nested structures + - Strings at any level + Args: - data: Data to sanitize (dict, list, str, or other types) + data: Data to sanitize (dict, list, tuple, str, or other types) Returns: Sanitized data with all strings cleaned of problematic characters """ if isinstance(data, dict): - return {k: _sanitize_json_data(v) for k, v in data.items()} - elif isinstance(data, list): - return [_sanitize_json_data(item) for item in data] + # Sanitize both keys and values + return { + _sanitize_string_for_json(k) + if isinstance(k, str) + else k: _sanitize_json_data(v) + for k, v in data.items() + } + elif isinstance(data, (list, tuple)): + # Handle both lists and tuples, preserve original type + sanitized = [_sanitize_json_data(item) for item in data] + return type(data)(sanitized) elif isinstance(data, str): return _sanitize_string_for_json(data) else: + # Numbers, booleans, None, etc. - return as-is return data From 8c07c91833041f0c98b29189a5f4b9259aad9ec2 Mon Sep 17 00:00:00 2001 From: yangdx Date: Wed, 12 Nov 2025 12:19:30 +0800 Subject: [PATCH 47/62] Remove deprecated response_type parameter from query settings - Bump API version to 0254 - Remove response format UI controls - Hard-code response_type in query params - Add migration for version 19 - Clean up settings store structure --- lightrag/api/__init__.py | 2 +- .../components/retrieval/QuerySettings.tsx | 41 ------------------- .../src/features/RetrievalTesting.tsx | 1 + lightrag_webui/src/stores/settings.ts | 9 +++- 4 files changed, 9 insertions(+), 44 deletions(-) diff --git a/lightrag/api/__init__.py b/lightrag/api/__init__.py index d9cb8673..8fdc9fae 100644 --- a/lightrag/api/__init__.py +++ b/lightrag/api/__init__.py @@ -1 +1 @@ -__api_version__ = "0253" +__api_version__ = "0254" diff --git a/lightrag_webui/src/components/retrieval/QuerySettings.tsx b/lightrag_webui/src/components/retrieval/QuerySettings.tsx index 4ffebbb1..0b0096c0 100644 --- a/lightrag_webui/src/components/retrieval/QuerySettings.tsx +++ b/lightrag_webui/src/components/retrieval/QuerySettings.tsx @@ -40,7 +40,6 @@ export default function QuerySettings() { // Default values for reset functionality const defaultValues = useMemo(() => ({ mode: 'mix' as QueryMode, - response_type: 'Multiple Paragraphs', top_k: 40, chunk_top_k: 20, max_entity_tokens: 6000, @@ -153,46 +152,6 @@ export default function QuerySettings() { - {/* Response Format */} - <> - - - - - - -

{t('retrievePanel.querySettings.responseFormatTooltip')}

- - - -
- - handleReset('response_type')} - title="Reset to default (Multiple Paragraphs)" - /> -
- - {/* Top K */} <> diff --git a/lightrag_webui/src/features/RetrievalTesting.tsx b/lightrag_webui/src/features/RetrievalTesting.tsx index 3fe8ec13..d7a475f6 100644 --- a/lightrag_webui/src/features/RetrievalTesting.tsx +++ b/lightrag_webui/src/features/RetrievalTesting.tsx @@ -357,6 +357,7 @@ export default function RetrievalTesting() { const queryParams = { ...state.querySettings, query: actualQuery, + response_type: 'Multiple Paragraphs', conversation_history: effectiveHistoryTurns > 0 ? prevMessages .filter((m) => m.isError !== true) diff --git a/lightrag_webui/src/stores/settings.ts b/lightrag_webui/src/stores/settings.ts index 966a2504..ac300af8 100644 --- a/lightrag_webui/src/stores/settings.ts +++ b/lightrag_webui/src/stores/settings.ts @@ -123,7 +123,6 @@ const useSettingsStoreBase = create()( querySettings: { mode: 'global', - response_type: 'Multiple Paragraphs', top_k: 40, chunk_top_k: 20, max_entity_tokens: 6000, @@ -239,7 +238,7 @@ const useSettingsStoreBase = create()( { name: 'settings-storage', storage: createJSONStorage(() => localStorage), - version: 18, + version: 19, migrate: (state: any, version: number) => { if (version < 2) { state.showEdgeLabel = false @@ -336,6 +335,12 @@ const useSettingsStoreBase = create()( // Add userPromptHistory field for older versions state.userPromptHistory = [] } + if (version < 19) { + // Remove deprecated response_type parameter + if (state.querySettings) { + delete state.querySettings.response_type + } + } return state } } From 777c987371d5183aee17d1daf172ca192e4fc9d1 Mon Sep 17 00:00:00 2001 From: yangdx Date: Wed, 12 Nov 2025 13:48:56 +0800 Subject: [PATCH 48/62] Optimize JSON write with fast/slow path to reduce memory usage - Fast path for clean data (no sanitization) - Slow path sanitizes during encoding - Reload shared memory after sanitization - Custom encoder avoids deep copies - Comprehensive test coverage --- lightrag/kg/json_doc_status_impl.py | 15 +- lightrag/kg/json_kv_impl.py | 15 +- lightrag/utils.py | 99 ++++++++++- tests/test_write_json_optimization.py | 244 ++++++++++++++++++++++++++ 4 files changed, 368 insertions(+), 5 deletions(-) create mode 100644 tests/test_write_json_optimization.py diff --git a/lightrag/kg/json_doc_status_impl.py b/lightrag/kg/json_doc_status_impl.py index 014499f2..3a36f58c 100644 --- a/lightrag/kg/json_doc_status_impl.py +++ b/lightrag/kg/json_doc_status_impl.py @@ -161,7 +161,20 @@ class JsonDocStatusStorage(DocStatusStorage): logger.debug( f"[{self.workspace}] Process {os.getpid()} doc status writting {len(data_dict)} records to {self.namespace}" ) - write_json(data_dict, self._file_name) + + # Write JSON and check if sanitization was applied + needs_reload = write_json(data_dict, self._file_name) + + # If data was sanitized, reload cleaned data to update shared memory + if needs_reload: + logger.info( + f"[{self.workspace}] Reloading sanitized data into shared memory for {self.namespace}" + ) + cleaned_data = load_json(self._file_name) + if cleaned_data: + self._data.clear() + self._data.update(cleaned_data) + await clear_all_update_flags(self.final_namespace) async def upsert(self, data: dict[str, dict[str, Any]]) -> None: diff --git a/lightrag/kg/json_kv_impl.py b/lightrag/kg/json_kv_impl.py index fd016b14..b3d9a34f 100644 --- a/lightrag/kg/json_kv_impl.py +++ b/lightrag/kg/json_kv_impl.py @@ -81,7 +81,20 @@ class JsonKVStorage(BaseKVStorage): logger.debug( f"[{self.workspace}] Process {os.getpid()} KV writting {data_count} records to {self.namespace}" ) - write_json(data_dict, self._file_name) + + # Write JSON and check if sanitization was applied + needs_reload = write_json(data_dict, self._file_name) + + # If data was sanitized, reload cleaned data to update shared memory + if needs_reload: + logger.info( + f"[{self.workspace}] Reloading sanitized data into shared memory for {self.namespace}" + ) + cleaned_data = load_json(self._file_name) + if cleaned_data: + self._data.clear() + self._data.update(cleaned_data) + await clear_all_update_flags(self.final_namespace) async def get_by_id(self, id: str) -> dict[str, Any] | None: diff --git a/lightrag/utils.py b/lightrag/utils.py index 4bfd20f2..da27926c 100644 --- a/lightrag/utils.py +++ b/lightrag/utils.py @@ -961,6 +961,10 @@ def _sanitize_string_for_json(text: str) -> str: def _sanitize_json_data(data: Any) -> Any: """Recursively sanitize all string values in data structure for safe UTF-8 encoding + DEPRECATED: This function creates a deep copy of the data which can be memory-intensive. + For new code, prefer using write_json with SanitizingJSONEncoder which sanitizes during + serialization without creating copies. + Handles all JSON-serializable types including: - Dictionary keys and values - Lists and tuples (preserves type) @@ -992,11 +996,100 @@ def _sanitize_json_data(data: Any) -> Any: return data +class SanitizingJSONEncoder(json.JSONEncoder): + """ + Custom JSON encoder that sanitizes data during serialization. + + This encoder cleans strings during the encoding process without creating + a full copy of the data structure, making it memory-efficient for large datasets. + """ + + def encode(self, o): + """Override encode method to handle simple string cases""" + if isinstance(o, str): + return json.encoder.encode_basestring(_sanitize_string_for_json(o)) + return super().encode(o) + + def iterencode(self, o, _one_shot=False): + """ + Override iterencode to sanitize strings during serialization. + This is the core method that handles complex nested structures. + """ + # Preprocess: sanitize all strings in the object + sanitized = self._sanitize_for_encoding(o) + + # Call parent's iterencode with sanitized data + for chunk in super().iterencode(sanitized, _one_shot): + yield chunk + + def _sanitize_for_encoding(self, obj): + """ + Recursively sanitize strings in an object. + Creates new objects only when necessary to avoid deep copies. + + Args: + obj: Object to sanitize + + Returns: + Sanitized object with cleaned strings + """ + if isinstance(obj, str): + return _sanitize_string_for_json(obj) + + elif isinstance(obj, dict): + # Create new dict with sanitized keys and values + new_dict = {} + for k, v in obj.items(): + clean_k = _sanitize_string_for_json(k) if isinstance(k, str) else k + clean_v = self._sanitize_for_encoding(v) + new_dict[clean_k] = clean_v + return new_dict + + elif isinstance(obj, (list, tuple)): + # Sanitize list/tuple elements + cleaned = [self._sanitize_for_encoding(item) for item in obj] + return type(obj)(cleaned) if isinstance(obj, tuple) else cleaned + + else: + # Numbers, booleans, None, etc. remain unchanged + return obj + + def write_json(json_obj, file_name): - # Sanitize data before writing to prevent UTF-8 encoding errors - sanitized_obj = _sanitize_json_data(json_obj) + """ + Write JSON data to file with optimized sanitization strategy. + + This function uses a two-stage approach: + 1. Fast path: Try direct serialization (works for clean data ~99% of time) + 2. Slow path: Use custom encoder that sanitizes during serialization + + The custom encoder approach avoids creating a deep copy of the data, + making it memory-efficient. When sanitization occurs, the caller should + reload the cleaned data from the file to update shared memory. + + Args: + json_obj: Object to serialize (may be a shallow copy from shared memory) + file_name: Output file path + + Returns: + bool: True if sanitization was applied (caller should reload data), + False if direct write succeeded (no reload needed) + """ + try: + # Strategy 1: Fast path - try direct serialization + with open(file_name, "w", encoding="utf-8") as f: + json.dump(json_obj, f, indent=2, ensure_ascii=False) + return False # No sanitization needed, no reload required + + except (UnicodeEncodeError, UnicodeDecodeError) as e: + logger.debug(f"Direct JSON write failed, using sanitizing encoder: {e}") + + # Strategy 2: Use custom encoder (sanitizes during serialization, zero memory copy) with open(file_name, "w", encoding="utf-8") as f: - json.dump(sanitized_obj, f, indent=2, ensure_ascii=False) + json.dump(json_obj, f, indent=2, ensure_ascii=False, cls=SanitizingJSONEncoder) + + logger.info(f"JSON sanitization applied during write: {file_name}") + return True # Sanitization applied, reload recommended class TokenizerInterface(Protocol): diff --git a/tests/test_write_json_optimization.py b/tests/test_write_json_optimization.py new file mode 100644 index 00000000..ea555c50 --- /dev/null +++ b/tests/test_write_json_optimization.py @@ -0,0 +1,244 @@ +""" +Test suite for write_json optimization + +This test verifies: +1. Fast path works for clean data (no sanitization) +2. Slow path applies sanitization for dirty data +3. Sanitization is done during encoding (memory-efficient) +4. Reloading updates shared memory with cleaned data +""" + +import os +import json +import tempfile +from lightrag.utils import write_json, load_json, SanitizingJSONEncoder + + +class TestWriteJsonOptimization: + """Test write_json optimization with two-stage approach""" + + def test_fast_path_clean_data(self): + """Test that clean data takes the fast path without sanitization""" + clean_data = { + "name": "John Doe", + "age": 30, + "items": ["apple", "banana", "cherry"], + "nested": {"key": "value", "number": 42}, + } + + with tempfile.NamedTemporaryFile(mode="w", delete=False, suffix=".json") as f: + temp_file = f.name + + try: + # Write clean data - should return False (no sanitization) + needs_reload = write_json(clean_data, temp_file) + assert not needs_reload, "Clean data should not require sanitization" + + # Verify data was written correctly + loaded_data = load_json(temp_file) + assert loaded_data == clean_data, "Loaded data should match original" + finally: + os.unlink(temp_file) + + def test_slow_path_dirty_data(self): + """Test that dirty data triggers sanitization""" + # Create data with surrogate characters (U+D800 to U+DFFF) + dirty_string = "Hello\ud800World" # Contains surrogate character + dirty_data = {"text": dirty_string, "number": 123} + + with tempfile.NamedTemporaryFile(mode="w", delete=False, suffix=".json") as f: + temp_file = f.name + + try: + # Write dirty data - should return True (sanitization applied) + needs_reload = write_json(dirty_data, temp_file) + assert needs_reload, "Dirty data should trigger sanitization" + + # Verify data was written and sanitized + loaded_data = load_json(temp_file) + assert loaded_data is not None, "Data should be written" + assert loaded_data["number"] == 123, "Clean fields should remain unchanged" + # Surrogate character should be removed + assert ( + "\ud800" not in loaded_data["text"] + ), "Surrogate character should be removed" + finally: + os.unlink(temp_file) + + def test_sanitizing_encoder_removes_surrogates(self): + """Test that SanitizingJSONEncoder removes surrogate characters""" + data_with_surrogates = { + "text": "Hello\ud800\udc00World", # Contains surrogate pair + "clean": "Clean text", + "nested": {"dirty_key\ud801": "value", "clean_key": "clean\ud802value"}, + } + + # Encode using custom encoder + encoded = json.dumps( + data_with_surrogates, cls=SanitizingJSONEncoder, ensure_ascii=False + ) + + # Verify no surrogate characters in output + assert "\ud800" not in encoded, "Surrogate U+D800 should be removed" + assert "\udc00" not in encoded, "Surrogate U+DC00 should be removed" + assert "\ud801" not in encoded, "Surrogate U+D801 should be removed" + assert "\ud802" not in encoded, "Surrogate U+D802 should be removed" + + # Verify clean parts remain + assert "Clean text" in encoded, "Clean text should remain" + assert "clean_key" in encoded, "Clean keys should remain" + + def test_nested_structure_sanitization(self): + """Test sanitization of deeply nested structures""" + nested_data = { + "level1": { + "level2": { + "level3": {"dirty": "text\ud800here", "clean": "normal text"}, + "list": ["item1", "item\ud801dirty", "item3"], + } + } + } + + with tempfile.NamedTemporaryFile(mode="w", delete=False, suffix=".json") as f: + temp_file = f.name + + try: + needs_reload = write_json(nested_data, temp_file) + assert needs_reload, "Nested dirty data should trigger sanitization" + + # Verify nested structure is preserved + loaded_data = load_json(temp_file) + assert "level1" in loaded_data + assert "level2" in loaded_data["level1"] + assert "level3" in loaded_data["level1"]["level2"] + + # Verify surrogates are removed + dirty_text = loaded_data["level1"]["level2"]["level3"]["dirty"] + assert "\ud800" not in dirty_text, "Nested surrogate should be removed" + + # Verify list items are sanitized + list_items = loaded_data["level1"]["level2"]["list"] + assert ( + "\ud801" not in list_items[1] + ), "List item surrogates should be removed" + finally: + os.unlink(temp_file) + + def test_unicode_non_characters_removed(self): + """Test that Unicode non-characters (U+FFFE, U+FFFF) don't cause encoding errors + + Note: U+FFFE and U+FFFF are valid UTF-8 characters (though discouraged), + so they don't trigger sanitization. They only get removed when explicitly + using the SanitizingJSONEncoder. + """ + data_with_nonchars = {"text1": "Hello\ufffeWorld", "text2": "Test\uffffString"} + + with tempfile.NamedTemporaryFile(mode="w", delete=False, suffix=".json") as f: + temp_file = f.name + + try: + # These characters are valid UTF-8, so they take the fast path + needs_reload = write_json(data_with_nonchars, temp_file) + assert not needs_reload, "U+FFFE/U+FFFF are valid UTF-8 characters" + + loaded_data = load_json(temp_file) + # They're written as-is in the fast path + assert loaded_data == data_with_nonchars + finally: + os.unlink(temp_file) + + def test_mixed_clean_dirty_data(self): + """Test data with both clean and dirty fields""" + mixed_data = { + "clean_field": "This is perfectly fine", + "dirty_field": "This has\ud800issues", + "number": 42, + "boolean": True, + "null_value": None, + "clean_list": [1, 2, 3], + "dirty_list": ["clean", "dirty\ud801item"], + } + + with tempfile.NamedTemporaryFile(mode="w", delete=False, suffix=".json") as f: + temp_file = f.name + + try: + needs_reload = write_json(mixed_data, temp_file) + assert ( + needs_reload + ), "Mixed data with dirty fields should trigger sanitization" + + loaded_data = load_json(temp_file) + + # Clean fields should remain unchanged + assert loaded_data["clean_field"] == "This is perfectly fine" + assert loaded_data["number"] == 42 + assert loaded_data["boolean"] + assert loaded_data["null_value"] is None + assert loaded_data["clean_list"] == [1, 2, 3] + + # Dirty fields should be sanitized + assert "\ud800" not in loaded_data["dirty_field"] + assert "\ud801" not in loaded_data["dirty_list"][1] + finally: + os.unlink(temp_file) + + def test_empty_and_none_strings(self): + """Test handling of empty and None values""" + data = { + "empty": "", + "none": None, + "zero": 0, + "false": False, + "empty_list": [], + "empty_dict": {}, + } + + with tempfile.NamedTemporaryFile(mode="w", delete=False, suffix=".json") as f: + temp_file = f.name + + try: + needs_reload = write_json(data, temp_file) + assert ( + not needs_reload + ), "Clean empty values should not trigger sanitization" + + loaded_data = load_json(temp_file) + assert loaded_data == data, "Empty/None values should be preserved" + finally: + os.unlink(temp_file) + + +if __name__ == "__main__": + # Run tests + test = TestWriteJsonOptimization() + + print("Running test_fast_path_clean_data...") + test.test_fast_path_clean_data() + print("✓ Passed") + + print("Running test_slow_path_dirty_data...") + test.test_slow_path_dirty_data() + print("✓ Passed") + + print("Running test_sanitizing_encoder_removes_surrogates...") + test.test_sanitizing_encoder_removes_surrogates() + print("✓ Passed") + + print("Running test_nested_structure_sanitization...") + test.test_nested_structure_sanitization() + print("✓ Passed") + + print("Running test_unicode_non_characters_removed...") + test.test_unicode_non_characters_removed() + print("✓ Passed") + + print("Running test_mixed_clean_dirty_data...") + test.test_mixed_clean_dirty_data() + print("✓ Passed") + + print("Running test_empty_and_none_strings...") + test.test_empty_and_none_strings() + print("✓ Passed") + + print("\n✅ All tests passed!") From 6de4123f74e4309e7a0689b4aa8d140b361858f5 Mon Sep 17 00:00:00 2001 From: yangdx Date: Wed, 12 Nov 2025 15:42:07 +0800 Subject: [PATCH 49/62] Optimize JSON string sanitization with precompiled regex and zero-copy - Precompile regex pattern at module level - Zero-copy path for clean strings - Use C-level regex for performance - Remove deprecated _sanitize_json_data - Fast detection for common case --- lightrag/utils.py | 65 ++++++++--------------------------------------- 1 file changed, 11 insertions(+), 54 deletions(-) diff --git a/lightrag/utils.py b/lightrag/utils.py index da27926c..b78b7523 100644 --- a/lightrag/utils.py +++ b/lightrag/utils.py @@ -56,6 +56,9 @@ if not logger.handlers: # Set httpx logging level to WARNING logging.getLogger("httpx").setLevel(logging.WARNING) +# Precompile regex pattern for JSON sanitization (module-level, compiled once) +_SURROGATE_PATTERN = re.compile(r"[\uD800-\uDFFF\uFFFE\uFFFF]") + # Global import for pypinyin with startup-time logging try: import pypinyin @@ -930,70 +933,24 @@ def load_json(file_name): def _sanitize_string_for_json(text: str) -> str: """Remove characters that cannot be encoded in UTF-8 for JSON serialization. - This is a simpler sanitizer specifically for JSON that directly removes - problematic characters without attempting to encode first. + Uses regex for optimal performance with zero-copy optimization for clean strings. + Fast detection path for clean strings (99% of cases) with efficient removal for dirty strings. Args: text: String to sanitize Returns: - Sanitized string safe for UTF-8 encoding in JSON + Original string if clean (zero-copy), sanitized string if dirty """ if not text: return text - # Directly filter out problematic characters without pre-validation - sanitized = "" - for char in text: - code_point = ord(char) - # Skip surrogate characters (U+D800 to U+DFFF) - main cause of encoding errors - if 0xD800 <= code_point <= 0xDFFF: - continue - # Skip other non-characters in Unicode - elif code_point == 0xFFFE or code_point == 0xFFFF: - continue - else: - sanitized += char + # Fast path: Check if sanitization is needed using C-level regex search + if not _SURROGATE_PATTERN.search(text): + return text # Zero-copy for clean strings - most common case - return sanitized - - -def _sanitize_json_data(data: Any) -> Any: - """Recursively sanitize all string values in data structure for safe UTF-8 encoding - - DEPRECATED: This function creates a deep copy of the data which can be memory-intensive. - For new code, prefer using write_json with SanitizingJSONEncoder which sanitizes during - serialization without creating copies. - - Handles all JSON-serializable types including: - - Dictionary keys and values - - Lists and tuples (preserves type) - - Nested structures - - Strings at any level - - Args: - data: Data to sanitize (dict, list, tuple, str, or other types) - - Returns: - Sanitized data with all strings cleaned of problematic characters - """ - if isinstance(data, dict): - # Sanitize both keys and values - return { - _sanitize_string_for_json(k) - if isinstance(k, str) - else k: _sanitize_json_data(v) - for k, v in data.items() - } - elif isinstance(data, (list, tuple)): - # Handle both lists and tuples, preserve original type - sanitized = [_sanitize_json_data(item) for item in data] - return type(data)(sanitized) - elif isinstance(data, str): - return _sanitize_string_for_json(data) - else: - # Numbers, booleans, None, etc. - return as-is - return data + # Slow path: Remove problematic characters using C-level regex substitution + return _SURROGATE_PATTERN.sub("", text) class SanitizingJSONEncoder(json.JSONEncoder): From dcf1d286813217168953346ed1e77e70165f9195 Mon Sep 17 00:00:00 2001 From: yangdx Date: Wed, 12 Nov 2025 16:16:28 +0800 Subject: [PATCH 50/62] Fix migration to reload sanitized data and prevent memory corruption MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Reload cleaned data after sanitization • Update shared memory with clean data • Add specific surrogate char tests • Test migration sanitization flow • Prevent dirty data in memory --- lightrag/kg/json_kv_impl.py | 15 ++++- tests/test_write_json_optimization.py | 90 +++++++++++++++++++++++++++ 2 files changed, 102 insertions(+), 3 deletions(-) diff --git a/lightrag/kg/json_kv_impl.py b/lightrag/kg/json_kv_impl.py index b3d9a34f..3f99dd4d 100644 --- a/lightrag/kg/json_kv_impl.py +++ b/lightrag/kg/json_kv_impl.py @@ -237,7 +237,7 @@ class JsonKVStorage(BaseKVStorage): data: Original data dictionary that may contain legacy structure Returns: - Migrated data dictionary with flattened cache keys + Migrated data dictionary with flattened cache keys (sanitized if needed) """ from lightrag.utils import generate_cache_key @@ -274,8 +274,17 @@ class JsonKVStorage(BaseKVStorage): logger.info( f"[{self.workspace}] Migrated {migration_count} legacy cache entries to flattened structure" ) - # Persist migrated data immediately - write_json(migrated_data, self._file_name) + # Persist migrated data immediately and check if sanitization was applied + needs_reload = write_json(migrated_data, self._file_name) + + # If data was sanitized during write, reload cleaned data + if needs_reload: + logger.info( + f"[{self.workspace}] Reloading sanitized migration data for {self.namespace}" + ) + cleaned_data = load_json(self._file_name) + if cleaned_data: + return cleaned_data # Return cleaned data to update shared memory return migrated_data diff --git a/tests/test_write_json_optimization.py b/tests/test_write_json_optimization.py index ea555c50..9c4105b9 100644 --- a/tests/test_write_json_optimization.py +++ b/tests/test_write_json_optimization.py @@ -208,6 +208,88 @@ class TestWriteJsonOptimization: finally: os.unlink(temp_file) + def test_specific_surrogate_udc9a(self): + """Test specific surrogate character \\udc9a mentioned in the issue""" + # Test the exact surrogate character from the error message: + # UnicodeEncodeError: 'utf-8' codec can't encode character '\\udc9a' + data_with_udc9a = { + "text": "Some text with surrogate\udc9acharacter", + "position": 201, # As mentioned in the error + "clean_field": "Normal text", + } + + with tempfile.NamedTemporaryFile(mode="w", delete=False, suffix=".json") as f: + temp_file = f.name + + try: + # Write data - should trigger sanitization + needs_reload = write_json(data_with_udc9a, temp_file) + assert needs_reload, "Data with \\udc9a should trigger sanitization" + + # Verify surrogate was removed + loaded_data = load_json(temp_file) + assert loaded_data is not None + assert "\udc9a" not in loaded_data["text"], "\\udc9a should be removed" + assert ( + loaded_data["clean_field"] == "Normal text" + ), "Clean fields should remain" + finally: + os.unlink(temp_file) + + def test_migration_with_surrogate_sanitization(self): + """Test that migration process handles surrogate characters correctly + + This test simulates the scenario where legacy cache contains surrogate + characters and ensures they are cleaned during migration. + """ + # Simulate legacy cache data with surrogate characters + legacy_data_with_surrogates = { + "cache_entry_1": { + "return": "Result with\ud800surrogate", + "cache_type": "extract", + "original_prompt": "Some\udc9aprompt", + }, + "cache_entry_2": { + "return": "Clean result", + "cache_type": "query", + "original_prompt": "Clean prompt", + }, + } + + with tempfile.NamedTemporaryFile(mode="w", delete=False, suffix=".json") as f: + temp_file = f.name + + try: + # First write the dirty data directly (simulating legacy cache file) + # Use custom encoder to force write even with surrogates + with open(temp_file, "w", encoding="utf-8") as f: + json.dump( + legacy_data_with_surrogates, + f, + cls=SanitizingJSONEncoder, + ensure_ascii=False, + ) + + # Load and verify surrogates were cleaned during initial write + loaded_data = load_json(temp_file) + assert loaded_data is not None + + # The data should be sanitized + assert ( + "\ud800" not in loaded_data["cache_entry_1"]["return"] + ), "Surrogate in return should be removed" + assert ( + "\udc9a" not in loaded_data["cache_entry_1"]["original_prompt"] + ), "Surrogate in prompt should be removed" + + # Clean data should remain unchanged + assert ( + loaded_data["cache_entry_2"]["return"] == "Clean result" + ), "Clean data should remain" + + finally: + os.unlink(temp_file) + if __name__ == "__main__": # Run tests @@ -241,4 +323,12 @@ if __name__ == "__main__": test.test_empty_and_none_strings() print("✓ Passed") + print("Running test_specific_surrogate_udc9a...") + test.test_specific_surrogate_udc9a() + print("✓ Passed") + + print("Running test_migration_with_surrogate_sanitization...") + test.test_migration_with_surrogate_sanitization() + print("✓ Passed") + print("\n✅ All tests passed!") From 70cc2419f2e8707aaf4b2c273d650373d6e3f6a0 Mon Sep 17 00:00:00 2001 From: yangdx Date: Wed, 12 Nov 2025 16:40:57 +0800 Subject: [PATCH 51/62] Fix empty dict handling after JSON sanitization MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Replace truthy checks with `is not None` • Handle empty dict edge case properly • Prevent data reload failures • Add comprehensive test coverage • Fix JsonKVStorage and DocStatusStorage --- lightrag/kg/json_doc_status_impl.py | 2 +- lightrag/kg/json_kv_impl.py | 4 +- tests/test_write_json_optimization.py | 53 +++++++++++++++++++++++++++ 3 files changed, 56 insertions(+), 3 deletions(-) diff --git a/lightrag/kg/json_doc_status_impl.py b/lightrag/kg/json_doc_status_impl.py index 3a36f58c..bf6e7b17 100644 --- a/lightrag/kg/json_doc_status_impl.py +++ b/lightrag/kg/json_doc_status_impl.py @@ -171,7 +171,7 @@ class JsonDocStatusStorage(DocStatusStorage): f"[{self.workspace}] Reloading sanitized data into shared memory for {self.namespace}" ) cleaned_data = load_json(self._file_name) - if cleaned_data: + if cleaned_data is not None: self._data.clear() self._data.update(cleaned_data) diff --git a/lightrag/kg/json_kv_impl.py b/lightrag/kg/json_kv_impl.py index 3f99dd4d..f9adb20f 100644 --- a/lightrag/kg/json_kv_impl.py +++ b/lightrag/kg/json_kv_impl.py @@ -91,7 +91,7 @@ class JsonKVStorage(BaseKVStorage): f"[{self.workspace}] Reloading sanitized data into shared memory for {self.namespace}" ) cleaned_data = load_json(self._file_name) - if cleaned_data: + if cleaned_data is not None: self._data.clear() self._data.update(cleaned_data) @@ -283,7 +283,7 @@ class JsonKVStorage(BaseKVStorage): f"[{self.workspace}] Reloading sanitized migration data for {self.namespace}" ) cleaned_data = load_json(self._file_name) - if cleaned_data: + if cleaned_data is not None: return cleaned_data # Return cleaned data to update shared memory return migrated_data diff --git a/tests/test_write_json_optimization.py b/tests/test_write_json_optimization.py index 9c4105b9..0a92904f 100644 --- a/tests/test_write_json_optimization.py +++ b/tests/test_write_json_optimization.py @@ -290,6 +290,55 @@ class TestWriteJsonOptimization: finally: os.unlink(temp_file) + def test_empty_values_after_sanitization(self): + """Test that data with empty values after sanitization is properly handled + + Critical edge case: When sanitization results in data with empty string values, + we must use 'if cleaned_data is not None' instead of 'if cleaned_data' to ensure + proper reload, since truthy check on dict depends on content, not just existence. + """ + # Create data where ALL values are only surrogate characters + all_dirty_data = { + "key1": "\ud800\udc00\ud801", + "key2": "\ud802\ud803", + } + + with tempfile.NamedTemporaryFile(mode="w", delete=False, suffix=".json") as f: + temp_file = f.name + + try: + # Write dirty data - should trigger sanitization + needs_reload = write_json(all_dirty_data, temp_file) + assert needs_reload, "All-dirty data should trigger sanitization" + + # Load the sanitized data + cleaned_data = load_json(temp_file) + + # Critical assertions for the edge case + assert cleaned_data is not None, "Cleaned data should not be None" + # Sanitization removes surrogates but preserves keys with empty values + assert cleaned_data == { + "key1": "", + "key2": "", + }, "Surrogates should be removed, keys preserved" + # This dict is truthy because it has keys (even with empty values) + assert cleaned_data, "Dict with keys is truthy" + + # Test the actual edge case: empty dict + empty_data = {} + needs_reload2 = write_json(empty_data, temp_file) + assert not needs_reload2, "Empty dict is clean" + + reloaded_empty = load_json(temp_file) + assert reloaded_empty is not None, "Empty dict should not be None" + assert reloaded_empty == {}, "Empty dict should remain empty" + assert ( + not reloaded_empty + ), "Empty dict evaluates to False (the critical check)" + + finally: + os.unlink(temp_file) + if __name__ == "__main__": # Run tests @@ -331,4 +380,8 @@ if __name__ == "__main__": test.test_migration_with_surrogate_sanitization() print("✓ Passed") + print("Running test_empty_values_after_sanitization...") + test.test_empty_values_after_sanitization() + print("✓ Passed") + print("\n✅ All tests passed!") From f7432a260e0fd543dccbfb9606a8db7d316fed50 Mon Sep 17 00:00:00 2001 From: Louis Lacombe Date: Wed, 12 Nov 2025 16:11:05 +0000 Subject: [PATCH 52/62] Add support for environment variable fallback for API key and default host for cloud models --- lightrag/llm/ollama.py | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/lightrag/llm/ollama.py b/lightrag/llm/ollama.py index b013496e..28d91075 100644 --- a/lightrag/llm/ollama.py +++ b/lightrag/llm/ollama.py @@ -1,4 +1,5 @@ from collections.abc import AsyncIterator +import os import pipmaster as pm @@ -53,6 +54,9 @@ async def _ollama_model_if_cache( timeout = None kwargs.pop("hashing_kv", None) api_key = kwargs.pop("api_key", None) + # fallback to environment variable when not provided explicitly + if not api_key: + api_key = os.getenv("OLLAMA_API_KEY") headers = { "Content-Type": "application/json", "User-Agent": f"LightRAG/{__api_version__}", @@ -60,6 +64,16 @@ async def _ollama_model_if_cache( if api_key: headers["Authorization"] = f"Bearer {api_key}" + # If this is a cloud model (names include '-cloud' or ':cloud'), default + # the host to Ollama cloud when no explicit host was provided. + try: + model_name_str = str(model) if model is not None else "" + except Exception: + model_name_str = "" + + if host is None and ("-cloud" in model_name_str or ":cloud" in model_name_str): + host = "https://ollama.com" + ollama_client = ollama.AsyncClient(host=host, timeout=timeout, headers=headers) try: @@ -144,6 +158,8 @@ async def ollama_model_complete( async def ollama_embed(texts: list[str], embed_model, **kwargs) -> np.ndarray: api_key = kwargs.pop("api_key", None) + if not api_key: + api_key = os.getenv("OLLAMA_API_KEY") headers = { "Content-Type": "application/json", "User-Agent": f"LightRAG/{__api_version__}", @@ -154,6 +170,15 @@ async def ollama_embed(texts: list[str], embed_model, **kwargs) -> np.ndarray: host = kwargs.pop("host", None) timeout = kwargs.pop("timeout", None) + # If embed_model targets Ollama cloud, default host when not provided + try: + embed_model_name = str(embed_model) if embed_model is not None else "" + except Exception: + embed_model_name = "" + + if host is None and ("-cloud" in embed_model_name or ":cloud" in embed_model_name): + host = "https://ollama.com" + ollama_client = ollama.AsyncClient(host=host, timeout=timeout, headers=headers) try: options = kwargs.pop("options", {}) From 343d30727ae6951881b819bbf055cbb9d6f93866 Mon Sep 17 00:00:00 2001 From: yangdx Date: Thu, 13 Nov 2025 11:40:56 +0800 Subject: [PATCH 53/62] Update env.example --- env.example | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/env.example b/env.example index 4590ceee..a95ff9bf 100644 --- a/env.example +++ b/env.example @@ -29,7 +29,7 @@ WEBUI_DESCRIPTION="Simple and Fast Graph Based RAG System" # OLLAMA_EMULATING_MODEL_NAME=lightrag OLLAMA_EMULATING_MODEL_TAG=latest -### Max nodes return from graph retrieval in webui +### Max nodes for graph retrieval (Ensure WebUI local settings are also updated, which is limited to this value) # MAX_GRAPH_NODES=1000 ### Logging level From 940bec0b31e6743d269ca02167c82d0b28854893 Mon Sep 17 00:00:00 2001 From: yangdx Date: Thu, 13 Nov 2025 12:37:15 +0800 Subject: [PATCH 54/62] Support async chunking functions in LightRAG processing pipeline - Add Awaitable and Union type imports - Update chunking_func type annotation - Handle coroutine results with await - Add return type validation - Update docstring for async support --- lightrag/lightrag.py | 31 +++++++++++++++++++++++-------- 1 file changed, 23 insertions(+), 8 deletions(-) diff --git a/lightrag/lightrag.py b/lightrag/lightrag.py index af953fdf..8bec154f 100644 --- a/lightrag/lightrag.py +++ b/lightrag/lightrag.py @@ -12,6 +12,7 @@ from functools import partial from typing import ( Any, AsyncIterator, + Awaitable, Callable, Iterator, cast, @@ -20,6 +21,7 @@ from typing import ( Optional, List, Dict, + Union, ) from lightrag.prompt import PROMPTS from lightrag.exceptions import PipelineCancelledException @@ -243,11 +245,13 @@ class LightRAG: int, int, ], - List[Dict[str, Any]], + Union[List[Dict[str, Any]], Awaitable[List[Dict[str, Any]]]], ] = field(default_factory=lambda: chunking_by_token_size) """ Custom chunking function for splitting text into chunks before processing. + The function can be either synchronous or asynchronous. + The function should take the following parameters: - `tokenizer`: A Tokenizer instance to use for tokenization. @@ -257,7 +261,8 @@ class LightRAG: - `chunk_token_size`: The maximum number of tokens per chunk. - `chunk_overlap_token_size`: The number of overlapping tokens between consecutive chunks. - The function should return a list of dictionaries, where each dictionary contains the following keys: + The function should return a list of dictionaries (or an awaitable that resolves to a list), + where each dictionary contains the following keys: - `tokens`: The number of tokens in the chunk. - `content`: The text content of the chunk. @@ -1756,8 +1761,8 @@ class LightRAG: ) content = content_data["content"] - # Generate chunks from document - chunks = self.chunking_func( + # Call chunking function, supporting both sync and async implementations + chunking_result = self.chunking_func( self.tokenizer, content, split_by_character, @@ -1765,9 +1770,19 @@ class LightRAG: self.chunk_overlap_token_size, self.chunk_token_size, ) - # 判断chunks是否是异步异步函数的返回 - if asyncio.iscoroutine(chunks): - chunks = await chunks + + # If result is a coroutine, await to get actual result + if asyncio.iscoroutine(chunking_result): + chunking_result = await chunking_result + + # Validate return type + if not isinstance(chunking_result, (list, tuple)): + raise TypeError( + f"chunking_func must return a list or tuple of dicts, " + f"got {type(chunking_result)}" + ) + + # Build chunks dictionary chunks: dict[str, Any] = { compute_mdhash_id(dp["content"], prefix="chunk-"): { **dp, @@ -1775,7 +1790,7 @@ class LightRAG: "file_path": file_path, # Add file path to each chunk "llm_cache_list": [], # Initialize empty LLM cache list for each chunk } - for dp in chunks + for dp in chunking_result } if not chunks: From c230d1a28d1ffb8de43010d49e945c1dabaee257 Mon Sep 17 00:00:00 2001 From: yangdx Date: Thu, 13 Nov 2025 12:56:01 +0800 Subject: [PATCH 55/62] Replace asyncio.iscoroutine with inspect.isawaitable for better detection --- lightrag/lightrag.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/lightrag/lightrag.py b/lightrag/lightrag.py index 8bec154f..e540e3b7 100644 --- a/lightrag/lightrag.py +++ b/lightrag/lightrag.py @@ -3,6 +3,7 @@ from __future__ import annotations import traceback import asyncio import configparser +import inspect import os import time import warnings @@ -1771,8 +1772,8 @@ class LightRAG: self.chunk_token_size, ) - # If result is a coroutine, await to get actual result - if asyncio.iscoroutine(chunking_result): + # If result is awaitable, await to get actual result + if inspect.isawaitable(chunking_result): chunking_result = await chunking_result # Validate return type From 4b31942e2a970f77f2ac0d2053c3ab969d4f7372 Mon Sep 17 00:00:00 2001 From: yangdx Date: Thu, 13 Nov 2025 13:34:09 +0800 Subject: [PATCH 56/62] refactor: move document deps to api group, remove dynamic imports - Merge offline-docs into api extras - Remove pipmaster dynamic installs - Add async document processing - Pre-check docling availability - Update offline deployment docs --- docs/OfflineDeployment.md | 34 +-- lightrag/api/routers/document_routes.py | 323 +++++++++++++----------- pyproject.toml | 24 +- requirements-offline-docs.txt | 15 -- 4 files changed, 205 insertions(+), 191 deletions(-) delete mode 100644 requirements-offline-docs.txt diff --git a/docs/OfflineDeployment.md b/docs/OfflineDeployment.md index 5307da6f..e186dda0 100644 --- a/docs/OfflineDeployment.md +++ b/docs/OfflineDeployment.md @@ -23,10 +23,11 @@ LightRAG uses dynamic package installation (`pipmaster`) for optional features b LightRAG dynamically installs packages for: -- **Document Processing**: `docling`, `pypdf2`, `python-docx`, `python-pptx`, `openpyxl` - **Storage Backends**: `redis`, `neo4j`, `pymilvus`, `pymongo`, `asyncpg`, `qdrant-client` - **LLM Providers**: `openai`, `anthropic`, `ollama`, `zhipuai`, `aioboto3`, `voyageai`, `llama-index`, `lmdeploy`, `transformers`, `torch` -- Tiktoken Models**: BPE encoding models downloaded from OpenAI CDN +- **Tiktoken Models**: BPE encoding models downloaded from OpenAI CDN + +**Note**: Document processing dependencies (`pypdf`, `python-docx`, `python-pptx`, `openpyxl`) are now pre-installed with the `api` extras group and no longer require dynamic installation. ## Quick Start @@ -75,32 +76,31 @@ LightRAG provides flexible dependency groups for different use cases: | Group | Description | Use Case | |-------|-------------|----------| -| `offline-docs` | Document processing | PDF, DOCX, PPTX, XLSX files | +| `api` | API server + document processing | FastAPI server with PDF, DOCX, PPTX, XLSX support | | `offline-storage` | Storage backends | Redis, Neo4j, MongoDB, PostgreSQL, etc. | | `offline-llm` | LLM providers | OpenAI, Anthropic, Ollama, etc. | -| `offline` | All of the above | Complete offline deployment | +| `offline` | Complete offline package | API + Storage + LLM (all features) | + +**Note**: Document processing (PDF, DOCX, PPTX, XLSX) is included in the `api` extras group. The previous `offline-docs` group has been merged into `api` for better integration. > Software packages requiring `transformers`, `torch`, or `cuda` will not be included in the offline dependency group. ### Installation Examples ```bash -# Install only document processing dependencies -pip install lightrag-hku[offline-docs] +# Install API with document processing +pip install lightrag-hku[api] -# Install document processing and storage backends -pip install lightrag-hku[offline-docs,offline-storage] +# Install API and storage backends +pip install lightrag-hku[api,offline-storage] -# Install all offline dependencies +# Install all offline dependencies (recommended for offline deployment) pip install lightrag-hku[offline] ``` ### Using Individual Requirements Files ```bash -# Document processing only -pip install -r requirements-offline-docs.txt - # Storage backends only pip install -r requirements-offline-storage.txt @@ -244,8 +244,8 @@ ls -la ~/.tiktoken_cache/ **Solution**: ```bash # Pre-install the specific package you need -# For document processing: -pip install lightrag-hku[offline-docs] +# For API with document processing: +pip install lightrag-hku[api] # For storage backends: pip install lightrag-hku[offline-storage] @@ -297,9 +297,9 @@ mkdir -p ~/my_tiktoken_cache 5. **Minimal Installation**: Only install what you need: ```bash - # If you only process PDFs with OpenAI - pip install lightrag-hku[offline-docs] - # Then manually add: pip install openai + # If you only need API with document processing + pip install lightrag-hku[api] + # Then manually add specific LLM: pip install openai ``` ## Additional Resources diff --git a/lightrag/api/routers/document_routes.py b/lightrag/api/routers/document_routes.py index f86bcea8..3f87517d 100644 --- a/lightrag/api/routers/document_routes.py +++ b/lightrag/api/routers/document_routes.py @@ -7,10 +7,10 @@ from lightrag.utils import logger, get_pinyin_sort_key import aiofiles import shutil import traceback -import pipmaster as pm from datetime import datetime, timezone from pathlib import Path from typing import Dict, List, Optional, Any, Literal +from io import BytesIO from fastapi import ( APIRouter, BackgroundTasks, @@ -27,6 +27,20 @@ from lightrag.utils import generate_track_id from lightrag.api.utils_api import get_combined_auth_dependency from ..config import global_args +# Check docling availability at module load time +DOCLING_AVAILABLE = False +try: + import docling # noqa: F401 # type: ignore[import-not-found] + + DOCLING_AVAILABLE = True +except ImportError: + if global_args.document_loading_engine == "DOCLING": + logger.warning( + "DOCLING engine requested but 'docling' package not installed. " + "Falling back to standard document processing. " + "To use DOCLING, install with: pip install lightrag-hku[api,docling]" + ) + # Function to format datetime to ISO format string with timezone information def format_datetime(dt: Any) -> Optional[str]: @@ -879,7 +893,6 @@ def get_unique_filename_in_enqueued(target_dir: Path, original_name: str) -> str Returns: str: Unique filename (may have numeric suffix added) """ - from pathlib import Path import time original_path = Path(original_name) @@ -902,6 +915,122 @@ def get_unique_filename_in_enqueued(target_dir: Path, original_name: str) -> str return f"{base_name}_{timestamp}{extension}" +# Document processing helper functions (synchronous) +# These functions run in thread pool via asyncio.to_thread() to avoid blocking the event loop + + +def _convert_with_docling(file_path: Path) -> str: + """Convert document using docling (synchronous). + + Args: + file_path: Path to the document file + + Returns: + str: Extracted markdown content + """ + from docling.document_converter import DocumentConverter # type: ignore + + converter = DocumentConverter() + result = converter.convert(file_path) + return result.document.export_to_markdown() + + +def _extract_pdf_pypdf(file_bytes: bytes, password: str = None) -> str: + """Extract PDF content using pypdf (synchronous). + + Args: + file_bytes: PDF file content as bytes + password: Optional password for encrypted PDFs + + Returns: + str: Extracted text content + + Raises: + Exception: If PDF is encrypted and password is incorrect or missing + """ + from pypdf import PdfReader # type: ignore + + pdf_file = BytesIO(file_bytes) + reader = PdfReader(pdf_file) + + # Check if PDF is encrypted + if reader.is_encrypted: + if not password: + raise Exception("PDF is encrypted but no password provided") + + decrypt_result = reader.decrypt(password) + if decrypt_result == 0: + raise Exception("Incorrect PDF password") + + # Extract text from all pages + content = "" + for page in reader.pages: + content += page.extract_text() + "\n" + + return content + + +def _extract_docx(file_bytes: bytes) -> str: + """Extract DOCX content (synchronous). + + Args: + file_bytes: DOCX file content as bytes + + Returns: + str: Extracted text content + """ + from docx import Document # type: ignore + + docx_file = BytesIO(file_bytes) + doc = Document(docx_file) + return "\n".join([paragraph.text for paragraph in doc.paragraphs]) + + +def _extract_pptx(file_bytes: bytes) -> str: + """Extract PPTX content (synchronous). + + Args: + file_bytes: PPTX file content as bytes + + Returns: + str: Extracted text content + """ + from pptx import Presentation # type: ignore + + pptx_file = BytesIO(file_bytes) + prs = Presentation(pptx_file) + content = "" + for slide in prs.slides: + for shape in slide.shapes: + if hasattr(shape, "text"): + content += shape.text + "\n" + return content + + +def _extract_xlsx(file_bytes: bytes) -> str: + """Extract XLSX content (synchronous). + + Args: + file_bytes: XLSX file content as bytes + + Returns: + str: Extracted text content + """ + from openpyxl import load_workbook # type: ignore + + xlsx_file = BytesIO(file_bytes) + wb = load_workbook(xlsx_file) + content = "" + for sheet in wb: + content += f"Sheet: {sheet.title}\n" + for row in sheet.iter_rows(values_only=True): + content += ( + "\t".join(str(cell) if cell is not None else "" for cell in row) + "\n" + ) + content += "\n" + return content + + async def pipeline_enqueue_file( rag: LightRAG, file_path: Path, track_id: str = None ) -> tuple[bool, str]: @@ -1072,87 +1201,21 @@ async def pipeline_enqueue_file( case ".pdf": try: - if global_args.document_loading_engine == "DOCLING": - if not pm.is_installed("docling"): # type: ignore - pm.install("docling") - from docling.document_converter import DocumentConverter # type: ignore - - converter = DocumentConverter() - result = converter.convert(file_path) - content = result.document.export_to_markdown() + # Try DOCLING first if configured and available + if ( + global_args.document_loading_engine == "DOCLING" + and DOCLING_AVAILABLE + ): + content = await asyncio.to_thread( + _convert_with_docling, file_path + ) else: - if not pm.is_installed("pypdf"): # type: ignore - pm.install("pypdf") - if not pm.is_installed("pycryptodome"): # type: ignore - pm.install("pycryptodome") - from pypdf import PdfReader # type: ignore - from io import BytesIO - - pdf_file = BytesIO(file) - reader = PdfReader(pdf_file) - - # Check if PDF is encrypted - if reader.is_encrypted: - pdf_password = global_args.pdf_decrypt_password - if not pdf_password: - # PDF is encrypted but no password provided - error_files = [ - { - "file_path": str(file_path.name), - "error_description": "[File Extraction]PDF is encrypted but no password provided", - "original_error": "Please set PDF_DECRYPT_PASSWORD environment variable to decrypt this PDF file", - "file_size": file_size, - } - ] - await rag.apipeline_enqueue_error_documents( - error_files, track_id - ) - logger.error( - f"[File Extraction]PDF is encrypted but no password provided: {file_path.name}" - ) - return False, track_id - - # Try to decrypt with password - try: - decrypt_result = reader.decrypt(pdf_password) - if decrypt_result == 0: - # Password is incorrect - error_files = [ - { - "file_path": str(file_path.name), - "error_description": "[File Extraction]Failed to decrypt PDF - incorrect password", - "original_error": "The provided PDF_DECRYPT_PASSWORD is incorrect for this file", - "file_size": file_size, - } - ] - await rag.apipeline_enqueue_error_documents( - error_files, track_id - ) - logger.error( - f"[File Extraction]Incorrect PDF password: {file_path.name}" - ) - return False, track_id - except Exception as decrypt_error: - # Decryption process error - error_files = [ - { - "file_path": str(file_path.name), - "error_description": "[File Extraction]PDF decryption failed", - "original_error": f"Error during PDF decryption: {str(decrypt_error)}", - "file_size": file_size, - } - ] - await rag.apipeline_enqueue_error_documents( - error_files, track_id - ) - logger.error( - f"[File Extraction]PDF decryption error for {file_path.name}: {str(decrypt_error)}" - ) - return False, track_id - - # Extract text from PDF (encrypted PDFs are now decrypted, unencrypted PDFs proceed directly) - for page in reader.pages: - content += page.extract_text() + "\n" + # Use pypdf (non-blocking via to_thread) + content = await asyncio.to_thread( + _extract_pdf_pypdf, + file, + global_args.pdf_decrypt_password, + ) except Exception as e: error_files = [ { @@ -1172,28 +1235,17 @@ async def pipeline_enqueue_file( case ".docx": try: - if global_args.document_loading_engine == "DOCLING": - if not pm.is_installed("docling"): # type: ignore - pm.install("docling") - from docling.document_converter import DocumentConverter # type: ignore - - converter = DocumentConverter() - result = converter.convert(file_path) - content = result.document.export_to_markdown() - else: - if not pm.is_installed("python-docx"): # type: ignore - try: - pm.install("python-docx") - except Exception: - pm.install("docx") - from docx import Document # type: ignore - from io import BytesIO - - docx_file = BytesIO(file) - doc = Document(docx_file) - content = "\n".join( - [paragraph.text for paragraph in doc.paragraphs] + # Try DOCLING first if configured and available + if ( + global_args.document_loading_engine == "DOCLING" + and DOCLING_AVAILABLE + ): + content = await asyncio.to_thread( + _convert_with_docling, file_path ) + else: + # Use python-docx (non-blocking via to_thread) + content = await asyncio.to_thread(_extract_docx, file) except Exception as e: error_files = [ { @@ -1213,26 +1265,17 @@ async def pipeline_enqueue_file( case ".pptx": try: - if global_args.document_loading_engine == "DOCLING": - if not pm.is_installed("docling"): # type: ignore - pm.install("docling") - from docling.document_converter import DocumentConverter # type: ignore - - converter = DocumentConverter() - result = converter.convert(file_path) - content = result.document.export_to_markdown() + # Try DOCLING first if configured and available + if ( + global_args.document_loading_engine == "DOCLING" + and DOCLING_AVAILABLE + ): + content = await asyncio.to_thread( + _convert_with_docling, file_path + ) else: - if not pm.is_installed("python-pptx"): # type: ignore - pm.install("pptx") - from pptx import Presentation # type: ignore - from io import BytesIO - - pptx_file = BytesIO(file) - prs = Presentation(pptx_file) - for slide in prs.slides: - for shape in slide.shapes: - if hasattr(shape, "text"): - content += shape.text + "\n" + # Use python-pptx (non-blocking via to_thread) + content = await asyncio.to_thread(_extract_pptx, file) except Exception as e: error_files = [ { @@ -1252,33 +1295,17 @@ async def pipeline_enqueue_file( case ".xlsx": try: - if global_args.document_loading_engine == "DOCLING": - if not pm.is_installed("docling"): # type: ignore - pm.install("docling") - from docling.document_converter import DocumentConverter # type: ignore - - converter = DocumentConverter() - result = converter.convert(file_path) - content = result.document.export_to_markdown() + # Try DOCLING first if configured and available + if ( + global_args.document_loading_engine == "DOCLING" + and DOCLING_AVAILABLE + ): + content = await asyncio.to_thread( + _convert_with_docling, file_path + ) else: - if not pm.is_installed("openpyxl"): # type: ignore - pm.install("openpyxl") - from openpyxl import load_workbook # type: ignore - from io import BytesIO - - xlsx_file = BytesIO(file) - wb = load_workbook(xlsx_file) - for sheet in wb: - content += f"Sheet: {sheet.title}\n" - for row in sheet.iter_rows(values_only=True): - content += ( - "\t".join( - str(cell) if cell is not None else "" - for cell in row - ) - + "\n" - ) - content += "\n" + # Use openpyxl (non-blocking via to_thread) + content = await asyncio.to_thread(_extract_xlsx, file) except Exception as e: error_files = [ { diff --git a/pyproject.toml b/pyproject.toml index 81e44aff..53378de0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -79,18 +79,20 @@ api = [ "python-multipart", "pytz", "uvicorn", + # Document processing dependencies (required for API document upload functionality) + "openpyxl>=3.0.0,<4.0.0", # XLSX processing + "pycryptodome>=3.0.0,<4.0.0", # PDF encryption support + "pypdf>=6.1.0", # PDF processing + "python-docx>=0.8.11,<2.0.0", # DOCX processing + "python-pptx>=0.6.21,<2.0.0", # PPTX processing +] + +# Advanced document processing engine (optional) +docling = [ + "docling>=2.0.0,<3.0.0", ] # Offline deployment dependencies (layered design for flexibility) -offline-docs = [ - # Document processing dependencies - "openpyxl>=3.0.0,<4.0.0", - "pycryptodome>=3.0.0,<4.0.0", - "pypdf>=6.1.0", - "python-docx>=0.8.11,<2.0.0", - "python-pptx>=0.6.21,<2.0.0", -] - offline-storage = [ # Storage backend dependencies "redis>=5.0.0,<8.0.0", @@ -115,8 +117,8 @@ offline-llm = [ ] offline = [ - # Complete offline package (includes all offline dependencies) - "lightrag-hku[offline-docs,offline-storage,offline-llm]", + # Complete offline package (includes api for document processing, plus storage and LLM) + "lightrag-hku[api,offline-storage,offline-llm]", ] evaluation = [ diff --git a/requirements-offline-docs.txt b/requirements-offline-docs.txt deleted file mode 100644 index 12f02080..00000000 --- a/requirements-offline-docs.txt +++ /dev/null @@ -1,15 +0,0 @@ -# LightRAG Offline Dependencies - Document Processing -# Install with: pip install -r requirements-offline-docs.txt -# For offline installation: -# pip download -r requirements-offline-docs.txt -d ./packages -# pip install --no-index --find-links=./packages -r requirements-offline-docs.txt -# -# Recommended: Use pip install lightrag-hku[offline-docs] for the same effect -# Or use constraints: pip install --constraint constraints-offline.txt -r requirements-offline-docs.txt - -# Document processing dependencies (with version constraints matching pyproject.toml) -openpyxl>=3.0.0,<4.0.0 -pycryptodome>=3.0.0,<4.0.0 -pypdf>=6.1.0 -python-docx>=0.8.11,<2.0.0 -python-pptx>=0.6.21,<2.0.0 From 746c069ab08653be8bd2e2c5b98b1c78628d2736 Mon Sep 17 00:00:00 2001 From: yangdx Date: Thu, 13 Nov 2025 15:28:05 +0800 Subject: [PATCH 57/62] Implement lazy configuration initialization for API server MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit • Add lazy config initialization • Maintain backward compatibility • Support programmatic usage • Add gunicorn dependency • Explicit config in entry points --- lightrag/api/config.py | 81 ++++++++++++++++++++++++++++++- lightrag/api/lightrag_server.py | 6 +++ lightrag/api/run_with_gunicorn.py | 5 ++ pyproject.toml | 1 + 4 files changed, 92 insertions(+), 1 deletion(-) diff --git a/lightrag/api/config.py b/lightrag/api/config.py index 1f46d147..e41684d0 100644 --- a/lightrag/api/config.py +++ b/lightrag/api/config.py @@ -449,4 +449,83 @@ def update_uvicorn_mode_config(): ) -global_args = parse_args() +# Global configuration with lazy initialization +_global_args = None +_initialized = False + + +def initialize_config(args=None, force=False): + """Initialize global configuration + + This function allows explicit initialization of the configuration, + which is useful for programmatic usage, testing, or embedding LightRAG + in other applications. + + Args: + args: Pre-parsed argparse.Namespace or None to parse from sys.argv + force: Force re-initialization even if already initialized + + Returns: + argparse.Namespace: The configured arguments + + Example: + # Use parsed command line arguments (default) + initialize_config() + + # Use custom configuration programmatically + custom_args = argparse.Namespace( + host='localhost', + port=8080, + working_dir='./custom_rag', + # ... other config + ) + initialize_config(custom_args) + """ + global _global_args, _initialized + + if _initialized and not force: + return _global_args + + _global_args = args if args is not None else parse_args() + _initialized = True + return _global_args + + +def get_config(): + """Get global configuration, auto-initializing if needed + + Returns: + argparse.Namespace: The configured arguments + """ + if not _initialized: + initialize_config() + return _global_args + + +class _GlobalArgsProxy: + """Proxy object that auto-initializes configuration on first access + + This maintains backward compatibility with existing code while + allowing programmatic control over initialization timing. + """ + + def __getattr__(self, name): + if not _initialized: + initialize_config() + return getattr(_global_args, name) + + def __setattr__(self, name, value): + if not _initialized: + initialize_config() + setattr(_global_args, name, value) + + def __repr__(self): + if not _initialized: + return "" + return repr(_global_args) + + +# Create proxy instance for backward compatibility +# Existing code like `from config import global_args` continues to work +# The proxy will auto-initialize on first attribute access +global_args = _GlobalArgsProxy() diff --git a/lightrag/api/lightrag_server.py b/lightrag/api/lightrag_server.py index ded70d67..e5a86b3e 100644 --- a/lightrag/api/lightrag_server.py +++ b/lightrag/api/lightrag_server.py @@ -1214,6 +1214,12 @@ def check_and_install_dependencies(): def main(): + # Explicitly initialize configuration for clarity + # (The proxy will auto-initialize anyway, but this makes intent clear) + from .config import initialize_config + + initialize_config() + # Check if running under Gunicorn if "GUNICORN_CMD_ARGS" in os.environ: # If started with Gunicorn, return directly as Gunicorn will call get_application diff --git a/lightrag/api/run_with_gunicorn.py b/lightrag/api/run_with_gunicorn.py index f2d4d859..999211aa 100644 --- a/lightrag/api/run_with_gunicorn.py +++ b/lightrag/api/run_with_gunicorn.py @@ -34,6 +34,11 @@ def check_and_install_dependencies(): def main(): + # Explicitly initialize configuration for Gunicorn mode + from lightrag.api.config import initialize_config + + initialize_config() + # Set Gunicorn mode flag for lifespan cleanup detection os.environ["LIGHTRAG_GUNICORN_MODE"] = "1" diff --git a/pyproject.toml b/pyproject.toml index 53378de0..1c0ea12b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -79,6 +79,7 @@ api = [ "python-multipart", "pytz", "uvicorn", + "gunicorn", # Document processing dependencies (required for API document upload functionality) "openpyxl>=3.0.0,<4.0.0", # XLSX processing "pycryptodome>=3.0.0,<4.0.0", # PDF encryption support From e6588f91195475ce2b329a08a4e3f599f584064a Mon Sep 17 00:00:00 2001 From: yangdx Date: Thu, 13 Nov 2025 15:31:51 +0800 Subject: [PATCH 58/62] Update uv.lock --- uv.lock | 1940 ++++++++++++++++++++++++++++++++++++++++++++++++++----- 1 file changed, 1784 insertions(+), 156 deletions(-) diff --git a/uv.lock b/uv.lock index 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+ default=False, + help="Enable DOCLING document loading engine (default: from env or DEFAULT)", + ) + # Conditionally add binding options defined in binding_options module # This will add command line arguments for all binding options (e.g., --ollama-embedding-num_ctx) # and corresponding environment variables (e.g., OLLAMA_EMBEDDING_NUM_CTX) @@ -371,8 +379,13 @@ def parse_args() -> argparse.Namespace: ) args.enable_llm_cache = get_env_value("ENABLE_LLM_CACHE", True, bool) - # Select Document loading tool (DOCLING, DEFAULT) - args.document_loading_engine = get_env_value("DOCUMENT_LOADING_ENGINE", "DEFAULT") + # Set document_loading_engine from --docling flag + if args.docling: + args.document_loading_engine = "DOCLING" + else: + args.document_loading_engine = get_env_value( + "DOCUMENT_LOADING_ENGINE", "DEFAULT" + ) # PDF decryption password args.pdf_decrypt_password = get_env_value("PDF_DECRYPT_PASSWORD", None) diff --git a/lightrag/api/routers/document_routes.py b/lightrag/api/routers/document_routes.py index 3f87517d..a59f10c7 100644 --- a/lightrag/api/routers/document_routes.py +++ b/lightrag/api/routers/document_routes.py @@ -3,6 +3,7 @@ This module contains all document-related routes for the LightRAG API. """ import asyncio +from functools import lru_cache from lightrag.utils import logger, get_pinyin_sort_key import aiofiles import shutil @@ -27,19 +28,23 @@ from lightrag.utils import generate_track_id from lightrag.api.utils_api import get_combined_auth_dependency from ..config import global_args -# Check docling availability at module load time -DOCLING_AVAILABLE = False -try: - import docling # noqa: F401 # type: ignore[import-not-found] - DOCLING_AVAILABLE = True -except ImportError: - if global_args.document_loading_engine == "DOCLING": - logger.warning( - "DOCLING engine requested but 'docling' package not installed. " - "Falling back to standard document processing. " - "To use DOCLING, install with: pip install lightrag-hku[api,docling]" - ) +@lru_cache(maxsize=1) +def _is_docling_available() -> bool: + """Check if docling is available (cached check). + + This function uses lru_cache to avoid repeated import attempts. + The result is cached after the first call. + + Returns: + bool: True if docling is available, False otherwise + """ + try: + import docling # noqa: F401 # type: ignore[import-not-found] + + return True + except ImportError: + return False # Function to format datetime to ISO format string with timezone information @@ -1204,12 +1209,19 @@ async def pipeline_enqueue_file( # Try DOCLING first if configured and available if ( global_args.document_loading_engine == "DOCLING" - and DOCLING_AVAILABLE + and _is_docling_available() ): content = await asyncio.to_thread( _convert_with_docling, file_path ) else: + if ( + global_args.document_loading_engine == "DOCLING" + and not _is_docling_available() + ): + logger.warning( + f"DOCLING engine configured but not available for {file_path.name}. Falling back to pypdf." + ) # Use pypdf (non-blocking via to_thread) content = await asyncio.to_thread( _extract_pdf_pypdf, @@ -1238,12 +1250,19 @@ async def pipeline_enqueue_file( # Try DOCLING first if configured and available if ( global_args.document_loading_engine == "DOCLING" - and DOCLING_AVAILABLE + and _is_docling_available() ): content = await asyncio.to_thread( _convert_with_docling, file_path ) else: + if ( + global_args.document_loading_engine == "DOCLING" + and not _is_docling_available() + ): + logger.warning( + f"DOCLING engine configured but not available for {file_path.name}. Falling back to python-docx." + ) # Use python-docx (non-blocking via to_thread) content = await asyncio.to_thread(_extract_docx, file) except Exception as e: @@ -1268,12 +1287,19 @@ async def pipeline_enqueue_file( # Try DOCLING first if configured and available if ( global_args.document_loading_engine == "DOCLING" - and DOCLING_AVAILABLE + and _is_docling_available() ): content = await asyncio.to_thread( _convert_with_docling, file_path ) else: + if ( + global_args.document_loading_engine == "DOCLING" + and not _is_docling_available() + ): + logger.warning( + f"DOCLING engine configured but not available for {file_path.name}. Falling back to python-pptx." + ) # Use python-pptx (non-blocking via to_thread) content = await asyncio.to_thread(_extract_pptx, file) except Exception as e: @@ -1298,12 +1324,19 @@ async def pipeline_enqueue_file( # Try DOCLING first if configured and available if ( global_args.document_loading_engine == "DOCLING" - and DOCLING_AVAILABLE + and _is_docling_available() ): content = await asyncio.to_thread( _convert_with_docling, file_path ) else: + if ( + global_args.document_loading_engine == "DOCLING" + and not _is_docling_available() + ): + logger.warning( + f"DOCLING engine configured but not available for {file_path.name}. Falling back to openpyxl." + ) # Use openpyxl (non-blocking via to_thread) content = await asyncio.to_thread(_extract_xlsx, file) except Exception as e: diff --git a/pyproject.toml b/pyproject.toml index 1c0ea12b..3c7450f4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -29,7 +29,7 @@ dependencies = [ "json_repair", "nano-vectordb", "networkx", - "numpy", + "numpy>=1.24.0,<2.0.0", "pandas>=2.0.0,<2.4.0", "pipmaster", "pydantic", @@ -50,7 +50,7 @@ api = [ "json_repair", "nano-vectordb", "networkx", - "numpy", + "numpy>=1.24.0,<2.0.0", "openai>=1.0.0,<3.0.0", "pandas>=2.0.0,<2.4.0", "pipmaster", @@ -90,7 +90,9 @@ api = [ # Advanced document processing engine (optional) docling = [ - "docling>=2.0.0,<3.0.0", + # On macOS, pytorch and frameworks use Objective-C are not fork-safe, + # and not compatible to gunicorn multi-worker mode + "docling>=2.0.0,<3.0.0; sys_platform != 'darwin'", ] # Offline deployment dependencies (layered design for flexibility) diff --git a/uv.lock b/uv.lock 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+ "(python_full_version < '3.11' and platform_machine != 'aarch64' and sys_platform == 'linux') or (python_full_version < '3.11' and sys_platform != 'darwin' and sys_platform != 'linux')", +] sdist = { url = "https://files.pythonhosted.org/packages/fd/aa/3e0508d5a5dd96529cdc5a97011299056e14c6505b678fd58938792794b1/zstandard-0.25.0.tar.gz", hash = "sha256:7713e1179d162cf5c7906da876ec2ccb9c3a9dcbdffef0cc7f70c3667a205f0b", size = 711513, upload-time = "2025-09-14T22:15:54.002Z" } wheels = [ { url = "https://files.pythonhosted.org/packages/56/7a/28efd1d371f1acd037ac64ed1c5e2b41514a6cc937dd6ab6a13ab9f0702f/zstandard-0.25.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e59fdc271772f6686e01e1b3b74537259800f57e24280be3f29c8a0deb1904dd", size = 795256, upload-time = "2025-09-14T22:15:56.415Z" }, From 844537e378471b95a42705de8542edc82e7d304f Mon Sep 17 00:00:00 2001 From: LacombeLouis Date: Thu, 13 Nov 2025 12:17:51 +0100 Subject: [PATCH 60/62] Add a better regex --- lightrag/llm/ollama.py | 38 ++++++++++++++++++++------------------ 1 file changed, 20 insertions(+), 18 deletions(-) diff --git a/lightrag/llm/ollama.py b/lightrag/llm/ollama.py index 28d91075..9c2d17ee 100644 --- a/lightrag/llm/ollama.py +++ b/lightrag/llm/ollama.py @@ -1,5 +1,6 @@ from collections.abc import AsyncIterator import os +import re import pipmaster as pm @@ -23,10 +24,26 @@ from lightrag.exceptions import ( from lightrag.api import __api_version__ import numpy as np -from typing import Union +from typing import Optional, Union from lightrag.utils import logger +_OLLAMA_CLOUD_HOST = "https://ollama.com" +_CLOUD_MODEL_SUFFIX_PATTERN = re.compile(r"(?:-cloud|:cloud)$") + + +def _coerce_host_for_cloud_model(host: Optional[str], model: object) -> Optional[str]: + if host: + return host + try: + model_name_str = str(model) if model is not None else "" + except Exception: + model_name_str = "" + if _CLOUD_MODEL_SUFFIX_PATTERN.search(model_name_str): + return _OLLAMA_CLOUD_HOST + return host + + @retry( stop=stop_after_attempt(3), wait=wait_exponential(multiplier=1, min=4, max=10), @@ -64,15 +81,7 @@ async def _ollama_model_if_cache( if api_key: headers["Authorization"] = f"Bearer {api_key}" - # If this is a cloud model (names include '-cloud' or ':cloud'), default - # the host to Ollama cloud when no explicit host was provided. - try: - model_name_str = str(model) if model is not None else "" - except Exception: - model_name_str = "" - - if host is None and ("-cloud" in model_name_str or ":cloud" in model_name_str): - host = "https://ollama.com" + host = _coerce_host_for_cloud_model(host, model) ollama_client = ollama.AsyncClient(host=host, timeout=timeout, headers=headers) @@ -170,14 +179,7 @@ async def ollama_embed(texts: list[str], embed_model, **kwargs) -> np.ndarray: host = kwargs.pop("host", None) timeout = kwargs.pop("timeout", None) - # If embed_model targets Ollama cloud, default host when not provided - try: - embed_model_name = str(embed_model) if embed_model is not None else "" - except Exception: - embed_model_name = "" - - if host is None and ("-cloud" in embed_model_name or ":cloud" in embed_model_name): - host = "https://ollama.com" + host = _coerce_host_for_cloud_model(host, embed_model) ollama_client = ollama.AsyncClient(host=host, timeout=timeout, headers=headers) try: From cc031a3db9473447e2f8970057a7ca5bc0661a15 Mon Sep 17 00:00:00 2001 From: yangdx Date: Thu, 13 Nov 2025 19:18:04 +0800 Subject: [PATCH 61/62] Add macOS compatibility check for DOCLING with multi-worker Gunicorn --- lightrag/api/run_with_gunicorn.py | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/lightrag/api/run_with_gunicorn.py b/lightrag/api/run_with_gunicorn.py index 999211aa..0de2ac36 100644 --- a/lightrag/api/run_with_gunicorn.py +++ b/lightrag/api/run_with_gunicorn.py @@ -5,6 +5,7 @@ Start LightRAG server with Gunicorn import os import sys +import platform import pipmaster as pm from lightrag.api.utils_api import display_splash_screen, check_env_file from lightrag.api.config import global_args @@ -46,6 +47,35 @@ def main(): if not check_env_file(): sys.exit(1) + # Check DOCLING compatibility with Gunicorn multi-worker mode on macOS + if ( + platform.system() == "Darwin" + and global_args.document_loading_engine == "DOCLING" + and global_args.workers > 1 + ): + print("\n" + "=" * 80) + print("❌ ERROR: Incompatible configuration detected!") + print("=" * 80) + print( + "\nDOCLING engine with Gunicorn multi-worker mode is not supported on macOS" + ) + print("\nReason:") + print(" PyTorch (required by DOCLING) has known compatibility issues with") + print(" fork-based multiprocessing on macOS, which can cause crashes or") + print(" unexpected behavior when using Gunicorn with multiple workers.") + print("\nCurrent configuration:") + print(" - Operating System: macOS (Darwin)") + print(f" - Document Engine: {global_args.document_loading_engine}") + print(f" - Workers: {global_args.workers}") + print("\nPossible solutions:") + print(" 1. Use single worker mode:") + print(" --workers 1") + print("\n 2. Change document loading engine in .env:") + print(" DOCUMENT_LOADING_ENGINE=DEFAULT") + print("\n 3. Deploy on Linux where multi-worker mode is fully supported") + print("=" * 80 + "\n") + sys.exit(1) + # Check and install dependencies check_and_install_dependencies() From 77ad906d3a4a6913f6d3f5e1d613f61ba27c0628 Mon Sep 17 00:00:00 2001 From: yangdx Date: Thu, 13 Nov 2025 20:41:44 +0800 Subject: [PATCH 62/62] Improve error handling and logging in cloud model detection --- lightrag/llm/ollama.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/lightrag/llm/ollama.py b/lightrag/llm/ollama.py index 9c2d17ee..670351bc 100644 --- a/lightrag/llm/ollama.py +++ b/lightrag/llm/ollama.py @@ -37,9 +37,13 @@ def _coerce_host_for_cloud_model(host: Optional[str], model: object) -> Optional return host try: model_name_str = str(model) if model is not None else "" - except Exception: + except (TypeError, ValueError, AttributeError) as e: + logger.warning(f"Failed to convert model to string: {e}, using empty string") model_name_str = "" if _CLOUD_MODEL_SUFFIX_PATTERN.search(model_name_str): + logger.debug( + f"Detected cloud model '{model_name_str}', using Ollama Cloud host" + ) return _OLLAMA_CLOUD_HOST return host